cluster # 8514

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Schistosoma mansoni
cluster # 8514 cluster # 8514 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8514#0 length = 689 sequences # 6

consensus_8514#1 length = 303 sequences # 1

consensusID : consensus_8514#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 689
fasta sequence

                              [AGACCAGTAAGTGCAGATGCAGATGTTCTGTTAGGTGGAATGTCGAAAACCAAGAAAACAGATAGAATGCAGAACTTTTCAAATTTAAATCATGTTATGCCATCACGAATGACTACTTCACAATATACTCTTGGACGCGATCCAGGAAATAAATCACGTGGTTCTAATGGGAATAAAAGCACCGGTGTTCTTTCCAATCAAACTCGAGTGAAAAATAATCGAATCGATCCTAACCAAAATCCTGACTGTATTGGTAGTGCTATCCAACCACCCTCTCCAGATGTTCTTCTGGCTTTGTTTGATTTAGTCAACAAACTTTTAGTTCCTTATGGTAATTCAGTCCTCACATGTCCTGAGATCACAGCTCCAACTGCATTTCTACGCTTGTTATGTATATTGTTAAAATGTGCTTCTCAAGATTGCTATACTTTA-AAGTATTCATCTTCAAATAATACATTGGTCACATCAAATTCACCTTATCATGCAAATTCTTCAAAACATATAGACAGTTATGATTCTACTAAAGAGTTTATTCAACAACTGATATCAGATGAAACACATTTGTTTATTACAAACTTTTCTACTTATGGTTTAGATATTTCTTTAGTACGTTTATTAGCTTCACAACTTTTATCATCAACCTCATCATCACCATC-GTCAATGTCACTGTCATCACATGCTTCGTTGGC]

[-] EMBL CD066948             [AGACCAGTAAGTGCAGATGCAGATGTTCTGTTAGGTGGAATGTCGAAAACCAAGAAAACAGATAGAATGCAGAACTTTTCAAATTTAAATCATGTTATGCCATCACGAATGACTACTTCACAATATACTCTTGGACGCGATCCAGGAAATAAATCACGTGGTTCTAATGGGAATAAAAGCACCGGTGTTCTTTCCAATCAAACTCGAGTGAAAAATAATCGAATCGATCCTAACCAAAATCCTGACTGTATTGGTAGTGCTATCCAACCACCCTCTCCAGATGTTCTTCTGGCTTTGTTTGATTTAGTCAACAAACTTTTAGTTCCTTATGGTAATTCAGTCCT                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD066883             [                                                                GAATGCAAAACTTTTCAAATTTAAATCATGTTATGCCATCACGAATGACTACTTCACAATATACTCTTGGACGCGATCCAGGAAATAAATCACGTGGTTCTAATGGGAATAAAAGCACCGGTGTTCTTTCCAATCAAACTCGAGTGAAAAATAATCGAATCGATCCTAACCAAAATCCTGACTGTATTGGTAGTGCTATCCAACCACCCTCTCCAGATGTTCTTCTGGCTTTGTTTGATTTAGTCAACAAACTTTTAGTTCCTTATGGTAATTCAG                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD068535             [                                                                                                                                                     TAAATCACGTGGTTCTAATGGGAATAAAAGCACCGGTGTACTTTCCAATCAAACTCGAGTGAAACATAATCGAATCGATCCTAACCAAAATCCTGACTGTATTGGTAGTGCTATCCAAGCACCCTCTACAGATGTTCTTCTGGCTTTGTTTGATATAGTCAACAAAATTTTAGTTCCTTATGGTAATTCAGTCCTCACATGTCCTGAGATCACAGCTCCAACTGCATTTCTACGCTTGTGATGTATATCGTCAAAATGTGGTTCTCAAGATTGCTATACTTGACAAGTATTCATCTTCAAATAATACATTGCTCACATCAAATTCACCTTATCATGCACATTCTTCAAAACATATAGACAGc                                                                                                                                                                                    ]
[+] EMBL CD114670             [                                                                                                                                                                                                                                                                                                                                                                                                 TGTTATGTATATTGTTAAAATGTGCTTCTCAAGATTGCTATACTTTA AAGTATTCATCTTCAAATAATACATTGGTCACATCAAATTCACCTTATCATGCAAGTTCTTCAAAACATATAGACAGTTATGATTCTACTAAAGAGTTTATTCAACAACTGATATCAGATGAAACACATTTGTTTATTACAAACTTTTCTACTTATGGTTTAGATATTTCTTTAGTACGTTTATTAGCTTCACAACTTTTATCATCAACCTCATCATCACCATC GTCAATGTCACTGTCATCACATGCTTCGTTGG ]
[-] EMBL CD114791             [                                                                                                                                                                                                                                                                                                                                                                                                  GTTATGTATATTGTTAAAATGTGCTTCTCAAGATTGCTATACTTTA AAGTATTCATCTTCAAATAATACATTGGTCACATCAAATTCACCTTATCATGCAAATTCTTCAAAACATATAGACAGTTATGATTCTACTAAAGAGTTTATTCAACAACTGATATCAGATGAAACACATTTGTTTATTACAAACTTTTCTACTTATGGTTTAGATATTTCTTTAGTACGTTTATTAGCTTCACAACTTTTATCATCAACCTCATCATCACCATCAGTCAATGTCACTGTCATCACATGCTTCGTTGGC]
[-] EMBL CD114767             [                                                                                                                                                                                                                                                                                                                                                                                                  GTTATGTATATTGTTAGAATGTGCTTCTCAAGATTGCTATACTTTA AAGTATTCATCTTCAAATAATACATTGGTCACATCAAATTCACCTTATCATGCAAATTCTTCAAAACATATAGACAGTTATGATTCTACTAAAGAGTTTATTCAACAACTGATATCAGATGAAACACATTTGTTTATTACAAACTTTTCTACTTATGGTTTAGATATTTCTTTAGTACGTTTTTTAGCTTCACAACTTTTATCATCAACCTCATCATCACCATC GTCAATGTCACTGTCATCACATGCTTCGTTGGC]




>consensus_8514#0
AGACCAGTAAGTGCAGATGCAGATGTTCTGTTAGGTGGAATGTCGAAAACCAAGAAAACA
GATAGAATGCAGAACTTTTCAAATTTAAATCATGTTATGCCATCACGAATGACTACTTCA
CAATATACTCTTGGACGCGATCCAGGAAATAAATCACGTGGTTCTAATGGGAATAAAAGC
ACCGGTGTTCTTTCCAATCAAACTCGAGTGAAAAATAATCGAATCGATCCTAACCAAAAT
CCTGACTGTATTGGTAGTGCTATCCAACCACCCTCTCCAGATGTTCTTCTGGCTTTGTTT
GATTTAGTCAACAAACTTTTAGTTCCTTATGGTAATTCAGTCCTCACATGTCCTGAGATC
ACAGCTCCAACTGCATTTCTACGCTTGTTATGTATATTGTTAAAATGTGCTTCTCAAGAT
TGCTATACTTTAAAGTATTCATCTTCAAATAATACATTGGTCACATCAAATTCACCTTAT
CATGCAAATTCTTCAAAACATATAGACAGTTATGATTCTACTAAAGAGTTTATTCAACAA
CTGATATCAGATGAAACACATTTGTTTATTACAAACTTTTCTACTTATGGTTTAGATATT
TCTTTAGTACGTTTATTAGCTTCACAACTTTTATCATCAACCTCATCATCACCATCGTCA
ATGTCACTGTCATCACATGCTTCGTTGGC

consensusID : consensus_8514#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence

                              [GTTATGTATATTGTTAAAATGTGCTTCTCAAGATTGCTATACTTTAAAGTATTCATCTTCAAATAATACATTGGTCACCTCGAATTCACCTTATCATGCAAATTCTTCAAAACATATAGACACTTATGATTATACTCAAGAGATTATTCCACCACTGATACCAGATGAAACACATTTGGTTATTACGAACTTTTCTAATTATGGTTTAGATATTTGTGTAGTACGTTTATTAGCTTCACAACTTTGATCATCAACCTCATAATCACGATAGTGAATGTAGCTGTACATCACAGGTTCGTAGGC]

[-] EMBL CD114833             [GTTATGTATATTGTTAAAATGTGCTTCTCAAGATTGCTATACTTTAAAGTATTCATCTTCAAATAATACATTGGTCACCTCGAATTCACCTTATCATGCAAATTCTTCAAAACATATAGACACTTATGATTATACTCAAGAGATTATTCCACCACTGATACCAGATGAAACACATTTGGTTATTACGAACTTTTCTAATTATGGTTTAGATATTTGTGTAGTACGTTTATTAGCTTCACAACTTTGATCATCAACCTCATAATCACGATAGTGAATGTAGCTGTACATCACAGGTTCGTAGGC]




>consensus_8514#1
GTTATGTATATTGTTAAAATGTGCTTCTCAAGATTGCTATACTTTAAAGTATTCATCTTC
AAATAATACATTGGTCACCTCGAATTCACCTTATCATGCAAATTCTTCAAAACATATAGA
CACTTATGATTATACTCAAGAGATTATTCCACCACTGATACCAGATGAAACACATTTGGT
TATTACGAACTTTTCTAATTATGGTTTAGATATTTGTGTAGTACGTTTATTAGCTTCACA
ACTTTGATCATCAACCTCATAATCACGATAGTGAATGTAGCTGTACATCACAGGTTCGTA
GGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8514#0      AGACCAGTAAGTGCAGATGCAGATGTTCTGTTAGGTGGAATGTCGAAAACCAAGAAAACA 60
consensus_8514#1      ------------------------------------------------------------
                                                                                  

consensus_8514#0      GATAGAATGCAGAACTTTTCAAATTTAAATCATGTTATGCCATCACGAATGACTACTTCA 120
consensus_8514#1      ------------------------------------------------------------
                                                                                  

consensus_8514#0      CAATATACTCTTGGACGCGATCCAGGAAATAAATCACGTGGTTCTAATGGGAATAAAAGC 180
consensus_8514#1      ------------------------------------------------------------
                                                                                  

consensus_8514#0      ACCGGTGTTCTTTCCAATCAAACTCGAGTGAAAAATAATCGAATCGATCCTAACCAAAAT 240
consensus_8514#1      ------------------------------------------------------------
                                                                                  

consensus_8514#0      CCTGACTGTATTGGTAGTGCTATCCAACCACCCTCTCCAGATGTTCTTCTGGCTTTGTTT 300
consensus_8514#1      ------------------------------------------------------------
                                                                                  

consensus_8514#0      GATTTAGTCAACAAACTTTTAGTTCCTTATGGTAATTCAGTCCTCACATGTCCTGAGATC 360
consensus_8514#1      ------------------------------------------------------------
                                                                                  

consensus_8514#0      ACAGCTCCAACTGCATTTCTACGCTTGTTATGTATATTGTTAAAATGTGCTTCTCAAGAT 420
consensus_8514#1      --------------------------GTTATGTATATTGTTAAAATGTGCTTCTCAAGAT 34
                                                **********************************

consensus_8514#0      TGCTATACTTTAAAGTATTCATCTTCAAATAATACATTGGTCACATCAAATTCACCTTAT 480
consensus_8514#1      TGCTATACTTTAAAGTATTCATCTTCAAATAATACATTGGTCACCTCGAATTCACCTTAT 94
                      ******************************************** ** ************

consensus_8514#0      CATGCAAATTCTTCAAAACATATAGACAGTTATGATTCTACTAAAGAGTTTATTCAACAA 540
consensus_8514#1      CATGCAAATTCTTCAAAACATATAGACACTTATGATTATACTCAAGAGATTATTCCACCA 154
                      **************************** ******** **** ***** ****** ** *

consensus_8514#0      CTGATATCAGATGAAACACATTTGTTTATTACAAACTTTTCTACTTATGGTTTAGATATT 600
consensus_8514#1      CTGATACCAGATGAAACACATTTGGTTATTACGAACTTTTCTAATTATGGTTTAGATATT 214
                      ****** ***************** ******* ********** ****************

consensus_8514#0      TCTTTAGTACGTTTATTAGCTTCACAACTTTTATCATCAACCTCATCATCACCATCGTCA 660
consensus_8514#1      TGTGTAGTACGTTTATTAGCTTCACAACTTTGATCATCAACCTCATAATCACGATAGTGA 274
                      * * *************************** ************** ***** ** ** *

consensus_8514#0      ATGTCACTGT-CATCACATGCTTCGTTGGC 689
consensus_8514#1      ATGTAGCTGTACATCACA-GGTTCGTAGGC 303
                      ****  **** ******* * ***** ***