These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8527#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 627 fasta sequence [TCAATTGACTTATCACCCTTAAATTTGTTTACTATACA-TATGTGTGTAATGA-TAGGTCTACAATGACATAAAAGGAATAATGAATACAATATAATAATAATAAGAAGAATAATTTATTTGTGCATTCCTATGTTTGATCCCGTGTTTATTATGATTCAGTTATTCTTTTTGAATCGACAACTGAATCTCTATGTTAATGTGGTATGGCAACTCGAACTGATGTACGTACGTACGAAGTTCTACGTCGTGACTGACTGATTCTTACAACAACAA---------CAAAAAAAGTGTTCTGGTGTACCTGTTTTTCTTTCCCACTTTCTAAAATCAATAATTCATTGTTTAATCAATTATTCTATCCTAATCATTCCATCTATTTATGATTTATGCTTTGTACCATTTCATTCCTATAAAACTTACCTATCTCTGTCCTTCATTGTTTCACTCTGTATTTTCTGTTTTAGTAATTACTACTACTAATACTACTTATACTACTACTAGTACTACTACCAATACTACCAATACTTACTAGTACTACTACTAATACTATTACTCATACTACTACTACTCATACTACTACCACTACTACTACTACTCATACCGCTTACAATTCATTAGAAATCTTAAGTAATA] [+] EMBL AI976488 [TCAATTGACTTATCACCCTTAAATTTGTTTACTATACA TATGTGTGTAATGA TAGGTCTACAATGACATAAAAGGAATAATGAATACAATATAATAATAATAAGAAGAATAATTTATTTGTGCATTCCTATGTTTGATCCCGTGTTTATTATGATTCAGTTATTCTTTTTGAATCGACAACTGAATCTCTATGTTAATGTGGTATGGCAACTCGAACTGATGTACGTACGTACGAAGTTCTACGTCGTGACTGACTGATTCTTACAACAACAA CAAAAAAAGTGTTCTGGTGTACCTGTTTTTCTTTCCCACTTTCTAAAATCAATAATTCATTGTTTAATCAATTATTCTATCCTAATCATTCCATCTATTTATGATTTATGCTTTGTACCATTTCATTCCTATAAAACTTACCTATCTCTGTCCTTCATTGTTTCACTCTGTATTTTCTGTTTTAGTAATTACTACTACTAATACTACTTATACTACTACTAGTACTACTACCAATACTACCAATACTTACTAGTACTACTACTAATACTATTACTCATACTACTACTACTCATACTACTACCACTACTACTACT ] [+] EMBL BF936701 [ TATCACCCTTAAATTTGTTTACTATACACTATGTGTGTAATGACTAGGTCTACAATGACATAAAAGGAATAATGAATACAATATAATAATAATAAGAAGAATAATTTATTTGTGCATTCCTATGTTTGATCCCGTGTTTATTATGATTCAGTTATTCTTTTTGAATCGACAACTGAATCTCTATGTTAATGTGGTATGGCAACTCGAACTGATGTACGTACGTACGAAGTTCTACGTCGTGACTGACTGATTCTTACAACAACAA CAAAAAAAGTGTTCTGGTGTACCTGTTTTTCTTTCCCACTTTCTAAAATCAATAATTCATTGTTTAATCAATTATTCTATCCTAATCATTCCATCTATTTATGATTTATGCTTTGTACCATTTCATTCCTATAAAACTTACCTATCTCTGTCCTTCATTGTTTCACTCTGTATTTTCTGTTTTAGTAATTACTACTACTAATACTACTTATACTACTACTAGTACTACTACCAATACTACCAATACTTACTAGTACTACTACTAATACTATTACTCATACTACTACTACTCATACTACTACCACTACTACTACTACTCATACCGCTTACAATTCATTAGAAATCTTAAGTAATA] [-] EMBL CD088308 [ AACTGATGTACGTACGTACGAAGTTCTACGTTGTGTCTGACTGATTCTTACAACAACAACAACAACAGCAAAAAAAGTGTTCTGGTGTACCTGTTTTTCTTTCCCACTTTCTAAAATCAATAATTCATTGTTTAATCAATTATTCTATCCTAATCACTCCATCTATTTATGATTTATGCTTTGTACCATTTCATTCCTATAAAACTTACCTATCTCTGTCCTTCATTGTTTCACTCTGTATTTTCTGTTTTAGTAATTACTACTACTAATACTACTTATACTACTACTAGTACTACTACCAATACTACCAATACTTACTAGTACTACTACTAATACTATTACTCATACTACTACTACTCATACTACTAC ] consensusID : consensus_8527#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 542 fasta sequence [ATGACTTACTTC-ACTGTAGCATAGGCCGCCGACAAGCATTCTACAACCCAATCTTTCCTGGACCTTCCATTCTAGTTCTATTCAGTTTTTGTTCATTCTTCTCATGTCAGTTTCCATTTCTCGGAATAATTTGTTCTTTGGTCTTCTTCTTCTCCTTTGACCCTCAGGATTCCATGTGAGGGCTTGTTTTGTGACACAGTTGGGTGATTTCCTCAATGTGTGTCCTATCCACTTCCAGTGCTTCTTCCTGATTTCTTCCTCCACTGAAATCTGGTTTATTCTGTCCCACAGTGGGTTGCTGCTGATAGTGTCTGGCCAACTCGCTAAAAAAAAGCTAACCAGAAAACATATTATTCAAAAATATTGATAGGTTAAACATACTAATTCTCTTCGTATCTATGGGTATAATGATGATGATGATGATGAGCATATTATTAATAATAATAAAGGTGAAATAAATAATTTCATTGTTGAAACATGAAACAATGGTCAGTATTGTGATTTTAATTGGCAATTATATTTTCTCCTTAATATGAGAAAGT] [+] EMBL CD084737 [ATGACTTACTTCAACTGTAGCATAGGCCGTCGACAAGCATTCTACAACCCAATCTTTCCTGGACCTTCCATTCTAGTTCTATTCAGTTTTTGTTCATTCTTCTCATGTCAGTTTCCATTTCTCGGAATAATTTGTTCTTTGGTCTTCTTCTTCTCCTTTGACCCTCAGGATTCCATGTGAGGGCTTGTTTTGTGACACAGTTGGGTGATTTCCTCAATGTGTGTCCTATCCACTTCCAGTGCTTCTTCCTGATTTCTTCCTCCACTGAAATCTGGTTTATTCTGTCCCACAGTGGGTTGCTGCTGATAGTGTCTGGCCAACTCGCTAAAAAAAAGCTAACCAGAAAACATATTATTCAAAAATATTGATAGGTTAAACATACTAATTCTCTTCGTATCTATGGGTATAATGATGATGATGATGATGAGCATATTATTAATAATAATAAAGGTGAAATAAATAATTTCATTGTTGAAACATGAAACAATGGTCAGTATTGTGATTTTAATTGGCAATTATATTTTCTCCTTAATATGAGAAAGT] [+] EMBL CD084802 [ CTTACTTC AATGTAGCATAGGCCGCCGACAAGCATTCTACAACCCAATCTTTCCTGGACCTTCCATTCTAGTTCTATTCAGTTTTTGTTCATTCTTCTCATGTCAGTTTCCATTTCTCGGAATAATTTGTTCTTTGGTCTTCTTCTTCTCCTTTGACCCTCAGGATTCCATGTGAGGGCTTGTTTTGTGACACAGTTGGGTGATTTCCTCAATGTGTGTCCTATCCACTTCCAGTGCTTCTTCCTGATTTCTTCCTCCACTGAAATCTGGTTTATTCTGTCCCACAGTGGGTTGCTGCTGATAGTGTCTGGCCAACTCGCTAAAAAAAAGCTAACCAGAAAACATATTATTCAAAAATATTGATAGGTTAAACATACTAATTCTCTTCGTATCTATGGGTATAATGATGATGATGATGATGAGCATATTATTAATAATAATAAAGGTGAAATAAATAATTTCATTGTTGAAACATGAAACAATGGTCAGTATTGTGATTTTAATTGGCAATTATATTTTCTCCTTAATATGAGAAA ] [+] EMBL CD084749 [ CTTACTTC ACTGTAGCATAGGCCGCCGACAAGCATTCTACAACCCAATCTTTCCTGGACCTTCCATTCTAGTTCTATTCAGTTTTTGTTCATTCTTCTCATGTCAGTTTCCATTTCTCGGAATAATTTGTTCTTTGGTCTTCTTCTTCTCCTTTGACCCTCAGGATTCCATGTGAGGGCTTGTTTTGTGACACAGTTGGGTGATTTCCTCAATGTGTGTCCTATCCACTTCCAGTGCTTCTTCCTGATTTCTTCCTCCACTGAAATCTGGTTTATTCTGTCCCACAGTGGGTTGCTGCTGATAGTGTCTGGCCAACTCGCTAAAAAAAAGCTAACCAGAAAACATATTATTCAAAAATATTGATAGGTTAAACATACTAATTCTCTTCGTATCTATGGGTATAATGATGATGATGATGATGAGCATATTATTAATAATAATAA ] consensusID : consensus_8527#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 283 fasta sequence [ATAGTAGTTCTGCGGACGGAGGCTACGGTGGTCAAGGTGGATATGACGGTTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGG] [+] EMBL CD145890 [ATAGTAGTTCTGCGGACGGAGGCTACGGTGGTCAAGGTGGATATGACGGTTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8527#0 TCAATTGACTTATCACCCTTAAATTTGTTTACTATACATATGTGTGTAATGATAGGTCTA 60 consensus_8527#1 ------------------------------------------------------------ consensus_8527#2 ------------------------------------------------------------ consensus_8527#0 CAATGACATAAAAGGAATAATGAATACAATATAATAATAATAAGAAGAATAATTTATTTG 120 consensus_8527#1 --ATGACTTACTT----CACTG--TAGCATAGGCCGCCGACAAGCATTCTA--CAACCCA 50 consensus_8527#2 ------------------------------------------------------------ consensus_8527#0 TGCATTCCT--ATGTTTGATCCCGTGTTTATTATGATTCAGTT-ATTCTTTTTGAATCGA 177 consensus_8527#1 ATCTTTCCTGGACCTTCCATTCTAGTTCTATTCAGTTTTTGTTCATTCTTCTCATGTCAG 110 consensus_8527#2 ------------------------------------------------------------ consensus_8527#0 CAACTGAATCTCTATGTTAATGTGGTATGGCAACTCGAACTGATGTACGTACGTACGAAG 237 consensus_8527#1 TTTCCATTTCTC-GGAATAATTTGTTCTTTGGTCTTCTTCTTCTCCTTTGACCCTCAGGA 169 consensus_8527#2 ---------------------------------------ATAGTAGTTCTGCGGACGGAG 21 * * * * consensus_8527#0 TTCTACGTCGTGACTGACTGATTCTTACAACAACAACAAAAAAAGTGTTCTGGTGTACCT 297 consensus_8527#1 TTCCATGTGAGGGCTTGTT-----TTGTGACA-CAGTTGGGTGATTTCCTCAATGTGTGT 223 consensus_8527#2 G-CTACGGTG-GTCAAGGTGGATATGACGGTT-CAGGAGAAACGAAGGAGGAGAAGACGA 78 * * * * * * * ** consensus_8527#0 GTTTTTCTTTCCCACTTTCTAAAATCAATAATTCATTGTTTAATCAATTATTCTATCCTA 357 consensus_8527#1 CCTATCCACTTCCAGTGCTTC---TTCCTGATTTCTTCCTCCACTGA--AATCTGGTTTA 278 consensus_8527#2 ACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTG 138 * * * * * * * consensus_8527#0 ATCATTCCATCTATTTATGATTTATGCTTTGTACCATTTCATTCCTATAAAACTTACCTA 417 consensus_8527#1 TTCTGTCCCACAGTGGGTTGCTGCTGATA-GTGTCTGGCCAACTCGCTAAAAAAAAGCTA 337 consensus_8527#2 A-CGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCAC 197 * * * * * ** * * * ** * * * consensus_8527#0 TCTCTGTCCTTCATTGTTTCACTCTGTATTTTCTGTTTTAGTAATTACTACTACTAATAC 477 consensus_8527#1 ACCAGAAAACATATTATTCAAAA--ATATTGATAGGTTAAACA--TACTAATTCTCTTCG 393 consensus_8527#2 TCTCGGAC---CACTGGGCGAATCGACGACACCTGGAGAAGAGG-AGTTGGTG--AACGT 251 * * * * * * * * consensus_8527#0 TACTTATACTACTACTAGTACTACTACCAATACTACCAATACTTACTAGTACTACTACTA 537 consensus_8527#1 TATCTATGGGTATAATGATGATGATGATGATGAGCATATTA-TTAATAATAATAAAGGTG 452 consensus_8527#2 GACGGACAAACAGGGTGTAGTTGTTGGTCAGG---------------------------- 283 * * * * * * consensus_8527#0 ATACTATTACTCATACTACTACTAC-TCATACTACTACCACTACTACTACTACTCATACC 596 consensus_8527#1 AAATAAATAATTTCATTGTTGAAACATGAAACAATGGTCAGTATTGTGATTTTAATTGGC 512 consensus_8527#2 ------------------------------------------------------------ consensus_8527#0 GCTTACAATTCATTAGAAATCTTAAGTAATA 627 consensus_8527#1 AATTATATTTTCTCCTTAATATGAGAAAGT- 542 consensus_8527#2 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||