These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8568#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 884 fasta sequence [GTTATCCAACGGGCATCATAATATATGTGACCGATCAGAAAATCTGGCTCAAGCTAAATACCGGTTTCAGTTTTGGAGGGAGATTATCGAATATCTATTTGATAGCTCCAATAATTCGTCACCACACCACACTCCTCTTGGACGAGAGCTCAAAGAATCAGTTTCAGGTTTAGTATTATCAAAACAACGATTCTATCAGCTAATCAATTCAAGGGAGCTACACTTTAATAATGTTTTTTTTCCTACTTGCAAAGCAGCTGAAGCGTATTTTGATGATGCCTATGTTCCGATTCATTCTCTACTATCTGAGGCTTATGCATAACTTAACCCAAGAACATGTACTTCGTTTTCTACGTAATGATCCTTCGATGACTAGTACAGTTGATAAACCTATAAAAAAATTAACGTGTGATATTGCTTCTTTGGGTCATTATCATGCTAAACGTGTTTCCCATCTGAGTTCGGAATTAATGATGCAATCACTCTCAACACCAACGTTCAATTCAGCAAAGTTGAAAAAAAAAGATTTGCAACAAAAGCATTTAATACAAAATGTTTTGCCCAAGCTTTTACTACCTCTACTCCCTATAAATAAATATTTGGATTNTTTAGGTTACTCGGCGGATTTCGATTTACGTCTTAATTTCAACACAANTATGATTTATTACCGCTANCATTATGTTGGAATGCTNTGTGGAATANATACCAAGGAACCGAAGCCTANTCTCACTCTATTATNNTCCGTATCTAGTCATGTAATGTGAACAGATGTTAGCCTATGCATAGATGACTGATCGGAATATGNAAAAAGTCAGCTGGTGATNTCCTANATTCCANTACATTGTAGAAAGATGTACTAGCTGGACTATTTGCTACTCTACCTC] [+] EMBL CD081944 [GTTATCCAACGGGCATCATAATATATGTGACCGATCAGAAAATCTGGCTCAAGCTAAATACCGGTTTCAGTTTTGGAGGGAGATTATCGAATATCTATTTGATAGCTCCAATAATTCGTCACCACACCACACTCCTCTTGGACGAGAGCTCAAAGAATCAGTTTCAGGTTTAGTATTATCAAAACAACGATTCTATCAGCTAATCAATTCAAGGGAGCTACACTTTAATAATGTTTTTTTTCCTACTTGCAAAGCAGCTGAAGCGTATTTTGATGATGCCTATGTTCCGATTCATTCTCTACTATCTGAGGCTTATGCATAACTTAACCCAAGAACATGTACTTCGTTTTCTACGTAATGATCCTTCGATGACTAGTACAGTTGATAAACCTATAAAAAAATTAACGTGTGATATTGCTTCTTTGGGTCATTATCATGCTAAACGTGTTTCCCATCTGAGTTCGGAATTAATGATGCAATCACTCTCAACACCAACGTTCAATTCAGCAAAGTTGAAAAAAAAAGATTTGCAACAAAAGCATTTAATACAAAATGTTTTGCCCAAGCTTTTACTACCTCTACTCCCTATAAATAAATATTTGGATTNTTTAGGTTACTCGGCGGATTTCGATTTACGTCTTAATTTCAACACAANTATGATTTATTACCGCTANCATTATGTTGGAATGCTNTGTGGAATANATACCAAGGAACCGAAGCCTANTCTCACTCTATTATNNTCCGTATCTAGTCATGTAATGTGAACAGATGTTAGCCTATGCATAGATGACTGATCGGAATATGNAAAAAGTCAGCTGGTGATNTCCTANATTCCANTACATTGTAGAAAGATGTACTAGCTGGACTATTTGCTACTCTACCTC] consensusID : consensus_8568#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 538 fasta sequence [TATTTCTGCTGTCATATGGAATGTACTTAAAACATCTTTTGATTCGTTTTATGAATGCAAAAACAAAACCTTATTGTCTCAGTATTGTTCATATGATCACGAAAACTATCTGTGTTCACTGTTGCTACCTGGTTCAAGACGTAACTTTGCTTTGGCCTTAAGAGCTTTCAACGTAGAACTAGCTCAAATATGTGACCGATCAGAAAATCTGGCTCAAGCTAAATACCGGTTTCAGTTTTGGAGGGAGATTATCGAATATCTATTTGATAGCTCCAATAATTCGTCACCACACCACACTCCTCTTGGACGAGAGCTCAAAGAATCAGTTTCAGGTTTAGTATTATCAAAACAACGATTCTATCAGCTAATCAATTCAAGGGAGCTACACTTTAATAATGTTTTTTTTCCTACTTGCAAAGCAGCTGAAGCGTATTTTGATGATGCCTATGTTCCGATTCATTCTCTACTATCTGAGGCTTATGCATAACTTAACCCAAGAACATGTACTTCGTTTTCTACGTAATGATCCTTCGATGAC] [+] EMBL CD139196 [TATTTCTGCTGTCATATGGAATGTACTTAAAACATCTTTTGATTCGTTTTATGAATGCAAAAACAAAACCTTATTGTCTCAGTATTGTTCATATGATCACGAAAACTATCTGTGTTCACTGTTGCTACCTGGTTCAAGACGTAACTTTGCTTTGGCCTTAAGAGCTTTCAACGTAGAACTAGCTCAAATATGTGACCGATCAGAAAATCTGGCTCAAGCTAAATACCGGTTTCAGTTTTGGAGGGAGATTATCGAATATCTATTTGATAGCTCCAAT ] [-] EMBL CD187318 [ ATTACGAAAACTATCTGTGTTCACTGTTGCTACCTGGTTCAAGACGTAACTTTGCTTTGGCCTTAAGAGCTTTCAACGTAGAACTAGCTCAAATATGTGACCGATCAGAAAATCTGGCTCAAGCTAAATACCGGTTTCAGTTTTGGAGGGAGATTATCGAATATCTATTTGATAGCTCCAATAATTCGTCACCACACCACACTCCTCTTGGACGAGAGCTCAAAGAATCAGTTTCAGGTTTAGTATTATCAAAACAACGATTCTATCAGCTAATCAATTCAAGGGAGCTACACTTTAATAATGTTTTTTTTCCTACTTGCAAAGCAGCTGAAGCGTATTTTGATGATGCCTATGTTCCGATTCATTCTCTACTATCTGAGGCTTATGCATAACTTAACCCAAGAACATGTACTTCGTTTTCTACGTAATGATCCTTCGATGAC] consensusID : consensus_8568#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [TTTCAACACCAACGTTCAATTCAGCAAAGTTGAAAAAAAAAGATTTGCTACAAAAGCATTTAATACAAAATGTTTTGCCCAAGCTTTTACTACCTTTACTCCCTATAAATAAATATTTGGATTTTTTAGGTTACTCGGCGGATTTCGATTTACGTTTTAATTTCAAACCCAATAATGATTTATTTCCGCTACAATTATGTTGGAATGCTTTGTGGAATAAAATACCAAAGGAACCGAAAGCCTAATTTTCACTTTTAATTTATTTTTCCACGTATTTCAGTACATGTAAATGTGAACAAGAATGTTTAGCCTTATGGCATTAGATAGACTGAGTCGGGAATATTGTAAAAAGTTTTAGCTTGTTGTATTTTTCCCTAGTATTTCCCAGTTTACATTTGGTAAGAAAAAGG] [-] EMBL CD077214 [TTTCAACACCAACGTTCAATTCAGCAAAGTTGAAAAAAAAAGATTTGCTACAAAAGCATTTAATACAAAATGTTTTGCCCAAGCTTTTACTACCTTTACTCCCTATAAATAAATATTTGGATTTTTTAGGTTACTCGGCGGATTTCGATTTACGTTTTAATTTCAAACCCAATAATGATTTATTTCCGCTACAATTATGTTGGAATGCTTTGTGGAATAAAATACCAAAGGAACCGAAAGCCTAATTTTCACTTTTAATTTATTTTTCCACGTATTTCAGTACATGTAAATGTGAACAAGAATGTTTAGCCTTATGGCATTAGATAGACTGAGTCGGGAATATTGTAAAAAGTTTTAGCTTGTTGTATTTTTCCCTAGTATTTCCCAGTTTACATTTGGTAAGAAAAAGG] consensusID : consensus_8568#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [TCAATATCTGTGTTTACGATTATGCACATTTTATATTTATTTGACTAAGTACATCNANTTTACCTTCTAACAAGTAGGATTTGAAATGACTTCATTAAACCCATTGCTTAATCACTTTGGACGAGCTCAGGGAATGGCGAATATGTTACGTAGTTCAGTTTTATTAGCTCAACATAAAAATGTTCTACTATTTCCTTTGGATGTAGTAAATCAACATAACTTAACCCAAGAACATGTACTTCGTTTTCTACGTAATGATCCTTCGATGACTAGTACAGTTGATAAACCTATAAAAAAATTAACGTGTGATATTGCTTCTTTGGGTCATTATCATGCTAAACGTGTTTCCCATCTGAGTTCGGAATTAATGATGCAATCACTCTCAACACCA] [-] EMBL CD181223 [TCAATATCTGTGTTTACGATTATGCACATTTTATATTTATTTGACTAAGTACATCNANTTTACCTTCTAACAAGTAGGATTTGAAATGACTTCATTAAACCCATTGCTTAATCACTTTGGACGAGCTCAGGGAATGGCGAATATGTTACGTAGTTCAGTTTTATTAGCTCAACATAAAAATGTTCTACTATTTCCTTTGGATGTAGTAAATCAACATAACTTAACCCAAGAACATGTACTTCGTTTTCTACGTAATGATCCTTCGATGACTAGTACAGTTGATAAACCTATAAAAAAATTAACGTGTGATATTGCTTCTTTGGGTCATTATCATGCTAAACGTGTTTCCCATCTGAGTTCGGAATTAATGATGCAATCACTCTCAACACCA] consensusID : consensus_8568#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence [GTTTGAGCTCAATAGCTTTTGACGAGAATTTCTATTGAATTTCTATTGAGTTGTTATCTGTAGACCTGGCATTGTGTTCTGATAGTATTTCTGTTGTCATATGGAATGTACTTAAAACATCTTTTATATGTGACCGATTCAGAAAATCTGGCTCAAGCTAAATACCGGTTTCAGTTTTGGAGGGAGATATCGATATCTATTGGTAGCTCCATTATTCGTCACACACACACTCTTTTGGACGGAAGCTAAGAATCGTTTCAGGTTTAGGTTTTCAAACAACGTTTCTTCGCTAATCATTTCAGGGGTGCACTTTAATAGTTTTTTTCCCTCTGCAAACTGTGA] [+] EMBL AW061397 [GTTTGAGCTCAATAGCTTTTGACGAGAATTTCTATTGAATTTCTATTGAGTTGTTATCTGTAGACCTGGCATTGTGTTCTGATAGTATTTCTGTTGTCATATGGAATGTACTTAAAACATCTTTTATATGTGACCGATTCAGAAAATCTGGCTCAAGCTAAATACCGGTTTCAGTTTTGGAGGGAGATATCGATATCTATTGGTAGCTCCATTATTCGTCACACACACACTCTTTTGGACGGAAGCTAAGAATCGTTTCAGGTTTAGGTTTTCAAACAACGTTTCTTCGCTAATCATTTCAGGGGTGCACTTTAATAGTTTTTTTCCCTCTGCAAACTGTGA] consensusID : consensus_8568#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [TAGATTATCGAATATCTATTTGATAGCTACAATAATTCGTCACCACACCACACTCCTCTTGGACGAGAGCTCAAAGAATCAGTTTCAGGTTTAGTATTATCAAAACAACGATTCTATCAGCTAATCAATTCAAGGGAGCTACACTTTAATAATGTTTTTTTTCCTACTTGCAAAGCAGCTGAAGCGTATTTTGATGATGCCTATGTTCCGATTCATTCTCTACTATCTGAGGCTTATGGTTCTAAATTCGACTGAACCTTTGGATCTTGCTTAAAGAACAGTGTTCTTGC] [+] EMBL BG932618 [TAGATTATCGAATATCTATTTGATAGCTACAATAATTCGTCACCACACCACACTCCTCTTGGACGAGAGCTCAAAGAATCAGTTTCAGGTTTAGTATTATCAAAACAACGATTCTATCAGCTAATCAATTCAAGGGAGCTACACTTTAATAATGTTTTTTTTCCTACTTGCAAAGCAGCTGAAGCGTATTTTGATGATGCCTATGTTCCGATTCATTCTCTACTATCTGAGGCTTATGGTTCTAAATTCGACTGAACCTTTGGATCTTGCTTAAAGAACAGTGTTCTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8568#1 TATTTCTGCTGTCATATGGAATGTACTTAAAACATCTTTTGATTCGTTTTATGAATGCAA 60 consensus_8568#5 ------------------------------------------------------------ consensus_8568#4 --------------------------------------------------------GTTT 4 consensus_8568#3 ------------------------------------------------------------ consensus_8568#0 ------------------------------------------------------------ consensus_8568#2 ------------------------------------------------------------ consensus_8568#1 AAACAAAACCTTATTGTCTCAGTATTGTTCATATGATCACGAAAACTATCTGTGTTCACT 120 consensus_8568#5 ------------------------------------------------------------ consensus_8568#4 GAGCTCAATAGCTTTTGACGAGAATTTCTATTGAATTTCTATTGAGTTGTTATCTGTAGA 64 consensus_8568#3 ----TCAATATCTGTGTTTACGA--TTATGCACATTTTATATTTATTTGAC-TAAGTACA 53 consensus_8568#0 ------------------------------------------------------------ consensus_8568#2 --TTTCAACACCAACGTTCAATTCAGCAAAGTTGAAAAAAAAAGATTTGCTACAAAAGCA 58 consensus_8568#1 GTTGCTACCTGGTTCAAGACGTAACTTTGCTTTGGCCTTAAGAGCTTTCAACGTAGAACT 180 consensus_8568#5 ------------------------------------------------------------ consensus_8568#4 CCTGGCATTGTGTTCTGATAGTATTTCTGTTGTCATATGGAATGTACTTA------AAAC 118 consensus_8568#3 TCNANTTTACCTTCTAACAAGTAGGATTTGAAATGACTTCATTAAACCCATTGCTTAATC 113 consensus_8568#0 ----------------------------------------------GTTATCCAACGGGC 14 consensus_8568#2 TTTAATACAAAATGTTTTGCCCAAGCTTT-TACTACCTTTACTCCCTATAA---ATAAAT 114 consensus_8568#1 AGCTCAA-ATATGTGACCGAT-CAGAAAATCTGGCTCAAGCTAAATACCGGTTTCAGTTT 238 consensus_8568#5 ------------------------------------------------------------ consensus_8568#4 ATCTTTT-ATATGTGACCGATTCAGAAAATCTGGCTCAAGCTAAATACCGGTTTCAGTTT 177 consensus_8568#3 ACTTTGG-ACGAGCTCAGGGAATGGCGAATATG--TTACGTAGTTCAGTTTTATTAGCTC 170 consensus_8568#0 ATCATAATATATGTGACCGAT-CAGAAAATCTGGCTCAAGCTAAATACCGGTTTCAGTTT 73 consensus_8568#2 ATTTGGA-TTTTTTAGGTTACTCGGCGGATTT----CGATTTACGTTTTAATTTCAAACC 169 consensus_8568#1 TGGAGGGAGATTATCGAATATCTATTTGATAGCTCCAATAATTCGTCACCACACCACACT 298 consensus_8568#5 ------TAGATTATCGAATATCTATTTGATAGCTACAATAATTCGTCACCACACCACACT 54 consensus_8568#4 TGGAGGGAGAT-ATCGA-TATCTATT-GGTAGCTCCATTA-TTCGTCAC-ACAC-ACACT 231 consensus_8568#3 AACATAAAAATGTTCTACTATTTCCT--TTGGATGTAGTAAATCAACATAACTTAAC--- 225 consensus_8568#0 TGGAGGGAGATTATCGAATATCTATTTGATAGCTCCAATAATTCGTCACCACACCACACT 133 consensus_8568#2 CA----ATAATGATTTA-TTTCCGCTACAATTATGTTGGAATGCTTTGTGGAATAAAATA 224 ** * * * * * * * * * consensus_8568#1 CCTCTTGGACGAGAGCTCAAAGAATCAGTTTCAGGTTTAGTATTATCAAAACAACGATTC 358 consensus_8568#5 CCTCTTGGACGAGAGCTCAAAGAATCAGTTTCAGGTTTAGTATTATCAAAACAACGATTC 114 consensus_8568#4 C-TTTTGGACGGAAGCT--AAGAATC-GTTTCAGGTTTAG-GTTTTCAAA-CAACGTTTC 285 consensus_8568#3 --CCAAGAACATGTACT-------TCGTTTTCTACGTAATGATCCTTCGATGACTAGTAC 276 consensus_8568#0 CCTCTTGGACGAGAGCTCAAAGAATCAGTTTCAGGTTTAGTATTATCAAAACAACGATTC 193 consensus_8568#2 CCAAAGGAACCGAAAGCCTAATTTTCACTTTTAATTT----ATTTTTCCACGTATTTCAG 280 * ** ** *** * * * * consensus_8568#1 TATCAGCTAATCAATTCAAGGGAGCTACACTTTAATAATGTTTTTTTTCCTAC-TTGCAA 417 consensus_8568#5 TATCAGCTAATCAATTCAAGGGAGCTACACTTTAATAATGTTTTTTTTCCTAC-TTGCAA 173 consensus_8568#4 --TTCGCTAATCATTTCAGGGG---TGCACTTTAATA--GTTTTTTTCCCT---CTGCAA 335 consensus_8568#3 AGTTGATAAACCTATAAAAAAA--TTAACGTGTGATATTGCTTCTTTGGGTCA-TTATCA 333 consensus_8568#0 TATCAGCTAATCAATTCAAGGGAGCTACACTTTAATAATGTTTTTTTTCCTAC-TTGCAA 252 consensus_8568#2 TACATGTAAATGTGAACAAGAATGTTTAGCCTT-ATGGCATTAGATAGACTGAGTCGGGA 339 ** * * * ** * * * * consensus_8568#1 AGCAGCTGAAGCGTATTTTGATGATGCCTATGTTCCGATTCATTCTCTACTATCTGAGGC 477 consensus_8568#5 AGCAGCTGAAGCGTATTTTGATGATGCCTATGTTCCGATTCATTCTCTACTATCTGAGGC 233 consensus_8568#4 ACTG--TGA--------------------------------------------------- 342 consensus_8568#3 TGCTAAACGTGTTTCCCATCTGAGTTCGGAATTAATGATGCAATCACTCTCAACACCA-- 391 consensus_8568#0 AGCAGCTGAAGCGTATTTTGATGATGCCTATGTTCCGATTCATTCTCTACTATCTGAGGC 312 consensus_8568#2 ATATTGTAAAAAGTTTTAGCTTGTTGTATTTTTCCCTAGTATTTCCCAGTTTACATTTGG 399 consensus_8568#1 TTATG--CATAACTTAACCCAAGAACATGTACTTCGTTTTCTACGTAATGATCCTTCGAT 535 consensus_8568#5 TTATGGTTCTAAATTCGACTGAACCTTTGGATCTTGCTTAAAGAACAGTGTTCTTGC--- 290 consensus_8568#4 ------------------------------------------------------------ consensus_8568#3 ------------------------------------------------------------ consensus_8568#0 TTATG--CATAACTTAACCCAAGAACATGTACTTCGTTTTCTACGTAATGATCCTTCGAT 370 consensus_8568#2 TAAGAAAAAGG------------------------------------------------- 410 consensus_8568#1 GAC--------------------------------------------------------- 538 consensus_8568#5 ------------------------------------------------------------ consensus_8568#4 ------------------------------------------------------------ consensus_8568#3 ------------------------------------------------------------ consensus_8568#0 GACTAGTACAGTTGATAAACCTATAAAAAAATTAACGTGTGATATTGCTTCTTTGGGTCA 430 consensus_8568#2 ------------------------------------------------------------ consensus_8568#1 ------------------------------------------------------------ consensus_8568#5 ------------------------------------------------------------ consensus_8568#4 ------------------------------------------------------------ consensus_8568#3 ------------------------------------------------------------ consensus_8568#0 TTATCATGCTAAACGTGTTTCCCATCTGAGTTCGGAATTAATGATGCAATCACTCTCAAC 490 consensus_8568#2 ------------------------------------------------------------ consensus_8568#1 ------------------------------------------------------------ consensus_8568#5 ------------------------------------------------------------ consensus_8568#4 ------------------------------------------------------------ consensus_8568#3 ------------------------------------------------------------ consensus_8568#0 ACCAACGTTCAATTCAGCAAAGTTGAAAAAAAAAGATTTGCAACAAAAGCATTTAATACA 550 consensus_8568#2 ------------------------------------------------------------ consensus_8568#1 ------------------------------------------------------------ consensus_8568#5 ------------------------------------------------------------ consensus_8568#4 ------------------------------------------------------------ consensus_8568#3 ------------------------------------------------------------ consensus_8568#0 AAATGTTTTGCCCAAGCTTTTACTACCTCTACTCCCTATAAATAAATATTTGGATTNTTT 610 consensus_8568#2 ------------------------------------------------------------ consensus_8568#1 ------------------------------------------------------------ consensus_8568#5 ------------------------------------------------------------ consensus_8568#4 ------------------------------------------------------------ consensus_8568#3 ------------------------------------------------------------ consensus_8568#0 AGGTTACTCGGCGGATTTCGATTTACGTCTTAATTTCAACACAANTATGATTTATTACCG 670 consensus_8568#2 ------------------------------------------------------------ consensus_8568#1 ------------------------------------------------------------ consensus_8568#5 ------------------------------------------------------------ consensus_8568#4 ------------------------------------------------------------ consensus_8568#3 ------------------------------------------------------------ consensus_8568#0 CTANCATTATGTTGGAATGCTNTGTGGAATANATACCAAGGAACCGAAGCCTANTCTCAC 730 consensus_8568#2 ------------------------------------------------------------ consensus_8568#1 ------------------------------------------------------------ consensus_8568#5 ------------------------------------------------------------ consensus_8568#4 ------------------------------------------------------------ consensus_8568#3 ------------------------------------------------------------ consensus_8568#0 TCTATTATNNTCCGTATCTAGTCATGTAATGTGAACAGATGTTAGCCTATGCATAGATGA 790 consensus_8568#2 ------------------------------------------------------------ consensus_8568#1 ------------------------------------------------------------ consensus_8568#5 ------------------------------------------------------------ consensus_8568#4 ------------------------------------------------------------ consensus_8568#3 ------------------------------------------------------------ consensus_8568#0 CTGATCGGAATATGNAAAAAGTCAGCTGGTGATNTCCTANATTCCANTACATTGTAGAAA 850 consensus_8568#2 ------------------------------------------------------------ consensus_8568#1 ---------------------------------- consensus_8568#5 ---------------------------------- consensus_8568#4 ---------------------------------- consensus_8568#3 ---------------------------------- consensus_8568#0 GATGTACTAGCTGGACTATTTGCTACTCTACCTC 884 consensus_8568#2 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||