These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8520#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 702 fasta sequence [CGAGGCCAGAATCGGCACGAGGAATTTATATCCAGAGTATAAAGATGATGGATGAATAACATCTTTATATCCATATTTCAAAACTACTTATTTATTCGATGAGTAGTACAACTAGAAGGAATTGGAATGAATTGAGCAGAACAAGGTTGAATGGATAATGCTGGTAGGCAGCCTATACTCCTCCACGAAGAGTAACAGGAGTAAGTGA----CATTTCAACAGTTTTATTAAATCATGAAACTCCAACTTGAATCCACTTTGATTTGAACCAACTGAATTAATTTCAATGAAAGTAGTTGTAAAAATTTTCATAGTTTTTTCTCATTTAATTTACTTTTCTTCTTTTCGGTTTTCATAAACCATCCAGTTACTCTCTACATTACAACCAGCTATATTTTACCAATATATGTCACCACCAGCACCATCACATATCTTGATTGTTTTTGTAAATGATCTCACTGAAATACTCAATGGATCATCTTTTTGTTTCATGCGAATACATCAAAATCGCTTTAATATTACAATAATGCAGTACATATTGTTATAGCTGGATGTTGTTTGATCCAAACATTTCACACCATTGAACACATTTGAACTAATTGAAGTGAATTGTGAAACATGCATAATATATGTATCATAATGTTAAAATACTTGTATACATAAACAATTCCAATGTTCCTACAAAAATTAGGAATCGAAATTAGC] [+] EMBL CD083697 [CGAGGCCAGAATCGGCACGAGGAATTTATATCCAGAGTATAAAGATGATGGATGAATAACATCTTTATATCCATATTTCAAAACTACTTATTTATTCGATGAGTAGTACAACTAGAAGGAATTGGAATGAATTGAGCAGAACAAGGTTGAATGGATAATGCTGGTAGGCAGCCTATACTCCTCCACGAAGAGTAACAGGAGTAAGTGA CATTTCAACAGTTTTATTAAATCATGAAACTCCAACTTGAATCCACTTTGATTTGAACCAACTGAATTAATTTCAATGAAAGTAGTTGTAAAAATTTTCATAGTTTTTTCTCATTTAATTTACTTTTCTTCTTTTCGGTTTTCATAAACCATCCAGTTACTCTCTACATTACAACCAGCTATATTTTACCAATATATGTCACCACCAGCACCATCACATATCTTGATTGTTTTTGTAAATGATCTCACTGAAATACTCAATGGATCATCTTTTTGTTTCATGCGAATACATCAAAATCGCTTTAATATTACAATAATGCAGTACATATTGTTATAG ] [+] EMBL CD083974 [ TTTATATCCAGAGTATAAAGATGATGGATGAATAACATCTTTATATCCATATTTCAAAACTACTTATTTATTCGATGAGTAGTACAACTAGAAGGAATTGGAATGAATTGAGCAGAACAAGGTTGAATGGATAATGCTGGTAGGCAGCCTATACTCCTCCACGAAGAGTAACAGGAGTAAGTGA CATTTCAACAGTTTTATTAAATCATGAAACTCCAACTTGAATCCACTTTGATTTGAACCAACTGAATTAATTTCAATGAAAGTAGTTGTAAAAATTTTCATAGTTTTTTCTCATTTAATTTACTTTTCTTCTTTTCGGTTTTCATAAACCATCCAGTTACTCTCTACATTACAACCAGCTATATTTTACCAATATATGTCACCACCAGCACCATCACATATCTTGATTGTTTTTGTAA ] [-] EMBL CD075544 [ TATAAAGATGATGGATGAATAACATCTTTATATCCATATTTCAAAACTACTTATTTATTCGATGAGTAGTACAACTAGAAGGAATTGGAATGAATTGAGCAGAACAAGGTTGAATGGATAATGCTGGTAGGCAGCCTATACTCCTCCACGAAGAGTAACAGGAGTAAGTGAGTAGCATTTCAACAGTTTTATTAAATCATGAAACTCCAACTTGAATCCACTTTGATTTGAACCAACTGAATTAATTTCAATGAAAGTAGTTGTAAAAATTTTCATAGTTTTTTCTCATTTAATTTACTTTTCTTCTTTTCGGTTTTCATAAACCATCCAGTTACTCTTTACATTACAACCAGCTATATTTTACCAATATATGTCACCACCAGCACCATCACATATCTTGATTGTTTTTGTAAATGATCTCACTGAAATACTCAATGGATCATCTTTTTGTTTCATGCGAATACATCAAAATCGCTTTAATATTACAATAATGCAGTACATATTGTTATAGCTGGATGTTGTTTGATCCAAACATTTCACACCATTGAACACATTTGAACTAATTGAAGTGAATTGTGAAACATGCATAATATATGTATCATAATGTTAAAATACTTGTATACATAAACAATTCCAATGTTCCTACAAAAATTAGGAATCGAAATTAGC] consensusID : consensus_8520#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 692 fasta sequence [GCCTTTAATTCGGCACGCAGGGTATAAANGATGATGGATGAATAACATCTTTATATCCATATTTCAAAACTACTTATTTATTCGATGAGTAGTACAACTAGAAGGAATTGGAATGAATTGAGCAGAACAAGGTTGAATGGATAATGCTGGTAGGCAGCCTATACTCCTCCACGAAGAGTAACAGGAGTAAGTGAGTAGCATTTCAACAGTTTTATTAAATCATGAAACTCCAACTTGAATCCACTTTGATTTGAACCAACTGAATTAATTTCAATGAAAGTAGTTGTAAAAATTTTCATAGTTTTTTCTCATTTAATTTACTTTTCTTCTTTTCGGTTTTCATAAACCATCCAGTTACTCTCTACATTACAACCAGCTATATTTTACCAATATATGTCACCACCAGCACCATCACATATCTTGATTGTTTTTGTAAATGATCTCACTGAAATACTCAATGGATCATCTTTTTGTTTCATGCGAATACATCAAAATCGCTTTAATATTACAATAATGCAGTACATATTGTTATAGCTGGATGTTGTTTGATCCAAACATTTCACACCATTGAACACATTTGAACTAATTGAAGTGAATTGTGAAACATGCATAATATATGTATCATATTGTTAAAATACTTGTATACATAAACAATTCCAATGTTCCTACAAAAATTATATAAACGAAATTAG] [+] EMBL CD081813 [GCCTTTAATTCGGCACGCAGGGTATAAANGATGATGGATGAATAACATCTTTATATCCATATTTCAAAACTACTTATTTATTCGATGAGTAGTACAACTAGAAGGAATTGGAATGAATTGAGCAGAACAAGGTTGAATGGATAATGCTGGTAGGCAGCCTATACTCCTCCACGAAGAGTAACAGGAGTAAGTGAGTAGCATTTCAACAGTTTTATTAAATCATGAAACTCCAACTTGAATCCACTTTGATTTGAACCAACTGAATTAATTTCAATGAAAGTAGTTGTAAAAATTTTCATAGTTTTTTCTCATTTAATTTACTTTTCTTCTTTTCGGTTTTCATAAACCATCCAGTTACTCTCTACATTACAACCAGCTATATTTTACCAATATATGTCACCACCAGCACCATCACATATCTTGATTGTTTTTGTAAATGATCTCACTGAAATACTCAATGGATCATCTTTTTGTTTCATGCGAATACATCAAAATCGCTTTAATATTACAATAATGCAGTACATATTGTTATAGCTGGATGTTGTTTGATCCAAACATTTCACACCATTGAACACATTTGAACTAATTGAAGTGAATTGTGAAACATGCATAATATATGTATCATATTGTTAAAATACTTGTATACATAAACAATTCCAATGTTCCTACAAAAATTATATAAACGAAATTAG] [+] EMBL CD077851 [ ttatatacCAGAGTATAAA GATGATGGATGAATAACATCTTTATATCCATATTTCAAAACTACTTATTTATTCGATGAGTAGTACAACTAGAAGGAATTGGAATGAATTGAGCAGAACAAGGTTGAATGGATAATGCTGGTAGGCAGCCTATACTCCTCCACGAAGAGTAACAGGAGTAAGTGAGTAGCATTTCAACAGTTTTATTAAATCATGAAACTCCAACTTGAATCCACTTTGATTTGAACCAACTGAATTAATTTCAATGAAAGTAGTTGTA ] [+] EMBL AW017434 [ ATCCATATTTCAAAACTACTTATTTATTCGATGAGTAGTACAACTAGAAGGAATTGGAATGAATTGAGCAGAACAAGGTTGAATGGATAATGCTGGTAGGCAGCCTATACTCCTCCACGAAGAGTAACAGGAGTAAGTGAGTAGCATTTCAACAGTTTTATTAAATCATGAAACTCCAACTTGAATCCACTTTGATTTGAACCAACTGAATTAATTTCAATGAAAGTAGTTGTAAAAATTTTCATAGTTTTTTCTCATTTAATTTACTTTTCTTCTTTTCGGTTTTCATAAACCATCCAGTTACTCTCTACATTACAACCAGCTATATTTTACCAATATATGTCACCACCAGCACCATCACATATCTTGATTGTTTTTGTAAATGATCTCACTGAAATACTCAATGGATCATCTTTTTGTTTCATGCGAATACATCAAAATCGCTTTAATATTACAATAATGCAGTACATATTGTTATAGTTGGATGTTGTTTGATCCAAACATTTCACACCATTGAACACATTTGAACTAATTGAAGTGAATTGTGAAACATGCATAATATATG ] consensusID : consensus_8520#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence [TGTCCCCACCAGCACAATCACCTCCACCATCACATATCTTGACTGTTTTTGTAAATGATTTCACTGAAATACTCAATGGATCATCTTTTTGTTTAATGCGAATACATCAAAATCGCTCTAATATTACAATAATGCACTACATATTGTTATAGCTGGATGTTGTTTGATCCAAACATTTCACACCATTGAACACATTTGAACTAATTGAAGTGAATTGTGAAACATGCATAATATATGTATCATATTGTTAAAATACTTGTATACATAAACAATTCCAATGTTCCTATAAAGATTATATAANCGGAAAAAAAAAAAAAAA] [-] EMBL AI395629 [TGTCCCCACCAGCACAATCACCTCCACCATCACATATCTTGACTGTTTTTGTAAATGATTTCACTGAAATACTCAATGGATCATCTTTTTGTTTAATGCGAATACATCAAAATCGCTCTAATATTACAATAATGCACTACATATTGTTATAGCTGGATGTTGTTTGATCCAAACATTTCACACCATTGAACACATTTGAACTAATTGAAGTGAATTGTGAAACATGCATAATATATGTATCATATTGTTAAAATACTTGTATACATAAACAATTCCAATGTTCCTATAAAGATTATATAANCGGAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8520#0 CGAGGCCAGAATCGGCACGAGGAATTTA-TATCCAGAGTATAAAG-ATGATGGATGAATA 58 consensus_8520#1 ----------------GCCTTTAATTCGGCACGCAGGGTATAAANGATGATGGATGAATA 44 consensus_8520#2 ------------------------------------------------------------ consensus_8520#0 ACATCTTTATATCCATATTTCAAAACTACTTATTTATTCGATGAGTAGTACAACTAGAAG 118 consensus_8520#1 ACATCTTTATATCCATATTTCAAAACTACTTATTTATTCGATGAGTAGTACAACTAGAAG 104 consensus_8520#2 ------------------------------------------------------------ consensus_8520#0 GAATTGGAATGAATTGAGCAGAACAAGGTTGAATGGATAATGCTGGTAGGCAGCCTATAC 178 consensus_8520#1 GAATTGGAATGAATTGAGCAGAACAAGGTTGAATGGATAATGCTGGTAGGCAGCCTATAC 164 consensus_8520#2 ------------------------------------------------------------ consensus_8520#0 TCCTCCACGAAGAGTAACAGGAGTAAGTGA----CATTTCAACAGTTTTATTAAATCATG 234 consensus_8520#1 TCCTCCACGAAGAGTAACAGGAGTAAGTGAGTAGCATTTCAACAGTTTTATTAAATCATG 224 consensus_8520#2 ------------------------------------------------------------ consensus_8520#0 AAACTCCAACTTGAATCCACTTTGATTTGAACCAACTGAATTAATTTCAATGAAAGTAGT 294 consensus_8520#1 AAACTCCAACTTGAATCCACTTTGATTTGAACCAACTGAATTAATTTCAATGAAAGTAGT 284 consensus_8520#2 ------------------------------------------------------------ consensus_8520#0 TGTAAAAATTTTCATAGTTTTTTCTCATTTAATTTACTTTTCTTCTTTTCGGTTTTCATA 354 consensus_8520#1 TGTAAAAATTTTCATAGTTTTTTCTCATTTAATTTACTTTTCTTCTTTTCGGTTTTCATA 344 consensus_8520#2 ------------------------------------------------------------ consensus_8520#0 AACCATCCAGTTACTCTCTACATTACAACCAGCTATATTTTACCAATATATGTCACCACC 414 consensus_8520#1 AACCATCCAGTTACTCTCTACATTACAACCAGCTATATTTTACCAATATATGTCACCACC 404 consensus_8520#2 --------------------------------------TGTCCCCACCAGCACAATCACC 22 * * ** * * **** consensus_8520#0 AGCACCATCACATATCTTGATTGTTTTTGTAAATGATCTCACTGAAATACTCAATGGATC 474 consensus_8520#1 AGCACCATCACATATCTTGATTGTTTTTGTAAATGATCTCACTGAAATACTCAATGGATC 464 consensus_8520#2 TCCACCATCACATATCTTGACTGTTTTTGTAAATGATTTCACTGAAATACTCAATGGATC 82 ****************** **************** ********************** consensus_8520#0 ATCTTTTTGTTTCATGCGAATACATCAAAATCGCTTTAATATTACAATAATGCAGTACAT 534 consensus_8520#1 ATCTTTTTGTTTCATGCGAATACATCAAAATCGCTTTAATATTACAATAATGCAGTACAT 524 consensus_8520#2 ATCTTTTTGTTTAATGCGAATACATCAAAATCGCTCTAATATTACAATAATGCACTACAT 142 ************ ********************** ****************** ***** consensus_8520#0 ATTGTTATAGCTGGATGTTGTTTGATCCAAACATTTCACACCATTGAACACATTTGAACT 594 consensus_8520#1 ATTGTTATAGCTGGATGTTGTTTGATCCAAACATTTCACACCATTGAACACATTTGAACT 584 consensus_8520#2 ATTGTTATAGCTGGATGTTGTTTGATCCAAACATTTCACACCATTGAACACATTTGAACT 202 ************************************************************ consensus_8520#0 AATTGAAGTGAATTGTGAAACATGCATAATATATGTATCATAATGTTAAAATACTTGTAT 654 consensus_8520#1 AATTGAAGTGAATTGTGAAACATGCATAATATATGTATCATATTGTTAAAATACTTGTAT 644 consensus_8520#2 AATTGAAGTGAATTGTGAAACATGCATAATATATGTATCATATTGTTAAAATACTTGTAT 262 ****************************************** ***************** consensus_8520#0 ACATAAACAATTCCAATGTTCCTACAAAAATTAGG-AATCGAAATTAGC-------- 702 consensus_8520#1 ACATAAACAATTCCAATGTTCCTACAAAAATTATATAAACGAAATTAG--------- 692 consensus_8520#2 ACATAAACAATTCCAATGTTCCTATAAAGATTATATAANCGGAAAAAAAAAAAAAAA 319 ************************ *** **** ** ** ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||