These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8508#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 913 fasta sequence [ACGTTAGCACCCCAGGACTGTCTCCCATGCTCGCACTTGACGGTATTCAGAGTTTGCCATGGTTTGGTAAGTCGCGATGACCCCCTAGCCATAACAGTGCTTTACCCCCGTCAGTGATACATGAGGCACTACCTAAATAGTTTTCGAGGAGAACCAGCTATTTCCAAGTTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTGCAACGTTAGTGGGTTCGGACCTCCAGTGCGTGTTACCGCACCTTCATCCTGGCCATGGATAGATCACTTGGTTTCGGGTCTACGCCCAGCAACTGTGCGCCCTATTCGGACTCGGTTTCCCTACGCCTCCCCTATTTGGTTAAGCTTGCTACTGAACGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACTCCACGAAGGGAGCTCCCACTGTTTGTATGCATCCGGTTTCAGGTTCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATGATGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAGGGTTTCTCGTGCCCCGCCCTACTTGTCGCACGCTCAGACCCGCCATCTACCTTTCGCATACGGGACTATCACCCTGTATCGTCGGACTTTCCAGACCGTTTTGCTAAGTAAATGGTTTAGTCGTGCAGGCTACTCCCAGTTCGCTCGCCACTACTTTGGGAATCTCGGTTGATTTCTGTTCCTCGAGCTACTTAGATGTTTCAGTTCGCTCGGTTCGCTTCCTCTGGCCTATGTATTCAGCCAGGGATGACCCTTACGGGCCGGGTTTCCCCATTCGGACATCTGCGGATCAAAGCTTCATTGCCAGCTCCCCGCAGCTTTTCGCAGGCTTGCACGTCCTTCATC] [+] EMBL CD088134 [ACGTTAGCACCCCAGGACTGTCTCCCATGCTCGCACTTGACGGTATTCAGAGTTTGCCATGGTTTGGTAAGTCGCGATGACCCCCTAGCCATAACAGTGCTTTACCCCCGTCAGTGATACATGAGGCACTACCTAAATAGTTTTCGAGGAGAACCAGCTATTTCCAAGTTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTGCAACGTTAGTGGGTTCGGACCTCCAGTGCGTGTTACCGCACCTTCATCCTGGCCATGGATAGATCACTTGGTTTCGGGTCTACGCCCAGCAACTGTGCGCCCTATTCGGACTCGGTTTCCCTACGCCTCCCCTATTTGGTTAAGCTTGCTACTGAACGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACTCCACGAAGGGAGCTCCCACTGTTTGTATGCATCCGGTTTCAGGTTCTATTTCACTCCCCTCCCGGGGTTCTTTTCACCTTTCCCTCACGGTACTG ] [-] EMBL CD088100 [ CGTTAGCACCCCAGGACTGTCTCCCATGCTCGCACTTGACGGTATTCAGAGTTTGCCATGGTTTGGTAAGTCGCGATGACCCCCTAGCCATAACAGTGCTTTACCCCCGTCAGTGATACATGAGGCACTACCTAAATAGTTTTCGAGGAGAACCAGCTATTTCCAAGTTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTGCAACGTTAGTGGGTTCGGACCTCCAGTGCGTGTTACCGCACCTTCATCCTGGCCATGGATAGATCACTTGGTTTCGGGTCTACGCCCAGCAACTGTGCGCCCTATTCGGACTCGGTTTCCCTACGCCTCCCCTATTTGGTTAAGCTTGCTACTGAACGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACTCCACGAAGGGAGCTCCCACTGTTTGTATGCATCCGGTCTCAGGTTCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGG ] [-] EMBL CD087416 [ ctACTTTTTGTAAGCATGCGGTTTCAGGATCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATGATGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAGGGTTTCTCGTGCCCCGCCCTACTTGTCGCACGCTCAGACCCGCCATCTACCTTTCGCATACGGGACTATCACCCTGTATCGTCGGACTTTCCAGACCGTTTTGCTAAGTAAATGGTTTAGTCGTGCAGGCTACTCCCAGTTCGCTCGCCACTACTTTGGGAA ] [+] EMBL CD089667 [ TTGGAGGATGGTCCCCCCATCTTCAAACAGGATTTCACGTGTCCCGCCCTACTTGTCGCACGCTCAGACCCGCCATCTACTTTTCGCATACGGGACTATCACCCTGTATCGTCGGACTTTCCAGACCGTTTTGCTAAGTAAATGGTTTAGTCGTGCAGGCTACTCCCAGTTCGCTCGCCACTACTTTGGGAATCTCGGTTGATTTCTGTTCCTCGAGCTACTTAGATGTTTCAGTTCGCTCGGTTCGCTTCCTCTGGCCTATGTATTCAGCCAGGGATGACCCTTACGGGCCGGGTTTCCCCATTCGGACATCTGCGGATCAAAGCTTCATTGCCAGCTCCCCGCAGCTTTTCGCAGGCTTGCACGTCCTTCATC] consensusID : consensus_8508#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 714 fasta sequence [TATAGCTTTAGAATCTCGGCATTTGACATTTGTTAGAGAGGATTCATGCCCGTCTCATTAGAATGACGTTCACTTTAATGTATTAATTTCCATACCATCTGAAGAAATCATTTCAGATAACACACTAGATATCTACTGCAACCTATCCACCTTGTTACCTTGTTAATCGATAATACCTCAAATTCTGAGTATCGACAGTCTTCTTATTGTAGATGTTTCAGCAAAGATGACTAGTGTAATACAACCAAATGGGAAAATAACTTTGTATTTTGATAACGTAAGTTGCACAATCTCATGAAAATGTAATTTTGTTCATGTACTTCAGATCATTCTACTGTTTCATATTATTAAATTCTGTCAAAGGTGTCTGGTTAAGTTGACCATGATAAAAAGAGATCAACATTATGTAATGAGCAAACGGACTAGTTGACAAGATTGTCAATCGTTTTAATGACACACTATTAAAGCACGTGTTGAAAATAATGAATAATCAGAAGTGAAAATCTATCAGAATAAGTAATCATGTGTTCGTGACGAATATTAAAGGATAGTGTATGTTTGAGTACTATACAGAATGTGTCATATTCTGTCATGCTCCATTTCATCTTGTTAAGATTAGCTGTTCGGATTGTTCATTGTTGAAAATCCAGGTTGCAGCATCCTCACAGTTATTTACCATCATATTTCATTTCAACAGACGAAAATTTACATTTC] [-] EMBL CD162274 [TATAGCTTTAGAATCTCGGCATTTGACATTTGTTAGAGAGGATTCATGCCCGTCTCATTAGAATGACGTTCACTTTAATGTATTAATTTCCATACCATCTGAAGAAATCATTTCAGATAACACACTAGATATCTACTGCAACCTATCCACCTTGTTACCTTGTTAATCGATAATACCTCAAATTCTGAGTATCGACAGTCTTCTTATTGTAGATGTTTCA ] [+] EMBL CD115086 [ TTCAGATAACACACTAGATATCTACTGCAACCTATCCACCTTGTTACCTTGTTAATCGATAATACCTCAAATTCTGAGTATCGACAGTCTTCTTATTGTAGATGTTTCAGCAAAGATGACTAGTGTAATACAACCAAATGGGAAAATAACTTTGTATTTTGATAACGTAAGTTGCACAATCTCATGAAAATGTAATTTTGTTCATGTACTTCAGATCATTCTACTGTTTCATATTATTAAATTCTGTCAAAGGTGTCTGGTTAAGTTGACCATGATAAAAAGAGATCAACATTATGTAATGAGCAAACGGACTAGTTGACAAGATTGTCAATCGTTTTAATGACACACTATTAAAGCACGTGTTGAAAATAATGAATAATCAGAAGTGAAAATCTATCAGAATAAGTAATCATGTGTTCGTGACGAATATTAAAGGATAGTGTATGTTTGAGTACTATACAGAATGTGTCATATTCTGTCATGCTCCATTTCATCTTGTTAAGATTAGCTGTTCGGATTGTTCATTGTTGAAAATCCAGGTTGCAGCATCCTCACAGTTATTTACCATCATATTTCATTTCAACAGACGAAAATTTACATTTC] consensusID : consensus_8508#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 152 fasta sequence [GTCTCACGCGAATAAGTGCATGTGGTGGATGCCTTGGCGATTACAGGCGAAGAAGGACGTGCAAGCCTGCGAAAAGCTCCGGGGAGCTGGCAATGAAGCTTTGATCCGGAGATGTCCGAATGGGGAAACCCACCCCGCAAGGGGTATCGCAC] [+] EMBL CD086682 [GTCTCACGCGAATAAGTGCATGTGGTGGATGCCTTGGCGATTACAGGCGAAGAAGGACGTGCAAGCCTGCGAAAAGCTCCGGGGAGCTGGCAATGAAGCTTTGATCCGGAGATGTCCGAATGGGGAAACCCACCCCGCAAGGGGTATCGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8508#0 -----------ACGTTAGCACCCCAGGACTGTCTCCCATGCTCGCACTTGACGGTATTCA 49 consensus_8508#2 ------------------------------------------------------------ consensus_8508#1 TATAGCTTTAGAATCTCGGCATTTGACATTTGTTAGAGAGGATTCATGCCCGTCTCATTA 60 consensus_8508#0 GAGTTTGCCATGGTTTGGTAAGTCGCGATGACCCCCTAGCCATAACAGTGCTTTACCCCC 109 consensus_8508#2 -------------------------------------------------GTCTCACGCGA 11 consensus_8508#1 GAATGACGTTCACTTTAATGTATTAATTTCCATACCATCTGAAGAAATCATTTCAGATAA 120 * * consensus_8508#0 GTCAGT-GATACATGAGGCAC--TACCTAAATAGTTTTCGAGGAGAACCAGCTATTTCCA 166 consensus_8508#2 ATAAGT-G-CATGTGGTGGA---TGCCTTGGCGATTAC--AGGCGAAGAAGG-ACGTGCA 63 consensus_8508#1 CACACTAGATATCTACTGCAACCTATCCACCTTGTTACCTTGTTAATCGATA-ATACCTC 179 * * * * * * * * * ** * * * * consensus_8508#0 AGTTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTGCAACGTT--AGT 224 consensus_8508#2 AGCCTGCGAAAAGCTCCGGG--GAGCTGGCAATGAAGCTTTGATCCGGAGATGTCCGAAT 121 consensus_8508#1 AAATTCTGAGTATCGACAGT--CTTCTTATTGTAGATGTTTCAGCAAAGATGACTAGTGT 237 * * * * * * * * consensus_8508#0 GGGTTCGGACCTCCAGTGCGTGTTACCGCACCTTCATCCTGGCCATGGATAGATCACTTG 284 consensus_8508#2 GGGGAAACCCACCCCGCAAGGGGTATCGCAC----------------------------- 152 consensus_8508#1 AATACAACCAAATGGGAAAATAACTTTGTATTTTGATAACGTAAGTTGCACAATCTCATG 297 * * * consensus_8508#0 GTTTCGGGTCTACGCCCAGCAACTGTGCGCCCTATTCGGACTCGGTTTCCCTACGCCTCC 344 consensus_8508#2 ------------------------------------------------------------ consensus_8508#1 AAAATGTAATTTTGTTCATGTACTTCAGATCATTCTACTGTTTCATATTATTAAATTCTG 357 consensus_8508#0 CCTATTTGGTTAAGCTTGCTACTGAACGTAAGTCGCTGACCCATTATACAAAAGGTACGC 404 consensus_8508#2 ------------------------------------------------------------ consensus_8508#1 TCAAAGGTGTCTGGTTAAGTTGACCATGATAAAAAGAGATCAACATTATGTAATGAGCAA 417 consensus_8508#0 AGTCACTCCACGAAGGGAGCTCCCACTGTTTGTATGCATCCGGTTTCAGGTTCTATTTCA 464 consensus_8508#2 ------------------------------------------------------------ consensus_8508#1 ACGGACTAGTTGACAAGATTGTCAATCGTTTTAATGACACACTATTAAAGCACGTGTTGA 477 consensus_8508#0 CTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATG 524 consensus_8508#2 ------------------------------------------------------------ consensus_8508#1 AAATAATGAATAATCAGAAGTGAAAATCTATCAGAATAAGTAATCATGTGTTCGTGACGA 537 consensus_8508#0 ATGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAGGGTTTCTCGTGCCCCG 584 consensus_8508#2 ------------------------------------------------------------ consensus_8508#1 ATATTAAAGGATAGTGTATGTTTGAGTACTATACAGAATGTGTCATATTCTGTCATGCTC 597 consensus_8508#0 CCCTACTTGTCGCACGCTCAGACCCGCCATCTACCTTTCGCATACGGGACTATCACCCTG 644 consensus_8508#2 ------------------------------------------------------------ consensus_8508#1 CATTTCATCTTGTTAAGATTAGCTGTTCGGATTGTTCATTGTTGAAAATCCAGGTTGCAG 657 consensus_8508#0 TATCGTCGGACTTTCCAGACCGTTTTGCTAAGTAAATGGTTTAGTCGTGCAGGCTACTCC 704 consensus_8508#2 ------------------------------------------------------------ consensus_8508#1 CATCCTCACAGTTATTTACCATCATATTTCATTTCAACAGACGAAAATTTACATTTC--- 714 consensus_8508#0 CAGTTCGCTCGCCACTACTTTGGGAATCTCGGTTGATTTCTGTTCCTCGAGCTACTTAGA 764 consensus_8508#2 ------------------------------------------------------------ consensus_8508#1 ------------------------------------------------------------ consensus_8508#0 TGTTTCAGTTCGCTCGGTTCGCTTCCTCTGGCCTATGTATTCAGCCAGGGATGACCCTTA 824 consensus_8508#2 ------------------------------------------------------------ consensus_8508#1 ------------------------------------------------------------ consensus_8508#0 CGGGCCGGGTTTCCCCATTCGGACATCTGCGGATCAAAGCTTCATTGCCAGCTCCCCGCA 884 consensus_8508#2 ------------------------------------------------------------ consensus_8508#1 ------------------------------------------------------------ consensus_8508#0 GCTTTTCGCAGGCTTGCACGTCCTTCATC 913 consensus_8508#2 ----------------------------- consensus_8508#1 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||