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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8571#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 800 fasta sequence
[CAAGCAGTCTTGATTACTGACTTTCGTGAACAGTTTTGTTTTACTGATAGTTCAAACCTGGATTATTCTGATAACGAATAAGCGGTAGATTTAAATGGGACACAGACTACAAGCAATGGCCAATTTTGTAAGAGAGAGGTTTTGATATGGTTAGGTAGATACAAGCAAGTCTAGGTGATCGATAAATAAATTTATTTCATTCCTTGTCTCGGAACGACAAACATCCTTTTCATCCTCAAAACACATTAATAGTTGTTGAAATGTCTTGTGACATAAAGCTTCATATATTTTCTGTTGGTGATGTACAAATGTATTTTTCGCAATGAGGCACATCATAGTATGCAACAATTAAGTTAGAAGTCTTATTACTTAACAATTTCTTTCCATAAAACTGTATATTGTTCAAGTACCATACTTATCACTCACCACGTAGTCACCAATCGGTCTACTTATAAAGTAGTTTACAGAATATTCATAAATCCCACCTATTTCCACTTGCTGTGGGCACTTGGTAAAATTAACTGAATCATATTGAATCGGACAGTTCGAGGACACTATCATGGAAATATTTGCGGTAATCTTTGGAGTCAACAATGCTTCCATTNTGATTGTTAAATTGGTACC-AATAGGCGGGATCGACACTCCAGAAAAAAGACCGACTTTGAATCGCATCATAATACTGAAATCATTTGAATCATTGGCAGGAGAGGATGAAACACATATCTGACTTGTCATTGTGAACTCCGAAGGCTACGGAAAACAATTAACAAGAATGGATTAAAGGCTAGAGTTCTCAGAAA]
[+] EMBL CD123466 [CAAGCAGTCTTGATTACTGACTTTCGTGAACAGTTTTGTTTTACTGATAGTTCAAACCTGGATTATTCTGATAACGAATAAGCGGTAGATTTAAATGGGACACAGACTACAAGCAATGGCCAATTTTGTAAGAGAGAGGTTTTGATATGGTTAGGTAGATACAAGCAAGTCTAGGTGATCGATAAATAAATTTATTTCATTCCTTGTCTCGGAACGACAAACATCCTTTTCATCCTCAAAACACATTAATAGTTGTTGAAATGTCTTGTGACATAAAGCTTCATATATTTTCTGTTGGTGATGTACAAATGTATTTTTCGCAATGAGGCACATCATAGTATGCAACAATTAAGTTAGAAGTCTTATTACTTAACAATTTCTTTCCATAAAACTGTATATTGTTCAAGTACCATACTTATCACTCACCACGTAGTCACCAATCGGTCTACTTATAAAGTAGTTTACAGAATATTCATAAATCCCACCTATTTCCACTTGCTGTGGGCACTTGGTAAAATTAACTGAATCATATTGAATCGGACAGTTCGAGGACACTATCATGGAAATATTTGCGGTAATCTTTGGAGTCAACAATGCTTCCATTNTGATTGTTAAATTGGTACC AATA GCGGGATCGACACT ]
[+] EMBL CD123475 [CAAGCAGTCTTGATTACTGACTTTCGTGAACAGTTTTGTTTTACTGATAGTTCAAACCTGGATTATTCTGATAACGAATAAGCGGTAGATTTAAATGGGACACAGACTACAAGCAATGGCCAATTTTGTAAGAGAGAGGTTTTGATATGGTTAGGTAGATACAAGCAAGTCTAGGTGATCGATAAATAAATTTATTTCATTCCTTGTCTCGGAACGACAAACATCCTTTTCATCCTCAAAACACATTAATAGTTGTTGAAATGTCTTGTGACATAAAGCTTCATATATTTTCTGTTGGTGATGTACAAATGTATTTTTCGCAATGAGGCACATCATAGTATGCAACAATTAAGTTAGAAGTCTTATTACTTAACAATTTCTTTCCATAAAACTGTATATTGTTCAAGTACCATACTTATCACTCACCACGTAGTCACCAATCGGTCTACTTATAAAGTAGTTTACAGAATATTCATAAATCCCACCTATTTCCACTTGCTGTGGGCACTTGGTAAAATTAACTGAATCATATTGAATCGGACAGTTCGAGGACACTATCATGGAAATATTTGCGGTAATCTTTGGAGTCAACAATGCTTCCATTNTGATTGTTAAATTGGTACCAAATAGGCGGGAT ]
[+] EMBL CD123470 [CAAGCAGTCTTGATTACTGACTTTCGTGAACAGTTTTGTTTTACTGATAGTTCAAACCTGGATTATTCTGATAACGAATAAGCGGTAGATTTAAATGGGACACAGACTACAAGCAATGGCCAATTTTGTAAGAGAGAGGTTTTGATATGGTTAGGTAGATACAAGCAAGTCTAGGTGATCGATAAATAAATTTATTTCATTCCTTGTCTCGGAACGACAAACATCCTTTTCATCCTCAAAACACATTAATAGTTGTTGAAATGTCTTGTGACATAAAGCTTCATATATTTTCTGTTGGTGATGTACAAATGTATTTTTCGCAATGAGGCACATCATAGTATGCAGCAATTAAGTTAGAAGTCTTATTACTTAACAATTTCTTTCCATAAAACTGTATATTGTTCAAGTACCATACTTATCACTCACCACGTAGTCACCAATCGGTCTACTTATAAAGTAGTTTACAGAATATTCATAAATCCCACCTATTTCCACTTGCTGTGGGCACTTGGTAAAATTAACTGAATCATATTGAATCGGACAGTTCGAGGACACTATCATGGAAATATTTGCGGTAAT ]
[-] EMBL CD123506 [ CTAGGTGATCGATAAATAAATNTATTTCA TCCCTGTCTCGGAACGACAAACATCCTTTTCATCCTCAAAACACATTAATAGTTGTTGAAATGTCTTGTGACATAAAGCTTCATATATTTTCTGTTGGTGATGTACAAATGTATTTTTCGCAATGAGGCACATCATAGTATGCAACAATTAAGTTAGAAGTCTTATTACTTAACAATTTCTTTCCATAAAACTGTATATTGTTCAAGTACCATACTTATCACTCACCACGTAGTCACCAATCGGTCCACTTATAAAGTAGTTTACAGAATATTCATAAATCCCACCTATTTCCACTTGCTGTGGGCACTTGGTAAAATTAACTGAATCATATTGAATCGGACAGTTCGAGGACACTATCATGGAAATATTTGCGGTAATCTTTGGAGTCAACAATGCTTCCATTTTGATTGTTAAATTGGTACC AATAGGCGGGATCGACACTCCAGAAAAAAGACCGACTTTGAATCGCATCATAATACTGAAATCATTTGAATCATTGGCAGGAGAGGATGAAACACATATCTGACTTGTCATTGTGAACTCCGAAGGCTACGGAAAACAATTAACAAGAATGGATTAAAGGCTAGAGTTCTCAGAAA]
[-] EMBL CD123527 [ CATATATTTTCTGTTGGTGATGTACAAATGTATTTTTCGCAATGAGGCACATCATAGTATGCAACAATTAAGTTAGAAGTCTTATTACTTAACAATTTCTTTCCATAAAACTGTATATTGTTCAAGTACCATACTTATCACTCACCACGTAGTCACCAATCGGTCTACTTATAAAGTAGTTTACAGAATATTCATAAATCCCACCTATTTCCACTTGCTGTGGGCACTTGGTAAAATTAACTGAATCATATTGAATCGGACAGTTCGAGGACACTATCATGGAAATATTTGCGGTAATCTTTGGAGTCAACAATGCTTCCATTTTGATTGTTAAATTGGTACC AATAGGCGGGATCGACACTCCAGAAAAAAGACCGACTTTGAATCGCATCATAATACTGAAATCATTTGAATCATTGGCAGGAGAGGATGAAACACATATCTGACTTGTCATTGTGAACTCCGAAGGCTACGGAAGACAATTAACAAGAATGGATTAAAGGCTAGAGTTCTCAGAAA]
consensusID : consensus_8571#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 536 fasta sequence
[ATGTACTTTATTTTAAAAAAAAGGCTTGTTGCAAGATAAGTAATTCAATAGAAAATTAACTAAATGTTCTATTATTGCACACAACATAAAATGAACACGTTATAAAAGCACAAATATTTGAACAAACTTTTGTATCCCAACTGTGAATGTAATGGATCAGTTAAAAGGGTTTGATGTTTGGACAGGTGTTAGTCCAGTTTGCCAATAGAAGTACATTCGCATACATTCCGTTGATGCACACTGGATTTTGTAGATTTGAAACGCTGACGTAGCCAATGGTAGTCAGTACGATGTTGCTACCAACCAATTGTTGAGTATCTATTTTGTAACCTTCTGGGTATGTAAAGAATGTTGTAGGTAGCGTTAAAGATATATGTCCAATCGAAGCACTATATTCATCAGTAGTGAATGTGAACACGTAGTCACCAATGGTCTACTTATAAAGTAGTTCACAGAATATTCATAAATCCCACCTATTTCCACTTGCTGTGGGCACTTGGTAAAATTAACTGAATCATATTGAATCGGACAGTTCG]
[+] EMBL CD073473 [ATGTACTTTATTTTAAAAAAAAGGCTTGTTGCAAGATAAGTAATTCAATAGAAAATTAACTAAATGTTCTATTATTGCACACAACATAAAATGAACACGTTATAAAAGCACAAATATTTGAACAAACTTTTGTATCCCAACTGTGAATGTAATGGATCAGTTAAAAGGGTTTGATGTTTGGACAGGTGTTAGTCCAGTTTGCCAATAGAAGTACATTCGCATACATTCCGTTGATGCACACTGGATTTTGTAGATTTGAAACGCTGACGTAGCCAATGGTAGTCAGTACGATGTTGCTACCAACCAATTGTTGAGTATCTATTTTGTAACCTTCTGGGTATGTAAAGAATGTTGTAGGTAGCGTTAAAGATATATGTCCAATCGAAGCACTATATTCATCAGTAGTGAATGTGAACACGTAGTCACCAATGGTCTACTTATAAAGTAGTTCACAGAATATTCATAAATCCCACCTATTTCCACTTGCTGTGGGCACTTGGTAAAATTAACTGAATCATATTGAATCGGACAGTTC ]
[-] EMBL CD079022 [ TGTACTNTATTNTAAAAAAAAGGCTTGTTGCAAGATAAGTAATTCAATAGAAAATTAACTAAATGTTCTATTATTGCACACAACATAAAATGAACACGTTATAAAAGCACAAATATTTGAACAAACTTTTGTATCCCAACTGTGAATGTAATGGATCAGTTAAAAGGGTTTGATGTTTGGACAGGTGTTAGTCCAGTTTGCCAATAGAAGTACATTCGCATACATTCCGTTGATGCACACTGGATTTTGTAGATTTGAAACGCTGACGTAGCCAATGGTAGTCAGTACGATGTTGCTACCAACCAATTGTTGAGTATCTATTTTGTAACCTTCTGGGTATGTAGAGAATGTTGTAGGTAGCGTTAAAGATATATGTCCAATCGAAGCACTATATTCATCAGTAGTGAATGTGAACACGTAGTCACCAATGGTCTACTTATAAAGTAGTTCACAGAATATTCATAAATCCCACCTATTTCCACTTGCTGTGGGCACTTGGTAAAATTAACTGAATCATATTGAATCGGACAGTTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8571#0 ---CAAGCAGTCTTGATTACTGACTTTCGTGAACAGTTT-TGTTTTACTGATAGTTCAAA 56
consensus_8571#1 ATGTACTTTATTTTAAAAAAAAGGCTTGTTGCAAGATAAGTAATTCAATAGAAAATTAA- 59
* * ** * * ** ** * * * ** * * * * **
consensus_8571#0 CCTGGATTATTCTGATAACGAATAAGCGGTAGATTTAA-ATGGGACACAGACTACAAGCA 115
consensus_8571#1 -CTAAAT-GTTCTATTATTGCACACAACATAAAATGAACACGTTATA-AAAGCACAAATA 116
** ** **** ** * * * ** * * ** * * * * * * **** *
consensus_8571#0 AT-GGCCAATTTTGTAAGAGAGAGGTTTTGATATGGTTAGGTAGATACAAGCAAGTCTAG 174
consensus_8571#1 TTTGAACAAACTTTTGTATCCCAACTGTGAATGTAATGGATCAGTTAAAAG--GGTTTGA 174
* * *** ** * * * * ** * * ** ** *** ** *
consensus_8571#0 GTGATCGATAAATA--AATTTATTTCATTCCTTGTCTCGGAACGACAAACATCCTTTTCA 232
consensus_8571#1 TGTTTGGACAGGTGTTAGTCCAGTTTGCCAATAGAAGTACATTCGCATACATTCCGTTGA 234
* ** * * * * * ** * * * ** **** * ** *
consensus_8571#0 TCCTCAAAACACATTAATAGTTGTTGAAATGTCTTGTGACATAAAGCTTCATATATTTTC 292
consensus_8571#1 TGCACACTGGAT-TTTGTAGAT-TTGAAACG-CTGACGTAGCCAATGGTAGTCAGTACGA 291
* * ** * ** *** * ****** * ** * ** * * *
consensus_8571#0 TGTTGGTGATGTACAAATGT--ATTTTTCGCAATGAGGCACATCATAGTATGCAACAATT 350
consensus_8571#1 TGTTGCTACCAACCAATTGTTGAGTATCTATTTTGTAAC-CTTCTGGGTATGTAAAGAAT 350
***** * *** *** * * * ** * * ** ***** ** * *
consensus_8571#0 AAGTTAGAAGTCTTATTACTTAACAATTTCTTTCCA--TAAAACTGTATATTGTTCAAGT 408
consensus_8571#1 --GTTGTAGGTAGCGTTA----AAGATATATGTCCAATCGAAGCACTATATTCATCA-GT 403
*** * ** *** * ** * * **** ** * ****** *** **
consensus_8571#0 ACCATACTTATCACTCACCACGTAGTCACCAATCGGTCTACTTATAAAGTAGTTTACAGA 468
consensus_8571#1 AGTGAATGTG------AACACGTAGTCACCAAT-GGTCTACTTATAAAGTAGTTCACAGA 456
* * * * *************** ******************** *****
consensus_8571#0 ATATTCATAAATCCCACCTATTTCCACTTGCTGTGGGCACTTGGTAAAATTAACTGAATC 528
consensus_8571#1 ATATTCATAAATCCCACCTATTTCCACTTGCTGTGGGCACTTGGTAAAATTAACTGAATC 516
************************************************************
consensus_8571#0 ATATTGAATCGGACAGTTCGAGGACACTATCATGGAAATATTTGCGGTAATCTTTGGAGT 588
consensus_8571#1 ATATTGAATCGGACAGTTCG---------------------------------------- 536
********************
consensus_8571#0 CAACAATGCTTCCATTNTGATTGTTAAATTGGTACCAATAGGCGGGATCGACACTCCAGA 648
consensus_8571#1 ------------------------------------------------------------
consensus_8571#0 AAAAAGACCGACTTTGAATCGCATCATAATACTGAAATCATTTGAATCATTGGCAGGAGA 708
consensus_8571#1 ------------------------------------------------------------
consensus_8571#0 GGATGAAACACATATCTGACTTGTCATTGTGAACTCCGAAGGCTACGGAAAACAATTAAC 768
consensus_8571#1 ------------------------------------------------------------
consensus_8571#0 AAGAATGGATTAAAGGCTAGAGTTCTCAGAAA 800
consensus_8571#1 --------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||