These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8530#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1081 fasta sequence [GTCAAGTTTGAAACGCTATTCAGTGACTGGTGAAGATTTGGGAGGACGATTTTTAAAATTGCTACATTCTTCAAAGATATCTGAACAGAACAATGCATGTCTTCCAGTGGGAACACCATTAGTTTGCAATTATTTGCGAGTAGCTTTAGCAGCACTTCCAAGTGCTATTGCTGCACCTTTACTCCGTCAAGTGAGTCGTCCACATGAAGTATTAGCAT-GGGAAAAATTGATCAAAGATGCTATCACTTCAGCAACCAACCAAATTAGCAATTTAGCCCCAATAAGTACAGTTCATTTACGTCGTCATCAAACATACTCAGCACAGCACAATCGTAGACTAGTTAAACAAGTCACCATGGAAGCTGATCTTGACTCCCCAACATATATTCGTCAGTCGACTCCTTCGAATCGACCGTTTACCATGGT-CTCTATGTCACCTAGCCTCTATTATACACCGAATGATTCAATTGTGGATGAAACAAAGAAGGTTACAAACAGTTTATCATTATCACAGAAATCATTAACCTTTTCAAACGAAGCAATTCCTGAAGAACCAATGGAAATTATCCAGTGCGCACGGAAAATTGCTGGTGTTCATTCAAGTGCTCCTTTGTGTAATGTTAAATCAAGGACTAGCANAACACTAGATGAATTGGTAAATCACGAGAATTCTGCTAATGGTCTAGTAGACAATTCAATGTACAATATCCTCGGACATAAATCTTTGAAAACTGGATTCAGTACACTAGACGATTGGTTTAAAGACCTCCGGATACCCGATGAAGACCGTGCCAAACTTCGTCGAAATCACATTGTTGATGAAGAAGACTTCTTAGATGCTATAACGAAAGAAGACTTGTGGAAGATGAGTNTAAGTGGTGGGACAGTGCTTCGCCTTTGGAGAACATACAGAANATCCGTTCAATGGAAATATGGTCTCATGAAAAATTCATGAATNNTGATCACATTCTTCTACAGAGCCTATATTTTTACTAGACATTTATCTCACACTTGATACCCCAACTGAANTGTGCCTTATTTANTATAGTATTTAAAACCGATGCTCAATTCAAAAGGTACT] [+] EMBL CD079089 [GTCAAGTTTGAAACGCTATTCAGTGACTGGTGAAGATTTGGGAGGACGATTTTTAAAATTGCTACATTCTTCAAAGATATCTGAACAGAACAATGCATGTCTTCCAGTGGGAACACCATTAGTTTGCAATTATTTGCGAGTAGCTTTAGCAGCACTTCCAAGTGCTATTGCTGCACCTTTACTCCGTCAAGTGAGTCGTCCACATGAAGTATTAGCAT GGGAAAAATTGATCAAAGATGCTATCACTTCAGCAACCAACCAAATTAGCAATTTAGCCCCAATAAGTACAGTTCATTTACGTCGTCATCAAACATACTCAGCACAGCACAATCGTAGACTAGTTAAACAAGCCACCATGGAAGCTGATCTTGACTCCCCAACATATATTCGTCAGTCGACTCCTTCGAATCGACCGTTTACCATGGT CTCTATGTCACCTAGCCTCTATTATACACCGAATGATTCAATTGTGGATGAAACAAAGAAGGTTACAAACAGTTTATCATTATCACAGANATCATTAACCTTTTCANACGAAGCAATTCCTGAAGAACCAATGGAAATTATCCAGTGCGCACGGA ] [+] EMBL CD078926 [ AGAACAATGCATGTCTTCCAGTGGGAACACCATTAGTTTGCAATTATTTGCGAGTAGCTTTAGCAGCACTTCCAAGTGCTATTGCTGCACCTTTACTCCGTCAAGTGAGTCGTCCACATGAAGTATTAGCAT GGGAAAAATTGATCAAAGATGCTATCACTTCAGCAACCAACCAAATTAGCAATTTAGCCCCAATAAGTACAGTTCATTTACGTCGTCATCAAACATACTCAGCACAGCACAATCGTAGACTAGTTAAACAAGTCACCATGGAAGCTGATCTTGACTCCCCAACATATATTCGTCAGTCGACTCCTTCGAATCGACCGTTTACCATGGT CTCTATGTCACCTAGCCTCTATTATACACCGAATGATTCAATTGTGGATGAAACAAAGAAGGTTACAAACAGTTTATCATTATCACAGAAATCATTAACCTTTTCAAACGAAGCAATTCCTGAAGAACCAATGGAAATTATCCAGTGCGCACTGAAAATTGCTGGTGTTCATTCAAGTGCTCCTTTGTGTAATGTTAAATCAAGGACTAGCANAACACTAGATGAATTGGTAAATCACGAGAATTCTGCTAATGGTCTAGTAGACAATTCA ] [+] EMBL CD078917 [ AGAACAATGCATGTCTTCCAGTGGGAACACCATTAGTTTGCAATTATTTGCGAGTAGCTTTAGCAGCACTTCCAAGTGCTATTGCTGCACCTTTACTCCGTCAAGTGAGTCGTCCACATGAAGTATTAGCAT GGGAAAAATTGATCAAAGATGCTATCACTTCAGCAACCAACCAAATTAGCAATTTAGCCCCAATAAGTACAGTTCATTTACGTCGTCATCAAACATACTCAGCACAGCACAATCGTAGACTAGTTAAACAAGTCACCATGGAAGCTGATCTTGACTCCCCAACATATATTCGTCAGTCGACTCCTTCGAATCGACCGTTTACCATGGT CTCTATGTCACCTAGCCTCTATTATACACCGAATGATTCAATTGTGGATGAAACAAAGAAGGTTACAAACAGTTTATCATTATCACAGAAATCATTAACCTTTTCAAACGAAGCAATTCCTGAAGAACCAATGGAAATTATCCAGTGCGCACTGAAAATTGCTGGTGTTCATTCAAGTGCTCCTTTGTGTAATGGTAAATCAAGGACTAGCANAACA ] [+] EMBL CD080221 [ GAAGTATTAACATGGGGAAAAATGGATCAAAGATGCTATCACTTCAGCAACCAACCAAATTAGCAGTTTAGCCCCAATAAGTACAGGTCATTTACGTCGTCATCAGACGTACTCAGCACAGCACAATCGTAGACTAGTTAAACAGGTCACCATGGAAGCTGATCTTGACTCCCCAACATATATGCGTCAGTCGACTCCTTCGAATCGACCGTTTACCATGGTACTGTATGTCACCTAGCCTCTATTATACACCGAATGATTCAATTGTGGATGAAACAAAGAAGGTTACAAACAGTTTATCATTATCACAGAAATCATTAACCTTTTCAAACGAAGCAATTCCTGAAGAACCAATGGAAATTATCCAGTGCGCACGGAAAATTGCTGGTGTTCATTCAAGTGCTCCTTTGTGTAATGTTAAATCAAGGACTAGCAAAACACTAGATGAATTGGTAAATCACGAGAATTCTGCTAATGGTCTAGTAGACAATTCAATGTACAATATCCTCGGACATAAATCTTTGAAAACTGGATTCAGTACACTAGACGATTGGTTTAAAGACCTCCGGATACCCGATGAAGACCGTGCCAAACTTCGTCGAAATCACATTGTTGATGAAGAAGACTTCTTAGATGCTATAACGAAAGAAGACTTGTGGAAGATGAGTNTAAGTGGTGGGACAGTGCTTCGCCTTTGGAGAACATACAGAANATCCGTTCAATGGAAATATGGTCTCATGAAAAATTCATGAATNNTGATCACATTCTTCTACAGAGCCTATATTTTTACTAGACATTTATCTCACACTTGATACCCCAACTGAANTGTGCCTTATTTANTATAGTATTTAAAACCGATGCTCAATTCAAAAGGTACT] consensusID : consensus_8530#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 518 fasta sequence [TGAAAATTGCTGGTGTTCATTCAAGTGCTCCTTTGTGTAATGTTAAATCAAGGACTAGCAAAACACTAGATGAATTGGTAAATCACGAGAATTCTGGTAATGGTTTAGTAGACAATTCAATGTACAATATCCTCGGACATAAATCTTTGAATACTGGATTCAGTACACTAGACGATTGGTTTAAAGACCTCCGGATACCCGATGAAGACCGTGCCAAACTTTGTTGAAATCACATTGTTGATGAAGAAGACTTTTTAGATGCTATAACGAAAGAAGACTTGTGGAAGATGAGTTTAAGTGGTGGAACAGTGCTTCGCCTTTGGAGAAACATACAGAAAATCCGTTCAATGGAATAATGTTTTCATGAAAAATTTCATGAATTTTGATCACAATTTTTTTACAGAGCCTATATTTTTACTAAGACATTTTATTTCACACCTTGATACCCAAACCTGAAATGTGCCTTTATTTTATAATAGTATTTTAAAACCCAGAATGCTCAAATATCAAAAAAGTTA] [-] EMBL CD073374 [TGAAAATTGCTGGTGTTCATTCAAGTGCTCCTTTGTGTAATGTTAAATCAAGGACTAGCAAAACACTAGATGAATTGGTAAATCACGAGAATTCTGGTAATGGTTTAGTAGACAATTCAATGTACAATATCCTCGGACATAAATCTTTGAATACTGGATTCAGTACACTAGACGATTGGTTTAAAGACCTCCGGATACCCGATGAAGACCGTGCCAAACTTTGTTGAAATCACATTGTTGATGAAGAAGACTTTTTAGATGCTATAACGAAAGAAGACTTGTGGAAGATGAGTTTAAGTGGTGGAACAGTGCTTCGCCTTTGGAGAAACATACAGAAAATCCGTTCAATGGAATAATGTTTTCATGAAAAATTTCATGAATTTTGATCACAATTTTTTTACAGAGCCTATATTTTTACTAAGACATTTTATTTCACACCTTGATACCCAAACCTGAAATGTGCCTTTATTTTATAATAGTATTTTAAAACCCAGAATGCTCAAATATCAAAAAAGTTA] [-] EMBL CD073383 [ AATTGCTGGTGTTCATTCAAGTGCTCCTTTGTGTAATGTTAAATCAAGGACTAGCAAAACACTAGATGAATTGGTAAATCACGAGAATTTTGCTAATGGTTTAGTAGACAATTCAATGTACAATATCCTCGGACATAAATCTTTGAATACTGGATTCAGTACACTAGACGATTGGTTTAAAGACCTCCGGATACCCGATGAAGACCGTGCCAAACTTTGTCGAAATCACATTGTTGATGAAGAAGACTTTTTAGATGCTATAACGAAAGAAGACTTGTGGAAGATGAGTTTAAGTGGTGGAACAGTGCTTTGCCTTTGGAGAAACATACAGAAAATCCGTTCAATGGAATAATGTTTTCATGAAAAATTTCATGAATTTTGATCACAATTTTTTTACAGAGCCTATATTTTTACTAAGACATTTTATTTCACACCTTGATACCCAAACCTGAAATGTGCCTTTATTTTATAATAGTATTTTAAAACCCAGAATGGTCAAATATCAAAAAAGTTA] consensusID : consensus_8530#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [TTCAATGTACAATATCCTCGGACATAAATCTTTGAAAACTGGATTCAGTACACTAGACGATTGGTTTAAAGACCTCCGGATACCCGATGAAGACCGTGCCAAAGTTAGTAACGTATTGATACATAACCTAGTCCAATTCACATTTTCCCTTGAAGATATGAATTTGATGCTTTTATGATAGCACAGACTTTTGATGAGTATTCCCCAATTTTTTTAATATGGAAATGTTTTATTTGTCCACAGAAATAAACAAACATCCATGGGATGACTGGGTACAACGCCGTTTGCATTCCAGTTTAACTTTATTTGAAAAATGACAGAAATGTTTGGTATTTTGAATCAATCATTTTGAAGTTTTCGATTGAAAAAGTTTTTGTAGATGAACATGACAAATGAAGGATTTGGTAAGAGCCTTTACAGGAAATGTAGGAATTTGCGGAGCGTTTTATGCATATGAAATGAAATTTTTGTAAACACAAAAACCTGGTTTATGAATATAAAGCG] [-] EMBL CD073543 [TTCAATGTACAATATCCTCGGACATAAATCTTTGAAAACTGGATTCAGTACACTAGACGATTGGTTTAAAGACCTCCGGATACCCGATGAAGACCGTGCCAAAGTTAGTAACGTATTGATACATAACCTAGTCCAATTCACATTTTCCCTTGAAGATATGAATTTGATGCTTTTATGATAGCACAGACTTTTGATGAGTATTCCCCAATTTTTTTAATATGGAAATGTTTTATTTGTCCACAGAAATAAACAAACATCCATGGGATGACTGGGTACAACGCCGTTTGCATTCCAGTTTAACTTTATTTGAAAAATGACAGAAATGTTTGGTATTTTGAATCAATCATTTTGAAGTTTTCGATTGAAAAAGTTTTTGTAGATGAACATGACAAATGAAGGATTTGGTAAGAGCCTTTACAGGAAATGTAGGAATTTGCGGAGCGTTTTATGCATATGAAATGAAATTTTTGTAAACACAAAAACCTGGTTTATGAATATAAAGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8530#0 GTCAAGTTTGAAACGCTATTCAGTGACTGGTGAAGATTTGGGAGGACGATTTTTAAAATT 60 consensus_8530#1 ------------------------------------------------------------ consensus_8530#2 ------------------------------------------------------------ consensus_8530#0 GCTACATTCTTCAAAGATATCTGAACAGAACAATGCATGTCTTCCAGTGGGAACACCATT 120 consensus_8530#1 ------------------------------------------------------------ consensus_8530#2 ------------------------------------------------------------ consensus_8530#0 AGTTTGCAATTATTTGCGAGTAGCTTTAGCAGCACTTCCAAGTGCTATTGCTGCACCTTT 180 consensus_8530#1 ------------------------------------------------------------ consensus_8530#2 ------------------------------------------------------------ consensus_8530#0 ACTCCGTCAAGTGAGTCGTCCACATGAAGTATTAGCATGGGAAAAATTGATCAAAGATGC 240 consensus_8530#1 ------------------------------------------------------------ consensus_8530#2 ------------------------------------------------------------ consensus_8530#0 TATCACTTCAGCAACCAACCAAATTAGCAATTTAGCCCCAATAAGTACAGTTCATTTACG 300 consensus_8530#1 ------------------------------------------------------------ consensus_8530#2 ------------------------------------------------------------ consensus_8530#0 TCGTCATCAAACATACTCAGCACAGCACAATCGTAGACTAGTTAAACAAGTCACCATGGA 360 consensus_8530#1 ------------------------------------------------------------ consensus_8530#2 ------------------------------------------------------------ consensus_8530#0 AGCTGATCTTGACTCCCCAACATATATTCGTCAGTCGACTCCTTCGAATCGACCGTTTAC 420 consensus_8530#1 ------------------------------------------------------------ consensus_8530#2 ------------------------------------------------------------ consensus_8530#0 CATGGTCTCTATGTCACCTAGCCTCTATTATACACCGAATGATTCAATTGTGGATGAAAC 480 consensus_8530#1 ------------------------------------------------------------ consensus_8530#2 ------------------------------------------------------------ consensus_8530#0 AAAGAAGGTTACAAACAGTTTATCATTATCACAGAAATCATTAACCTTTTCAAACGAAGC 540 consensus_8530#1 ------------------------------------------------------------ consensus_8530#2 ------------------------------------------------------------ consensus_8530#0 AATTCCTGAAGAACCAATGGAAATTATCCAGTGCGCACGGAAAATTGCTGGTGTTCATTC 600 consensus_8530#1 --------------------------------------TGAAAATTGCTGGTGTTCATTC 22 consensus_8530#2 --------------------------TTCAATGTACAAT-ATCCTCGGACATAAATCTTT 33 * * * * ** consensus_8530#0 AAGTGCTCCTTTGTGTAATGTTAAATCAAGGACTAGCANAACACTAGATGAATTG-GTAA 659 consensus_8530#1 AAGTGCTCCTTTGTGTAATGTTAAATCAAGGACTAGCAAAACACTAGATGAATTG-GTAA 81 consensus_8530#2 GAAAACTGGATTCAGTA-CACTAGACGATTGGTTTAAAGACCTCCGGATACCCGATGAAG 92 * ** ** *** ** * * * * * * * * *** * * consensus_8530#0 ATCACGAGAATTCTGCTAATGGTCTAGTAGACAA-----TTCAATGTACAATATCC-TCG 713 consensus_8530#1 ATCACGAGAATTCTGGTAATGGTTTAGTAGACAA-----TTCAATGTACAATATCC-TCG 135 consensus_8530#2 ACCGTGCCAAAGTTAGTAACGTATTGATACATAACCTAGTCCAATTCACATTTTCCCTTG 152 * * * ** * *** * * ** * ** * **** *** * *** * * consensus_8530#0 GACATAAATCTTTGAAAACTGGATTCAGTACACTAGACGATTGGTTTAAAGACCTCCGGA 773 consensus_8530#1 GACATAAATCTTTGAATACTGGATTCAGTACACTAGACGATTGGTTTAAAGACCTCCGGA 195 consensus_8530#2 AAGATATGAATTTGATGCTTTTAT--GATAGCACAGACTTTTGATGAGTATTCCCCAATT 210 * *** ***** * ** ** **** *** * * ** * consensus_8530#0 TACCCGATGAAGAC-CGTGCCAAACTTCGTCGAAATCACATTGTTGATGAAGAAGACTTC 832 consensus_8530#1 TACCCGATGAAGAC-CGTGCCAAACTTTGTTGAAATCACATTGTTGATGAAGAAGACTTT 254 consensus_8530#2 TTTTTAATATGGAAATGTTTTATTTGTCCACAGAAATAAACAAACATCCATG--GGATGA 268 * ** ** ** * * ** * * * * * * consensus_8530#0 TTAGATGCTATAACGAAAGAAGACTTGTGGAAGATGAGTNTAAGTGGTGGGACAGTGCTT 892 consensus_8530#1 TTAGATGCTATAACGAAAGAAGACTTGTGGAAGATGAGTTTAAGTGGTGGAACAGTGCTT 314 consensus_8530#2 CTGGGTACAACGCCGTTTGCATTCCAGTTTAACTTTATTTGAAAAATGACAGAAATGTTT 328 * * * * * ** * * * ** ** * * * ** * ** ** consensus_8530#0 CGCCTTTGGAG--AA-CATACAGAANATCCGTTCAATGGAAATATGGTCTCATGAAAAAT 949 consensus_8530#1 CGCCTTTGGAG--AAACATACAGAAAATCCGTTCAATGGAATAATGTTTTCATGAAAAAT 372 consensus_8530#2 GGTATTTTGAATCAATCATTTTGAAGTT---TTCGATTGAAAAA-GTTTTTGTAGATGAA 384 * *** ** ** *** *** * *** ** *** * * * * * * * consensus_8530#0 T-CATGAATNNTGATCACA-TTCTTCTACAGAGCCTATATTTTTACTA-GACATTT-ATC 1005 consensus_8530#1 TTCATGAATTTTGATCACAATTTTTTTACAGAGCCTATATTTTTACTAAGACATTTTATT 432 consensus_8530#2 --CATGA---CAAATGAAGGATTTGGTA-AGAGCCTTTACAGGAAATGTAGGAATTTGCG 438 ***** ** * * * ** ******* ** * * * ** consensus_8530#0 TCACAC-TTGATACCCCAAC-TGAANTGTGCCTTA--TTTANTATAGTATTT-AAAACC- 1059 consensus_8530#1 TCACACCTTGATACCCAAACCTGAAATGTGCCTTTATTTTATAATAGTATTTTAAAACCC 492 consensus_8530#2 GAGCGT-TTTATGC----ATATGAAATGAAATTTT----TGTAAACACA----AAAACCT 485 * ** ** * * **** ** ** * * * ****** consensus_8530#0 --GATGCTCAATTCAAAAGGTACT-- 1081 consensus_8530#1 AGAATGCTCAAATATCAAAAAAGTTA 518 consensus_8530#2 --GGTTTATGAATATAAAGCG----- 504 * * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||