cluster # 8557

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Schistosoma mansoni
cluster # 8557 cluster # 8557 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8557#0 length = 576 sequences # 4

consensus_8557#1 length = 503 sequences # 2
consensus_8557#2 length = 461 sequences # 1

consensusID : consensus_8557#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 576
fasta sequence

                              [TACTACTTTGCAAATAATATTACAGCGTAACATTAAATATTCGCTTCTCGATAACAACACTTAATGATTTATTCAAACATCTTGAAACGGTCAACCATGGGTTGGAGAAAATTGTGCAACTTCTAACTTTAAGGGAAGTTTCATGAAACAACAAACAGTTGTCACTTATTAGTTTCCAAATCCAAGGCTTAATACTGACTGAATATCAAGTCCCCAGTGTGTGCTGAATAAGAAATGTCATAATGCCATTCAACATATAAATGATCTCCCACCATGTAGACCGACATGATAACACAAATACAATACCTTGAGATTCTCGGAAAATCTATAGGCTTAGGTCACAGTTTCAAGATGACTCAACCAGTTTTTCTTCTGCAGAAAAAGAACTTTTTTATTCGAGATTTGAAAAACAATAAACGATGACTAAAACAAATAATCTACTCACCTGAAGCTTTATCTCCACAAACTTTACATGGTTCCCATGACTGGTTGTCATTCGATAAATTTACAGCTGTTTGATTCATATTCAAACCAGTGTTAGGTGATGTACCAACAGGAGTACAGCCATTTAAAAGT]

[+] EMBL CD097684             [TACTACTTTGCAAATAATATTACAGCGTAACATTAAATATTCGCTTCTCGATAACAACACTTAATGATTTATTCAAACATCTTGAAACGGTCAACCATGGGTTGGAGAAAATTGTGCAACTTCTAACTTTAAGGGAAGTTTCATGAAACAACAAACAGTTGTCACTTATTAGTTTCCAAATCCAAGGCTTAATACTGACTGAATATCAAGTCCCCAGTGTGTGCTGACTAAGAAATGTCATAATGCCATTCAACATATAAATGATCTCCCACCATGTAGACCGACATGATAACACAAATACAATACCTTGAGATTCTCGGAAAATCTATAGGCTTAGGTCACAGTTTCAAGATGACTCAACCAGTTTTTCTTCTGCAGAAAAAGAACTTTTTTATTCGAGATTTGAAAAACAATAAACGATGACTAAAACAAATAATCTACTCACCTGAAGCTTTATCTCCACAAACTTTACATGGTTCCCATGACTGGTTGTCATTCGATAAATTTACAGCTGTTTGATTCATATTCAAACCAGTGTTAGGTGATGTACCAACAGGAGTACAGCCATTTAAAAGT]
[+] EMBL CD097669             [TACTACTTTGCAAATAATATTACAGCGTAACATTAAATATTCGCTTCCCGATAACAACACTTAATGATTTATTCAAACATCTTGAAACGGTCAACCATGGGTTGGAGAAAATTGTGCAACTTCTAACTTTAAGGGAAGTTTCATGAAACAACAAACAGTTGTCACTTATTAGTTTCCAAATCCAAGGCTTAATACTGACTGAATATCAAGTCCCCAGTGTGTGCTGAATAAGAAATGTCATAATGCCATTCAACATATAAATGATCTCCCACCATGTAGACCGACATGATAACACAAATACAATACCTTGAGATTCTCGGAAAATCTATAGGCTTAGGTCACAGTTTCAAGATGACTCAACCAGTTTTTCTTCTGCAGAAAAAGAACTTTTTTATTCGAGATTTGAAAAACAATAAACGATGACTAAAACAAATAATCTACTCACCTGAAGCTTTATCTCCACAAACTTTACATGGTTCCCATGACTGGTTGTCATTCGATAAATTTACAGCTGTTTGATTCATATTCAAACCAGTGTTAGGTGATGTACCAACAGGAGTACAGCCATTT      ]
[+] EMBL CD097656             [TACTACTTTGCAAATAATATTACAGCGTAACATTAAATATTCGCTTCTCGATAACGACACTTAATGATTTATTCAAACATCTTGAAACGGTCAACCATGGGTTGGAGAAAATTGTGCAACTTCTAACTTTAAGGGAAGTTTCATGAAACAACAAACAGTTGTCACTTATTAGTTTCCAAATCCAAGGCTTAATACTGACTGAATATCAAGTCCCCAGTGTGTGCTGAATAAGAAATGTCATAATGCCATTCAACATATAAATGATCTCCCACCATGTAGACCGACATGATAACACAAATACAATACCTTGAGATTCTCGGAAAATCTATAGGCTTAGGTCACAGTTTCAAGATGACTCAACCAGTTTCTCTTCTGCAGAAAAAGAACTTTTTTATTCGAGATTTGATAAACAATAAACGATGACTAAAACAAATAATCTACTCACCTGAAGCTTTATCTTCACAAACTTTACATGGTTCCCATGAC                                                                                          ]
[+] EMBL CD097722             [TACTACTTTGCAAATAATATTACAGCGTAACATTAAATATTCGCTTCTCGATAACAACACTTAATGATTTATTCAAACATCTTGAAACGGTCAACCATGGGTTGGAGAAAATTGTGCAACTTCTAACTTTAAGGGAAGTTTCATGAAACAACAAACAGTTGTCACTTATTAGTTTCCAAATCCAAGGCTTAATACTGACTGAATATCAAGTCCCCAGTGTGTGCTGAATAAGAAATGTCATAATGCCATTCAACATATAAATGATCTCCCACCATGTAGACCGACATGATAACACAAATACAATACCTTGAGATTCTCGGAAAATCTATAGGCTTAGGTCACAGTTTCAAGATGACTCAACCAGTTTTTCTTCTGCAGAAAAAGAACTTTTTTATTCGAGATTTGAAAAACAATAAACGATGAC                                                                                                                                                        ]




>consensus_8557#0
TACTACTTTGCAAATAATATTACAGCGTAACATTAAATATTCGCTTCTCGATAACAACAC
TTAATGATTTATTCAAACATCTTGAAACGGTCAACCATGGGTTGGAGAAAATTGTGCAAC
TTCTAACTTTAAGGGAAGTTTCATGAAACAACAAACAGTTGTCACTTATTAGTTTCCAAA
TCCAAGGCTTAATACTGACTGAATATCAAGTCCCCAGTGTGTGCTGAATAAGAAATGTCA
TAATGCCATTCAACATATAAATGATCTCCCACCATGTAGACCGACATGATAACACAAATA
CAATACCTTGAGATTCTCGGAAAATCTATAGGCTTAGGTCACAGTTTCAAGATGACTCAA
CCAGTTTTTCTTCTGCAGAAAAAGAACTTTTTTATTCGAGATTTGAAAAACAATAAACGA
TGACTAAAACAAATAATCTACTCACCTGAAGCTTTATCTCCACAAACTTTACATGGTTCC
CATGACTGGTTGTCATTCGATAAATTTACAGCTGTTTGATTCATATTCAAACCAGTGTTA
GGTGATGTACCAACAGGAGTACAGCCATTTAAAAGT

consensusID : consensus_8557#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 503
fasta sequence

                              [CTAACACTGGTTTGAATATGAATCAAACAGCTGTAAATTTATCGAATGACAACCAGTCATGGGAACCATGTAAAGTTTGTGGAGATAAAGCTTCAGGACGACATTACGGTGTTGTATCATGTGAAGGATGTAAAGGATTTTTCAAACGTTCTATTCGAGGACACGTTAGCTACGTATGTCGCAGTGAACAAAATTGTCTTGTAAATAAAGCCTATCGTAATCGTTGCCAATATTGTCGACTACAAAAATGTCTAGCTGTTGGCATGCGTTCAGAAGCTGTGCAAAATGAACGTAGACCTACAAATACATTTGCTTTGAATTTTCTAAACGATAATTCAGGTAATTCAAATTGTACAACTACTGGTGGCAGTAGTAATATGAATAATGGCGGTTCACCTAGTCCTAGTAATAACTGCTGTGTATCTACTGCTTCTATTACTTCTACGACGACGACAACAACAACAGCAACCGTAACAACACCCACTACTACTTCTGCTAATAAT]

[+] EMBL CD153024             [CTAACACTGGTTTGAATATGAATCAAACAGCTGTAAATTTATCGAATGACAACCAGTCATGGGAACCATGTAAAGTTTGTGGAGATAAAGCTTCAGGACGACATTACGGTGTTGTATCATGTGAAGGATGTAAAGGATTTTTCAAACGTTCTATTCGAGGACACGTTAGCTACGTATGTCGCAGTGAACAAAATTGTCTTGTAAATAAAGCCTATCGTAATCGTTGCCAATATTGTCGACTACAAAAATGTCTAGCTGTTGGCATGCGTTCAGAAGCTGTGCAAAATGAACGTAGACCTACAAATACATTTGCTTTGAATTTTCTAAACGATAATTCAGGTAATTCAAATTGTACAACTACTGGTGGCAGTAGTAATATGAATAATGGCGGTTCACCTAGTCCTAGTAATAACTGCTGTGTATCTACTGCTTCTATTACTTCTACGACGACGACAACAACAACAGCAACCGTAACAACACCCACTACTACTTCTGCTAATAAT]
[+] EMBL CD168281             [                                                                                                           GGTGTTGTATCATGTGAAGGATGTAAAGGATTTTTCAAACGTTCTATTCGAGGACACGTTAGCTACGTATGTCGCAGTGAACAAAATTGTCTTGTAAATAAAGCCTATCGTAATCGTTGCCAATATTGTCGACTACAAAAATGTCTAGCTGTTGGCATGCGTTCAGAAGCTGTGCAAA                                                                                                                                                                                                                          ]




>consensus_8557#1
CTAACACTGGTTTGAATATGAATCAAACAGCTGTAAATTTATCGAATGACAACCAGTCAT
GGGAACCATGTAAAGTTTGTGGAGATAAAGCTTCAGGACGACATTACGGTGTTGTATCAT
GTGAAGGATGTAAAGGATTTTTCAAACGTTCTATTCGAGGACACGTTAGCTACGTATGTC
GCAGTGAACAAAATTGTCTTGTAAATAAAGCCTATCGTAATCGTTGCCAATATTGTCGAC
TACAAAAATGTCTAGCTGTTGGCATGCGTTCAGAAGCTGTGCAAAATGAACGTAGACCTA
CAAATACATTTGCTTTGAATTTTCTAAACGATAATTCAGGTAATTCAAATTGTACAACTA
CTGGTGGCAGTAGTAATATGAATAATGGCGGTTCACCTAGTCCTAGTAATAACTGCTGTG
TATCTACTGCTTCTATTACTTCTACGACGACGACAACAACAACAGCAACCGTAACAACAC
CCACTACTACTTCTGCTAATAAT

consensusID : consensus_8557#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence

                              [GAAAATTCAAAGCAAATGTATTTGTAGGTCTACGTTCATTTTGCACAGCTTCTGAACGCATGCCAACAGCTAGACATTTTTGTAGTCGACAATATTGGCAACGATTACGATAGGCTTTATTTACAAGACAATTTTGTTCACTGCGACATACGTAGCCAACGTGTCCTCGAATAGAACGTTTGAAAAATCCTTTACATCCTTCACATGATACAACACCGTAATGTCGTCCTATAGAGAAAACGAAATAAATAAAAAACATACATCAGTCACCTGAAAACCAAATAAACGAAGAATACTTTAGTCTCGCGTTATATCATCTCTTGGAACATTAGTAAAAACACGACAACAAAGAAGTCCACTTACTAAGACACCATCAAGTATTGTTGAGATTCTAAGTTGTCATGTATAAATCATGATCCTTCACGATTACAGGTATACCTTGCTGACGAGTGACGACTAGC]

[+] EMBL CD124909             [GAAAATTCAAAGCAAATGTATTTGTAGGTCTACGTTCATTTTGCACAGCTTCTGAACGCATGCCAACAGCTAGACATTTTTGTAGTCGACAATATTGGCAACGATTACGATAGGCTTTATTTACAAGACAATTTTGTTCACTGCGACATACGTAGCCAACGTGTCCTCGAATAGAACGTTTGAAAAATCCTTTACATCCTTCACATGATACAACACCGTAATGTCGTCCTATAGAGAAAACGAAATAAATAAAAAACATACATCAGTCACCTGAAAACCAAATAAACGAAGAATACTTTAGTCTCGCGTTATATCATCTCTTGGAACATTAGTAAAAACACGACAACAAAGAAGTCCACTTACTAAGACACCATCAAGTATTGTTGAGATTCTAAGTTGTCATGTATAAATCATGATCCTTCACGATTACAGGTATACCTTGCTGACGAGTGACGACTAGC]




>consensus_8557#2
GAAAATTCAAAGCAAATGTATTTGTAGGTCTACGTTCATTTTGCACAGCTTCTGAACGCA
TGCCAACAGCTAGACATTTTTGTAGTCGACAATATTGGCAACGATTACGATAGGCTTTAT
TTACAAGACAATTTTGTTCACTGCGACATACGTAGCCAACGTGTCCTCGAATAGAACGTT
TGAAAAATCCTTTACATCCTTCACATGATACAACACCGTAATGTCGTCCTATAGAGAAAA
CGAAATAAATAAAAAACATACATCAGTCACCTGAAAACCAAATAAACGAAGAATACTTTA
GTCTCGCGTTATATCATCTCTTGGAACATTAGTAAAAACACGACAACAAAGAAGTCCACT
TACTAAGACACCATCAAGTATTGTTGAGATTCTAAGTTGTCATGTATAAATCATGATCCT
TCACGATTACAGGTATACCTTGCTGACGAGTGACGACTAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8557#0      ----TACTACTTTGCAAATAATATTA-CAGCGTAACATTAAATATTCGCTTCTCGATAAC 55
consensus_8557#2      --GAAAATTCAAAGCAAATGTATTTG-TAGGTCTACGTTCATTTTGCACAGCTTCTGAAC 57
consensus_8557#1      CTAACACTGGTTTGAATATGAATCAAACAGCTGTAAATTTATCGAATGACAACCAGTCAT 60
                           * *     * * **         **    *  ** *                 * 

consensus_8557#0      AACACTTA---ATGATTTATTCAAACATCTTGAAACGGTCAACCATGGGTTGGAGAAAAT 112
consensus_8557#2      GCATGCCA---ACAGCT-----AGACATTTTTGTA--GTCGACAATA--TTGGCAACGAT 105
consensus_8557#1      GGGAACCATGTAAAGTTTGTGGAGATAAAGCTTCA-GGACGACATTACGGTGTTGTATCA 119
                             *   *    *     * * *       *  * * **  *    **        

consensus_8557#0      TGTGCAACTTCTAAC---TTTAAGGGAAGTTTCATGAAACAACAAACAGTTGTCACTTAT 169
consensus_8557#2      TACGATAGGCTTTAT---TTACAAGACAATTTTGTTCACTGC--GACATACGTAGCCAAC 160
consensus_8557#1      TGTGAAGGATGTAAAGGATTTTTCAAACGTTCTATTCGAGGAC--ACGTTAGCTACGTAT 177
                      *  *       * *    **         **   *          **    *   *  * 

consensus_8557#0      TAGTTTCCAAATCCAAG-GCTTAATACTGACTGAATATCAAGTCCCCAGTGTGTGCTGAA 228
consensus_8557#2      GTGTCCTCGAATAGAAC-GTTTGAAAAATCCT-----TTACATCCTTCACATG------- 207
consensus_8557#1      GTCGCAGTGAACAAAATTGTCTTGTAAATAAAGCCTATCGTAATCGTTGCCAATAT---- 233
                               **   **  *  *   *           *      *               

consensus_8557#0      TAAGAAATGTCATAATGCCATTCAACATATAAATGATCTCCCACCATGTAGACCGACATG 288
consensus_8557#2      -ATACAACACCGTAATGTCGTCCTATAGAGAAA---------ACGAAATAAATAAAAAAC 257
consensus_8557#1      TGTCGACTACAAAAATGTCTAGCTGTTGGCATGCGTTCAGAAGCTGTGCAAAATGAACGT 293
                           *       **** *   *       *            *     * *   *    

consensus_8557#0      ATAACA-CAAATACAATACCTTGAGATTCTCGGAA-AAT-CTATAGGCTTAGGTCACAGT 345
consensus_8557#2      ATACAT-CAGTCACCTGAAAACCAAATAAACGAAG-AATACTTTAGTCTCGCGTTATATC 315
consensus_8557#1      AGACCTACAAATACATTTGCTTTGAATTTTCTAAACGATAATTCAGG--TAATTCAAATT 351
                      * *    **   **           **   *  *   **  *  **       * * *  

consensus_8557#0      TTCAAGATGACTCAACCAGTTTTTCTTCTGCAGAAAAAGAACTTTTTTATTCGAGATTTG 405
consensus_8557#2      ATCTCTTGGAAC--ATTAGTAAAAACACGACAACAAAGAAGTCCACTTACT-AAGACACC 372
consensus_8557#1      GTACAACTACTGGTGGCAGTAGTAATATGA-ATAATGGCGGTTCACCTAGTCCTAGTAAT 410
                       *               ***           *  *            ** *         

consensus_8557#0      AAAAACAAT-AAACGATGACTAAAACAAATAATCTACTCACC-TGA-AGCTTTATCTCCA 462
consensus_8557#2      ATCAAGTAT-TGTTGA-GATTCTAAGTTGTCATGTATAAATCATGA-TCCTTCACGATTA 429
consensus_8557#1      AACTGCTGTGTATCTACTGCTTCTATTACTTCTACGACGACGACAACAACAACAGCAACC 470
                      *       *      *    *   *    *  *      *     *   *   *      

consensus_8557#0      CAAACTTTACATGGTTCCCATGACTGGTTGTCATTCGATAAATTTACAGCTGTTTGATTC 522
consensus_8557#2      CAGG---TATACCTTGCTGACGAGTGACGACTAGC------------------------- 461
consensus_8557#1      GTAACAACACCCACTACT-ACTTCTGCTAATAAT-------------------------- 503
                              *     * *  *    **      *                           

consensus_8557#0      ATATTCAAACCAGTGTTAGGTGATGTACCAACAGGAGTACAGCCATTTAAAAGT 576
consensus_8557#2      ------------------------------------------------------
consensus_8557#1      ------------------------------------------------------