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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8518#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1942 fasta sequence
[ATTTATATTTTGAGACTGAATTGGACAATTACGTTGACATGAGAATTAATTGATTAGTGACTTAAACAAATGAACTCTTTTTTTAAAGCTGAACACAATGAAAAGATATGCTCCTAATAATAAATAGCAGGCTTAAATTATAGATTTTGTATATTATAAGTATCTTGTATGATATGTGTTAGAGGTCGATGATTTAATTCCTTCAAAATTCTGAGTAAAAATTACATTCAATCGTAGTAATATAACGATATAAAATGAATTCAATATAATAAACGAAAGATAATATTGTACTCAGACAACCATCATTGACAATGTTTTTAGATCAAAAGAATACGATTTATATTTCACTTTATTTTTTAGTTAACAAATTGTAATTCAGTAGGATGTAACAGAAAAAATAAAACAAGCAGAGGACTGAGCAAGTTAAAATCACAGTGAGATCGACCAGGAATGAATATATATATATATATATATATATATATATATATATATCGGCGATTTGATGAGGAAAAATTTTTCGTATCACTGTCCCTATACATTTCTCATGAGATGAGTAAATTGTTGTTTCAGCAACAGATGAAGAATTAGCAGTAGTCACAAAAAATAGCCCCAAAATAAATTCTTTTATTTAAAAATCGTGATAATAATAATCATAATAGTGCACATTATCTTTAGATGACAGAAGAGAGATTTTCAAAAGTAATTATTTTCTTGATGCAGTAAACGCAATTGATCATTGATTTGTGTATGTAGTGTCTTGGCAAGTAGGATAGCTATCAGCTGAAATACAGCTACGCTAACAAATCCATAAGCGAAATAGACTATATTGTTTTCTACTATACTGACAAGAGCATCAACACAACCAGTTGTCCATACCAAACGACTGGCTTCAGCGGTTGTTAATTTTTGTACACCAAATCCACATGATGTATTAATAATATTAACACTGATATCATTCATTTGACGGCAACAAGAATATGGAACTCCACAAGCTTCAGGGCTTATATTAGACTTATCACATGAAAAGAATCGACTAGCTGTCCAATCAAGATATGACTTAGGTCCGCAACAATTAAGCTCTTTTTGAATAAAGTCCATAAAGTTTGTTGTATCCTCAAACCCAAGTTCTCTATATTGAGTAACAAAAGTAGTTTTGATTAACTCTTCAAGCCTGTGGATAGTTGATTCACGGTACACAAAGAACAATACACAGCAAACAACCTCTGTCAGAAAAAGCAACGTTAAAATAAAGTAATAAAATCTCAGCAGACAAGTGTTTTCACGTANAGACCCGACAAAACCAGCCAGTGAAACAAATAAGGTTATGACCCCAACGACCATACAAATTACGGTTAAGTTGAAAAGCCAATGCAATGCGACAGTTTTAGATTTCCATGGTATACCTCCCGACTCAGTAAATGCGATCACACCGAATACAAGAAACACTGTTCCAATAGCTAAAAATATAAAGTTCGTCAAGCATAAAGAATACTTAACCCATTGGTTAATGTAAGATATTCTATCACCAAAACGTCGATGATACCTATGTCCCATTTGATGCACAGAAAATGTATCAAAAACGCCAATATTTGGAAACCAATACTGTTCAACAAGAAAACACCTATTAAGAGGGCTGTGGGGTATACGCTGAAACAATACTGTTAGGAGCCAGGCAAACAACAAACAACCTTGAGACATTGAAGCTCCCTCTCTGGTTTCCGATGGCATCAATCAGCAATATCGTTAAGACGAACTAGTTTCAGTCCCAATTCGCAAAGAAAATAATGTTGGGTGGCTCTTGTTAGTCCTCAAAGCAGTGGTCTCCCAGTCGATCTAACTTTCTTTTAATTTAGTCAACAGATGAAGCTTCGGTCAATTGTTGAGATAAGGATTCTCACTAATTATTGATTCGATGAGAAGGTAGGTAATTAGTTGAGAAGTG]
[+] EMBL CD077170 [ATTTATATTTTGAGACTGAATTGGACAATTACGTTGACATGAGAATTAATTGATTAGTGACTTAAACAAATGAACTCTTTTTTTAAAGCTGAACACAATGAAAAGATATGCTCCTAATAATAAATAGCAGGCTTAAATTATAGATTTTGTATATTATAAGTATCTTGTATGATATGTGTTAGAGGTCGATGATTTAATTCCTTCAAAATTCTGAGTAAAAATTACATTCAATCGTAGTAATATAACGATATAAAATGAATTCAATATAATAAACGAAAGATAATATTGTACTCAGACAACCATCATTGACAATGTTTTTAGATCAAAAGAATACGATTTATATTTCACTTTATTTTTTAGTTAACAAATTGTAATTCAGTAGGATGTAACAGAAAAAATAAAACAAGCAGAGGACTGAGCAAGTTAA ]
[+] EMBL CD073342 [ ATTGTAATTCAGTAGGATGTAACAGAAAAAATAAAACAAGCAGAGGACTGAGCAAGTTAAAATCACAGTGAGATCGACCAGGAATGAATATATATATATATATATATATATATATATATATATATCGGCGATTTGATGAGGAAAAATTTTTCGTATCACTGTCCCTATACATTTCTCATGAGATGAGTAAATTGTTGTTTCAGCAACAGATGAAGAATTAGCAGTAGTCACAAAAAATAGCCCCAAAATAAATTCTTTTATTTAAAAATCGTGATAATAATAATCATAATAGTGCACATTATCTTTAGATGACAGAAGAGAGATTTTCAAAAGTAATTATTTTCTTGATGCAGTAAACGCAATTGATCATTGATTTGTGTATGTAGTGTCTTGGCAAGTAGGATAGCTATCAGCTGAAATACAGCTACGCTAACAAATCCATAAGCGAAATAGACTATATTGTTTTCTACTATACTGACAAGAGCATCAACACAACCAGTTGTCCATACCAAACGACTGGCTTCAGCGGTTGTTAATTTTTGTACACCAAATCCACATGATGTATTA ]
[-] EMBL CD132682 [ GTAGGATAGCTATCAGCTGAAATACAGCTACGCTAACAAATCCATAAGCGAAATAGACTATATTGTTTTCTACTATACTGACAAGAGCATCAACACAACCAGTTGTCCATACCAAACGACTGGCTTCAGCGGTTGTTAATTTTTGTACACCAAATCCACATGATGTATTAATAATATTAACACTGATATCATTCATTTGACGGCAACAAGAATATGGAACTCCACAAGCTTCAGGGCTTATATTAGACTTATCACATGAAAAGAATCGACTAGCTGTCCAATCAAGATATGACTTAGGTCCGCAACAATTAAGCTCTTTTTGAATAAAGTCCATAAAGTTTGTTGTATCCTCAAACCCAAGTTCTCTATATTGAGTAACGAAAGTAGTTTTGATTAACTCTTCAAGCCTGTGGATAGTTGATTCACGGTACACAAAGAACAATACACAG ]
[+] EMBL CD196040 [ GACTTAGGTCCGCAACAATTAAGCTCTTTTTGAATAAAGTCCATAAAGTTTGTTGTATCCTCAAACCCAAGTTCTCTATATTGAGTAACAAAAGTAGTTTTGATTAACTCTTCAAGCCTGTGGATAGTTGATTCACGGTACACAAAGAACAATACACAGCAAACAACCTCTGTCAGAAAAAGCAACGTTAAAATAAAGTAATAAAATCTCAGCAGACAAGTGTTTTCACGTANAGACCCGACAAAACCAGCCAGTGAAACAAATAAGGTTAT ]
[-] EMBL CD078882 [ CTCAAACCCAAGTTCTCTATATTGAGTAACAAAAGTAGTTTTGATTAACTCTTCAAGCCTGTGGATAGTTGATTCACGGTACACAAAGAACAATACACAGCAAACAACCTCTGTCAGAAAAAGCAACGTTAAAATAAAGTAATAAAATCTCAGCAGACAAGTGTTTTCACGTAAAGACCCGACAAAACCAGCCAGTGAAACAAATAAGGTTATGACCCCAACGACCATACAAATTACGGTTAAGTTGAAAAGCCAATGCAATGCGACAGTTTTAGATTTCCATGGTATACCTCCCGACTCAGTAAATGCGATCACACCGAATACAAGAAACACTGTTCCAATAGCTAAAAATATAAAGTTCGTCAAGCATAAAGAATACTTAACCCATTGGTTAATGTAAGATATTCTATCACCAAAACGTCGATGATACCTATGTCCCATTTGATGCACAGAAAATGTATCAAAAACGCCAATATTTGGAAACCAATACTGTTCAACAAGAAAACACCTATTAAGAGGGCTGTGGGGTATACGCTGAAACAATACTGTTAGGAGCCAGGCAAACAACAAACAACC ]
[-] EMBL CD198045 [ ACGCTGAAACAATACTGTTAGGAGCCAGGCAAACAACAAACAACCTTGAGACATTGAAGCTCCCTCTCTGGTTTCCGATGGCATCAATCAGCAATATCGTTAAGACGAACTAGTTTCAGTCCCAATTCGCAAAGAAAATAATGTTGGGTGGCTCTTGTTAGTCCTCAAAGCAGTGGTCTCCCAGTCGATCTAACTTTCTTTTAATTTAGTCAACAGATGAAGCTTCGGTCAATTGTTGAGATAAGGATTCTCACTAATTATTGATTCGATGAGAAGGTAGGTAATTAGTTGAGAAGTG]
consensusID : consensus_8518#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence
[TTTATTTCTTAGTTAACAAATGGCAATTCAGTAGGATGTAACAGAAAAAATAAGACTAGCAGAGGACTGATCAAGTTAAAATCACAGTGAGATCGACCAGGAATGAATATATATATATATATATATGTATATATATATATATATATATGGTCGATTTGATGAGGAGAAATTTTTCGTATCATTGCCCGTATACATTTCTCATGAGATGAGCAAATGGTTGTAACAGCAACAGACTATTAATTATCTGGACTCTCAAAAAATGGACTCTAAACAAATTCTTTCATGGATAAAACGAGTGTTTTATAAACTTTATTGTGCACCTTATGTCTACATCACAGAAGAGAGATTTTCAATAGTGATTATTTTCTTGACGCAGTAATACGCGAAAGATGATTGATTTGTGTATGCACCGTCATGGCATGCAAGACAGCTATCAGCTGTGATGTTGGCACACTTATGGATTCATCCCGTTATACAGTATATGTTTTTTACTATACAGACATCAGCGTGATTTCAACACTTTTCCGTTTAAAACACTTGATTTGTCAGCGGAGAATTGTGTTCACTCTACCCTTTTTGCTTTGGAGGATCACCGGGTTCTCAAATTTTTGGCCCATGATTTGGGGATCCCCCTCTTTTT]
[+] EMBL CD076924 [TTTATTTCTTAGTTAACAAATGGCAATTCAGTAGGATGTAACAGAAAAAATAAGACTAGCAGAGGACTGATCAAGTTAAAATCACAGTGAGATCGACCAGGAATGAATATATATATATATATATATGTATATATATATATATATATATGGTCGATTTGATGAGGAGAAATTTTTCGTATCATTGCCCGTATACATTTCTCATGAGATGAGCAAATGGTTGTAACAGCAACAGACTATTAATTATCTGGACTCTCAAAAAATGGACTCTAAACAAATTCTTTCATGGATAAAACGAGTGTTTTATAAACTTTATTGTGCACCTTATGTCTACATCACAGAAGAGAGATTTTCAATAGTGATTATTTTCTTGACGCAGTAATACGCGAAAGATGATTGATTTGTGTATGCACCGTCATGGCATGCAAGACAGCTATCAGCTGTGATGTTGGCACACTTATGGATTCATCCCGTTATACAGTATATGTTTTTTACTATACAGACATCAGCGTGATTTCAACACTTTTCCGTTTAAAACACTTGATTTGTCAGCGGAGAATTGTGTTCACTCTACCCTTTTTGCTTTGGAGGATCACCGGGTTCTCAAATTTTTGGCCCATGATTTGGGGATCCCCCTCTTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8518#0 ATTTATATTTTGAGACTGAATTGGACAATTACGTTGACATGAGAATTAATTGATTAGTGA 60
consensus_8518#1 ------------------------------------------------------------
consensus_8518#0 CTTAAACAAATGAACTCTTTTTTTAAAGCTGAACACAATGAAAAGATATGCTCCTAATAA 120
consensus_8518#1 ------------------------------------------------------------
consensus_8518#0 TAAATAGCAGGCTTAAATTATAGATTTTGTATATTATAAGTATCTTGTATGATATGTGTT 180
consensus_8518#1 ------------------------------------------------------------
consensus_8518#0 AGAGGTCGATGATTTAATTCCTTCAAAATTCTGAGTAAAAATTACATTCAATCGTAGTAA 240
consensus_8518#1 ------------------------------------------------------------
consensus_8518#0 TATAACGATATAAAATGAATTCAATATAATAAACGAAAGATAATATTGTACTCAGACAAC 300
consensus_8518#1 ------------------------------------------------------------
consensus_8518#0 CATCATTGACAATGTTTTTAGATCAAAAGAATACGATTTATATTTCACTTTATTTTTTAG 360
consensus_8518#1 ------------------------------------------------TTTATTTCTTAG 12
******* ****
consensus_8518#0 TTAACAAATTGTAATTCAGTAGGATGTAACAGAAAAAATAAAACAAGCAGAGGACTGAGC 420
consensus_8518#1 TTAACAAATGGCAATTCAGTAGGATGTAACAGAAAAAATAAGACTAGCAGAGGACTGATC 72
********* * ***************************** ** ************* *
consensus_8518#0 AAGTTAAAATCACAGTGAGATCGACCAGGAATGAATATATATATATATATATAT----AT 476
consensus_8518#1 AAGTTAAAATCACAGTGAGATCGACCAGGAATGAATATATATATATATATATATGTATAT 132
****************************************************** **
consensus_8518#0 ATATATATATATATATCGGCGATTTGATGAGGAAAAATTTTTCGTATCACTGTCCCTATA 536
consensus_8518#1 ATATATATATATATATGGTCGATTTGATGAGGAGAAATTTTTCGTATCATTGCCCGTATA 192
**************** * ************** *************** ** ** ****
consensus_8518#0 CATTTCTCATGAGATGAGTAAATTGTTGTTTCAGCAACAGATGAAGAATTAGCAGTAGTC 596
consensus_8518#1 CATTTCTCATGAGATGAGCAAATGGTTGTAACAGCAACAGACTATTAATTATCTGGACTC 252
****************** **** ***** ********** * ***** * * * **
consensus_8518#0 ACAAAAAATAGCCCCAAAATAAATTCTTTTATTTAAAAATCGTGATAATAATAATCATAA 656
consensus_8518#1 TCAAAAAATGGACTCTAAACAAATTCTTTCATGGATAAAACGAGTGTTTTATAAACTTTA 312
******** * * * *** ********* ** * *** ** * * **** * * *
consensus_8518#0 TAGTGCACATTATCTTTAGATGACAGAAGAGAGATTTTCAAAAGTAATTATTTTCTTGAT 716
consensus_8518#1 TTGTGCACCTTATGTCTACATCACAGAAGAGAGATTTTCAATAGTGATTATTTTCTTGAC 372
* ****** **** * ** ** ******************* *** *************
consensus_8518#0 GCAGTAA-ACGCAATTGATCATTGATTTGTGTATGTAGTGTCTTGGCAAGTAGGATAGCT 775
consensus_8518#1 GCAGTAATACGCGAAAGATGATTGATTTGTGTATGCACCGTCATGGCATGCAAGACAGCT 432
******* **** * *** *************** * *** ***** * * ** ****
consensus_8518#0 ATCAGCTGAAATACAGCTACGCTAACAAATCCATAAGCGAAATAGACTATATTGTTTTCT 835
consensus_8518#1 ATCAGCTGTGATGTTGGCACACTTATGGATTCATCC-CGTTATACAGTATAT-GTTTTTT 490
******** ** * ** ** * ** *** ** *** * ***** ***** *
consensus_8518#0 ACTATACTGACAAGAGCATCAACACAACCAGTTGTCCATACCAAACGACTGGCTTCAGCG 895
consensus_8518#1 ACTATACAGACATCAGCGTGATTTCAAC-ACTTTTCCGTTTAAAAC-ACTTGATTTGTCA 548
******* **** *** * * **** * ** *** * **** *** * ** *
consensus_8518#0 GTTGTTAATTTTTGTACACCAAATCCACATGATGTATTAATAATATTAACACTGATATCA 955
consensus_8518#1 GCGGAGAATTGT-GTTCACTCTACCCTTTT--TGCTTTGG-AGGATCACCGG-GTTCTCA 603
* * **** * ** *** * ** * ** ** * ** * * * * ***
consensus_8518#0 TTCATTTGACGGCAACAAGAATATGGAACTCCACAAGCTTCAGGGCTTATATTAGACTTA 1015
consensus_8518#1 AATTTTTGGCC----CATGATTTGGGGATCCCCCTCTTTTT------------------- 640
**** * ** ** * ** * ** * **
consensus_8518#0 TCACATGAAAAGAATCGACTAGCTGTCCAATCAAGATATGACTTAGGTCCGCAACAATTA 1075
consensus_8518#1 ------------------------------------------------------------
consensus_8518#0 AGCTCTTTTTGAATAAAGTCCATAAAGTTTGTTGTATCCTCAAACCCAAGTTCTCTATAT 1135
consensus_8518#1 ------------------------------------------------------------
consensus_8518#0 TGAGTAACAAAAGTAGTTTTGATTAACTCTTCAAGCCTGTGGATAGTTGATTCACGGTAC 1195
consensus_8518#1 ------------------------------------------------------------
consensus_8518#0 ACAAAGAACAATACACAGCAAACAACCTCTGTCAGAAAAAGCAACGTTAAAATAAAGTAA 1255
consensus_8518#1 ------------------------------------------------------------
consensus_8518#0 TAAAATCTCAGCAGACAAGTGTTTTCACGTANAGACCCGACAAAACCAGCCAGTGAAACA 1315
consensus_8518#1 ------------------------------------------------------------
consensus_8518#0 AATAAGGTTATGACCCCAACGACCATACAAATTACGGTTAAGTTGAAAAGCCAATGCAAT 1375
consensus_8518#1 ------------------------------------------------------------
consensus_8518#0 GCGACAGTTTTAGATTTCCATGGTATACCTCCCGACTCAGTAAATGCGATCACACCGAAT 1435
consensus_8518#1 ------------------------------------------------------------
consensus_8518#0 ACAAGAAACACTGTTCCAATAGCTAAAAATATAAAGTTCGTCAAGCATAAAGAATACTTA 1495
consensus_8518#1 ------------------------------------------------------------
consensus_8518#0 ACCCATTGGTTAATGTAAGATATTCTATCACCAAAACGTCGATGATACCTATGTCCCATT 1555
consensus_8518#1 ------------------------------------------------------------
consensus_8518#0 TGATGCACAGAAAATGTATCAAAAACGCCAATATTTGGAAACCAATACTGTTCAACAAGA 1615
consensus_8518#1 ------------------------------------------------------------
consensus_8518#0 AAACACCTATTAAGAGGGCTGTGGGGTATACGCTGAAACAATACTGTTAGGAGCCAGGCA 1675
consensus_8518#1 ------------------------------------------------------------
consensus_8518#0 AACAACAAACAACCTTGAGACATTGAAGCTCCCTCTCTGGTTTCCGATGGCATCAATCAG 1735
consensus_8518#1 ------------------------------------------------------------
consensus_8518#0 CAATATCGTTAAGACGAACTAGTTTCAGTCCCAATTCGCAAAGAAAATAATGTTGGGTGG 1795
consensus_8518#1 ------------------------------------------------------------
consensus_8518#0 CTCTTGTTAGTCCTCAAAGCAGTGGTCTCCCAGTCGATCTAACTTTCTTTTAATTTAGTC 1855
consensus_8518#1 ------------------------------------------------------------
consensus_8518#0 AACAGATGAAGCTTCGGTCAATTGTTGAGATAAGGATTCTCACTAATTATTGATTCGATG 1915
consensus_8518#1 ------------------------------------------------------------
consensus_8518#0 AGAAGGTAGGTAATTAGTTGAGAAGTG 1942
consensus_8518#1 ---------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||