These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8539#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1108 fasta sequence [CCAGCCAANAATTTGGCACGAGGTGCTTCGATAAAAAAGTCTTTGCTTTCCAGACCTCTCATCACTTATTTTCCGAATAATGGCTAACTTTTCGAGAGTGGCCGAGATTTTTGAGCAAGCATCCGTGGCGTTCGGTCGTTTGGCTCAGCTTACCTTAGATCTTAAGCAGTTCCAAGCGCAACAAAATGATGGGGATTCCAAGACCTGTGGGAAGTGGTCACAAAAGGAAGTTGAAGATCTCAAAGATGCTATCGGACGTTTCGGATCTGATCTGTCGAAGGTAGCTGAGGCTATCGAAACAAAGACCATTAACCAGATAAAACAAAAGCTAAAAACCCGGGCTTTCCAGGATGCTGGTCTTGGAGATATTTCCCTTGAAAACGAGGCTGTGGATACAGAAACCAAA-CCAAAAGCCACCACTCCAAATGCTACCCCAGTAGAACGTGGAAGACGTAAGCAAGCTTTGAATCAAATGTCTGAACCAGTAGACATGCATCCTCCTAAAAGATCCAGATCTAATGTCGACGATTTGAATGAATATACAAATTATGCATCTGAAGTAGAAGTTCAAGATAAAAAATCCAACCAACCGGCTAGTAACAATAAATCATATA-TAATGAAAATGTTACACCTCAAAAGAACGATGACGGTCACAATATTTTAAAACAGAAACCAGTTGGCAGTACACTATCTAGTGTTTTATCCAAACCGATATCACTTGCTAGATCAGATGTAAGCAATTTTGATGATCGTCATCGCAAAACAACAACACCAGTAAATGTTATAGGTTCTGGATATAGTGCGAATGAATCAAAGTATGAAGATTATGACAGCGATGACAGCGATTATGATGGTGCTGATGGTGGAGGTGGTCGTACACCTGGAGAAGATTATGAATCAGACGAAGAACAAGAGGAAGAGGAAGAAGAAGAAGAGGAAGCCGACGACAATGAGGATTACGATGAATAAACAGCAACAAATTGAATTATTAAATATTTGTGTATATGTCTTCATGATTGTTATTATTATTCATTATCATGTAAATTAGTGTTTATACTGATAAAATAAGTTAACGATATTAAAGAACTACAAAAAAAAAAAAAAAAAA] [+] EMBL CD079787 [CCAGCCAANAATTTGGCACGAGGTGCTTCGATAAAAAAGTCTTTGCTTTCCAGACCTCTCATCACTTATTTTCCGAATAATGGCTAACTTTTCGAGAGTGGCCGAGATTTTTGAGCAAGCATCCGTGGCGTTCGGTCGTTTGGCTCAGCTTACCTTAGATCTTAAGCAGTTCCAAGCGCAACAAAATGATGGGGATTCCAAGACCTGTGGGAAGTGGTCACAAAAGGAAGTTGAAGATCTCAAAGATGCTATCGGACGTTTCGGATCTGATCTGTCGAAGGTAGCTGAGGCTATCGAAACAAAGACCATTAACCAGATAAAACAAAAGCTAAAAACCCGGGCTTTCCAGGATGCTGGTCTTGGAGATATTTCCCTTGAAAACGAGGCTGTGGATACAGAAACCAAA CCAAAAGCCACCACTCCAAATGCTACCCCAGTAGAACGTGGAAGACGTAAGCAAGCTTTGAATCAAATGTCTGAACCAGTAGACATGCATCCTCCTAAAAGATCCAGATCTAATGTCGACGATTTGAATGAATATACAAATTATGCATCTGAAGTAGAAGTTCAAGATAAAAAATCCAACCAACCGGCTAGTAACAATAAATCATATA TAATGAAAATGTTACACCTCANAAGAACGATGACGGTCACAATATTTTAAAACAGAAACCAGTTGGCAGTACACTATCTAGTGTTTTATCCAAACCGATATCACTTGCTAGATCAGATGTAAGCAATTNTGATGA ] [-] EMBL CD074045 [ TACAGAAACCAAACCCAAAAGCCACCACTCCAAATGCTACCCCAGTAGAACGTGGAAGACGTAAGCAAGCTTTGAATCAAATGTCTGAACCAGTAGACATGCATCCTCCTAAAAGATCCAGATCTAATGTCGACGATTTGAATGAATATACAAATTATGCATCTGAAGTAGAAGTTCAAGATAAAAAATCCAACCAACCGGCTAGTAACAATAAATCATATA TAATGAAAATGTTACACCTCAAAAGAACGATGACGGTCACAATATTTTAAAACAGAAACCAGTTGGCAGTACACTATCTAGTGTTTTATCCAAACCGATATCACTTGCTAGATCAGATGTAAGCAATTTTGATGATCGTCATCGCAAAACAACAACACCAGTAAATGTTATAGGTTCTGGATATAGTGCGAATGAATCAAAGTATGAAGATTATGACAGCGATGACAGCGATTATGATGGTGCTGATGGTGGAGGTGGTCGTACACCTGGAGAAGATTATGAATCAGACGAAGAACAAGAGGAAGAGGAAGAAGAAGAAGAGGAAGCCGACGACAATGAGGATTACGATGAATAAACAGCAACAAATTGAATTATTAAATATTTGTGTATATGTCTTCATGATTGTTATTATTATTCA ] [+] EMBL CD088748 [ CCAAA CCAAAAGCCACCACTCCAAATGCTACCCCAGTAGAACGTGGAAGACGTAAGCAAGCTTTGAATCAAATGTCTGAACCAGTAGACATGCATCCTCCTAAAAGATCCAGATCTAATGTCGACGATTTGAATGAATATACAAATTATGCATCTGAAGTAGAAGTTCAAGATAAAAAATCCAACCAACCGGCTAGTAACAATAAATCATATAGTAATGAAAATGTTACACCTCAAAAGAACGATGACGGTCACAATATTTTAAAACAGAAACCAGTTGGCAGTACACTATCTAGTGTTTTATCCAAACCGATATCACTTGCTAGATCAGATGTAAGCAATTTTGATGATCGTCATCGCAAAACAACAACACCAGTAAATGTTATAGGTTCTGGATATAGTGCGAATGAATCAAAGTATGAAGATTATGACAGCGATGACAGCGATTATGATGGTGCTGATGGTGGAGGTGGTCGTACACCTGGAGAAGATTATGAATC ] [-] EMBL AI395395 [ ATTTTG TTGTTCTAATGGTGGAGGTGGTCGTACACCTGGAGAAGATTATGAATCAGACGAAGAACAAGAGGAAGAGGAAGAAGAAGAAGAGGAAGCCGACGACAATGAGGATTACGATGAATAAACAGCAACAAATTGAATTATTAAATATTTGTGTATATGTCTTCATGATTGTTATTATTATTCATTATCATGTAAATTAGTGTTTATACTGATAAAATAAGTTAACGATATTAAAGAACTACAAAAAAAAAAAAAAAAAA] consensusID : consensus_8539#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [TGACCGGTGACTAACTAAGACTCAGCACTACTTAGTTCAAATTCCTTCGCNTATTCTACATACTAAAGCTCTTATCTGTGAAATACTTTATACCTTCTGTTTCGATAACAAAGTCTTTGCTTTCCAGACCTCTCATCACTTATTTTCCGAATAATGGCTAACTTTTCGAGAGTGGCCGAGATTTTTGAGCAAGCATCCGTGGCGTTCGGTCGTTTGGCTCAGCTTACTTTAGATCTTAAGCAGTTCCAAGCGCAACAAAATGATGGGGATTCCAAGACCTGTGGGAAGTGGTCACAAAAGGAAGTTGAAGATCTCAAAGATGCTATCGGACGTTTCGGATCTGATCTGTCGAAGGTAGCTGAGGCTATCGAAACAAAGACCATTAACCAGATAAAACAAAAGCTAAAAAACCCGGGCTTTCCAGGATGCTGGTCTTGGAGATATTTCCCTTGAAAACGAGGCTGTGGATACAGAAACCAAACCAAAAGCCACCACTCCAAATGCTA] [-] EMBL CD191747 [TGACCGGTGACTAACTAAGACTCAGCACTACTTAGTTCAAATTCCTTCGCNTATTCTACATACTAAAGCTCTTATCTGTGAAATACTTTATACCTTCTGTTTCGATAACAAAGTCTTTGCTTTCCAGACCTCTCATCACTTATTTTCCGAATAATGGCTAACTTTTCGAGAGTGGCCGAGATTTTTGAGCAAGCATCCGTGGCGTTCGGTCGTTTGGCTCAGCTTACTTTAGATCTTAAGCAGTTCCAAGCGCAACAAAATGATGGGGATTCCAAGACCTGTGGGAAGTGGTCACAAAAGGAAGTTGAAGATCTCAAAGATGCTATCGGACGTTTCGGATCTGATCTGTCGAAGGTAGCTGAGGCTATCGAAACAAAGACCATTAACCAGATAAAACAAAAGCTAAAAAACCCGGGCTTTCCAGGATGCTGGTCTTGGAGATATTTCCCTTGAAAACGAGGCTGTGGATACAGAAACCAAACCAAAAGCCACCACTCCAAATGCTA] consensusID : consensus_8539#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 291 fasta sequence [CGAACTCAGTAGCATTTATCAGTGGACGATACCACGGGGTCGTTGCATAGAGCACATCATTCTGCAACAAATTCCAATGGGGAAGTATGACCGGTGACTAACTAAGACTCAGCACTACTTAGTTCAAATTCCTTCGCCTATTCTACATACTAAAGCTCTTATCTGTGAAATACTTTATACCTTCTGTTTCGATAAAAAAGTCTTTGCTTTCCAGACCTCTCATCACTTATTTTCCGAATAATGGCTAACTTTTCGAGAGTGGGCGAGATTTTTGAACCCCCGTCCATATGG] [+] EMBL CD144135 [CGAACTCAGTAGCATTTATCAGTGGACGATACCACGGGGTCGTTGCATAGAGCACATCATTCTGCAACAAATTCCAATGGGGAAGTATGACCGGTGACTAACTAAGACTCAGCACTACTTAGTTCAAATTCCTTCG ] [+] EMBL BG931011 [ cTCGTTGCATAGAGCACATCATTCTGCAACAAATTCCAATGGGGAAGTATGACCGGTGACTAACTAAGACTCAGCACTACTTAGTTCAAATTCCTTCGCCTATTCTACATACTAAAGCTCTTATCTGTGAAATACTTTATACCTTCTGTTTCGATAAAAAAGTCTTTGCTTTCCAGACCTCTCATCACTTATTTTCCGAATAATGGCTAACTTTTCGAGAGTGGGCGAGATTTTTGAACCCCCGTCCATATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8539#0 ------------------------------------------------------------ consensus_8539#1 TGACCGGTGACTAACTAAGACTCAGCACTACTTAGTTCAAATTCCTTCGCNTATTCTACA 60 consensus_8539#2 ------------------------------------------------------------ consensus_8539#0 --------------CCAGCCAANAATTTGGCACGAGGTGCTTCGATAAAAAAGTCTTTGC 46 consensus_8539#1 TACTAAAGCTCTTATCTGTGAAATACTTTATACCTTCTGTTTCGATAACAAAGTCTTTGC 120 consensus_8539#2 ---------------------CGAACTCAGTAGCATTTA--TCAGTGGACGATACCACGG 37 * * * * ** * * * * consensus_8539#0 TTTCCAGACCTCTCATCACTTATTTTCCGAATAATGGCTAACTTTTCGAGAGTGGCCGAG 106 consensus_8539#1 TTTCCAGACCTCTCATCACTTATTTTCCGAATAATGGCTAACTTTTCGAGAGTGGCCGAG 180 consensus_8539#2 GGTCGTTGCATAGAGCACATCATTCTGCAACAAATTCCAA--TGGGGAAGTATGACCGG- 94 ** * * * *** * * * *** * * * ** ** *** consensus_8539#0 ATTTTTGAGCAAGCATCCGTGGCGTTCGGT-CGTTTGGCTCAGCTTACCTTAGATCTTAA 165 consensus_8539#1 ATTTTTGAGCAAGCATCCGTGGCGTTCGGT-CGTTTGGCTCAGCTTACTTTAGATCTTAA 239 consensus_8539#2 -TGACTAACTAAGACTCAGCACTACTTAGTTCAAATTCCTTCGCCTATTCTACATACTAA 153 * * * *** ** * * ** * * ** ** ** ** ** *** consensus_8539#0 GCAGTTCCAAGCGCAACAAAATGATGGGGATTCCAAGACCTGTGGGAAGTGGTCACAAAA 225 consensus_8539#1 GCAGTTCCAAGCGCAACAAAATGATGGGGATTCCAAGACCTGTGGGAAGTGGTCACAAAA 299 consensus_8539#2 --AGCTCTTATCTGTGAAATACTTTATACCTTCTGTTTCGATAAAAAAGTCTTTGCT--- 208 ** ** * * ** * * *** * **** * * consensus_8539#0 GGAAGTTGAAGATCTCAAAGATGCTATCGGACGTTTCGGATCTGATCTGTCGAAGGTAGC 285 consensus_8539#1 GGAAGTTGAAGATCTCAAAGATGCTATCGGACGTTTCGGATCTGATCTGTCGAAGGTAGC 359 consensus_8539#2 -----TTCCAGACCTCTCATCACTTATTTTCCGAATAATGGCTAACTTTTCGAGAGTGGG 263 ** *** *** * *** ** * ** * * **** ** * consensus_8539#0 TGAGGCTATCGAAACAAAGACCATTAACCAGATAAAACAAAAGCTAAAAA-CCCGGGCTT 344 consensus_8539#1 TGAGGCTATCGAAACAAAGACCATTAACCAGATAAAACAAAAGCTAAAAAACCCGGGCTT 419 consensus_8539#2 CGAGATTTTTGAACCCCCGTCCATATGG-------------------------------- 291 *** * * *** * * **** consensus_8539#0 TCCAGGATGCTGGTCTTGGAGATATTTCCCTTGAAAACGAGGCTGTGGATACAGAAACCA 404 consensus_8539#1 TCCAGGATGCTGGTCTTGGAGATATTTCCCTTGAAAACGAGGCTGTGGATACAGAAACCA 479 consensus_8539#2 ------------------------------------------------------------ consensus_8539#0 AACCAAAAGCCACCACTCCAAATGCTACCCCAGTAGAACGTGGAAGACGTAAGCAAGCTT 464 consensus_8539#1 AACCAAAAGCCACCACTCCAAATGCTA--------------------------------- 506 consensus_8539#2 ------------------------------------------------------------ consensus_8539#0 TGAATCAAATGTCTGAACCAGTAGACATGCATCCTCCTAAAAGATCCAGATCTAATGTCG 524 consensus_8539#1 ------------------------------------------------------------ consensus_8539#2 ------------------------------------------------------------ consensus_8539#0 ACGATTTGAATGAATATACAAATTATGCATCTGAAGTAGAAGTTCAAGATAAAAAATCCA 584 consensus_8539#1 ------------------------------------------------------------ consensus_8539#2 ------------------------------------------------------------ consensus_8539#0 ACCAACCGGCTAGTAACAATAAATCATATATAATGAAAATGTTACACCTCAAAAGAACGA 644 consensus_8539#1 ------------------------------------------------------------ consensus_8539#2 ------------------------------------------------------------ consensus_8539#0 TGACGGTCACAATATTTTAAAACAGAAACCAGTTGGCAGTACACTATCTAGTGTTTTATC 704 consensus_8539#1 ------------------------------------------------------------ consensus_8539#2 ------------------------------------------------------------ consensus_8539#0 CAAACCGATATCACTTGCTAGATCAGATGTAAGCAATTTTGATGATCGTCATCGCAAAAC 764 consensus_8539#1 ------------------------------------------------------------ consensus_8539#2 ------------------------------------------------------------ consensus_8539#0 AACAACACCAGTAAATGTTATAGGTTCTGGATATAGTGCGAATGAATCAAAGTATGAAGA 824 consensus_8539#1 ------------------------------------------------------------ consensus_8539#2 ------------------------------------------------------------ consensus_8539#0 TTATGACAGCGATGACAGCGATTATGATGGTGCTGATGGTGGAGGTGGTCGTACACCTGG 884 consensus_8539#1 ------------------------------------------------------------ consensus_8539#2 ------------------------------------------------------------ consensus_8539#0 AGAAGATTATGAATCAGACGAAGAACAAGAGGAAGAGGAAGAAGAAGAAGAGGAAGCCGA 944 consensus_8539#1 ------------------------------------------------------------ consensus_8539#2 ------------------------------------------------------------ consensus_8539#0 CGACAATGAGGATTACGATGAATAAACAGCAACAAATTGAATTATTAAATATTTGTGTAT 1004 consensus_8539#1 ------------------------------------------------------------ consensus_8539#2 ------------------------------------------------------------ consensus_8539#0 ATGTCTTCATGATTGTTATTATTATTCATTATCATGTAAATTAGTGTTTATACTGATAAA 1064 consensus_8539#1 ------------------------------------------------------------ consensus_8539#2 ------------------------------------------------------------ consensus_8539#0 ATAAGTTAACGATATTAAAGAACTACAAAAAAAAAAAAAAAAAA 1108 consensus_8539#1 -------------------------------------------- consensus_8539#2 -------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||