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Schistosoma mansoni
cluster # 8590 cluster # 8590       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8590#0 length = 951 sequences # 6  
consensus_8590#1 length = 555 sequences # 1  

consensusID : consensus_8590#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 951
fasta sequence
                              [AACAAGTCGTTGACGCAGAATTACTGATTGTAAAAGGGAAACTAAGTTGCTAACAGTCCAATACCATACCAAAGCCGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACGAATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAGTAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAACCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTGAAGAAACACATATTTAAAGGTATTGAGTGGATTCAAATTATTGTTCTTCATGAGCTGGCTCATCTTTTCAGAAGTACGCATCATTTCAACATAGTTTCCAGAAAGTCTAGCACGCGTCAAACTTTCCTGTAAGACAGTGACTTGAGGTATAATATTCGTATATTCAGCCAAATGACGTCGTTGACGCACCATAACGGGAAACATACACATACGAATTAAAATTGTTGAAGCCGCAATAGCGCCCCACCAGGGTAAATCTAAGTGCACATGTAGAGTCTCCAACAAGGATTGATACCAACCCGAAGGCCAATAGCTATTCAAACCCAGAGAGGCTAGGGTTGGTTCACCCAAAGTATTCAAGACGACTTCGTTAGGTGGCAACGGAGGCTCAGGAAGGGTACAATCAGAAGGAGCTGATAGGTAGGTGTTGGTAGAGAGTTTTCTCATCATCGAAGGAACAGAACTTGTTTTCTGAATTAAGACTGTTTCCGAGAAAATTTTCGTTATTCTGCTTAGTCGAATCATGTCCTTGTGACTAATAAATGTTGCCAACAGAAAACTAGTGATCGTAAATGAATTACCACTAAAGAGAACGACGAANAGCGA]

[-] EMBL CD094599             [AACAAGTCGTTGACGCAGAATTACTGATTGTAAAAGGGAAACTAAGTTGCTAACAGTCCAATACCATACCAAAGCCGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACGAATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAGTAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAACCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTGAAGAAACACATATTTAAAGGTATTGAGTGGATTCAAATTATTGTTCTTCATGAGCTGGCTCATCTTTTCAGAAGTACGCATCATTTCAACATAGTTTCCAGAAAGTCTAGCACGCGTCAAACTTTCCTGTAAGACAGTGACTTGAGGTATAATATTCGTATATTCAGCCAAATGACGTCGTTGACGCACCATAACGGGAAACATACACATACGAATTAAAATTGTTGAAGCCGCAATAGCGCCCCACCAGGGTAAATCTAAGTGCACATGTAGAGTCTCCAACAAGGATTG                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD179886             [                                                                    CCAAAGCCGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACGAATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAGTAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAACCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTGAAGAAACACATATTTAAAGGTATTGAGTGGATTCAAATTATTGTTCTTCATGAGCTGGCTCATCTTTTCAGAAGTACGCATCATTTCAACATAGTTTCCAGAAAGTCTAGCACGCGTCAAACTTTCCTGTAAGACAGTGACTTGAGGTATAATATTCGTATATTCAGCCAAATGAC                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD179924             [                                                                    CCAAAGCCGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACGAATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAGTAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAACCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTGAAGAAACACATATTTAAAGGTATTGAGTGGATTCAAATTATTGTTCTTCATGAGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD094440             [                                                                                                                                              GGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAGTAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAACCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTGAAGAAACACATATTTAAAGGTATTGAGTGGATTCAAATTATTGTTCTTCATGAGCTGGCTCATCTTTTCAGAAGTACGCATCATTTCAACATAGTTTCCAGAAAGTCTAGCACGCGTCAAACTTTCCTGTAAGACAGTGACTTGAGGTATAATATTCGTATATTCAGCCAAATGACGTCGTTGACGCACCATAACGGGAAACATACACATACGAATTAAAATTGTTGAAGCCGCAATAGCGCCCCACCAGGGTAAATCTAAGTGCACATGTAGAGTCTCCAACAAGGATTG                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD124203             [                                                                                                                                                                                                                                                                                         TAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTGAAGAAACACATATTTAAAGGTATTGAGTGGATTCAAATTATTGTTCTTCATGAGCTGGCTCATCTTTTCAGAAGTACGCATCATCTCAACATAGTTTCCAGAAAGTCTAGCACGCGTCAAACTTTCCTGTAAGACAGTGACTTGAGGTATAATATTCGTATATTCAGCCAAATGACGTCGTTGACGCACCATAACGGGAAACATACACATACGAATTAAAATTGTTGAAGCCGCAATAGCGCCCCACCAGGGTAAATCTAAGTGCACATGTAGAGTCTCCAACAAGGATTGATACCAACCCGAAGGCCAATAGCTATTCAAACCCAGAGAGGCTAGGGTTGGTTCACCCAAAGTATTCAAGACGACTTCGTTAGGTGGCAACGGAGGCTCAGGAAGGGTACAATCAGAAGGAGCTGATAGGTAGGTGTTGGTAGAGAGTTTTCTCATCATCGAAGGAACAGAACTTGTTTTCTGAATTAAGACTGTTTCCGAGAAAATTTTCGTTATTCTGCTTAGTCGAATCATGTCCTTGTGACTAATAAATGTTGCCAACAGAAAACTAGTGATCGTAAATGAATTACCACTAAAGAGAACGACGAANAGCGA]
[-] EMBL CD084002             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ACGAATTAAAATTGTTGAAGCCGCAATAGCGCCCCACCAGGGTAAATCTAAGTGCACATGTAGAGTCTCCAACAAGGATTGATACCAACCCGAAGGCCAATAGCTATTCAAACCCAGAGAGGCTAGGGTTGGTTCACCCAAAGTATTCAAGACGACTTCGTTAGGTGGCAACGGAGGCTCAGGAAGGATACAATCAGAAGGAGCTGATAGGTAGGTGTTGGTAGAGAGTTTTCTCATCATCGAAGGAACAGAACTTGTTTTCTGAATTAAGACTGTTTCCGAGAAAATTTTCGTTATTCTGCTTAGTCGAATCATGTCCTTGTGACTAATAAATGTTGCCAACAGAAAACTAGTGATCGTAAATGAATTACCACTAAAGAGAACGACGAAAAGCGA]


>consensus_8590#0 AACAAGTCGTTGACGCAGAATTACTGATTGTAAAAGGGAAACTAAGTTGCTAACAGTCCA ATACCATACCAAAGCCGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGC TCTTGAAAATACACGAATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTC AAATGTCAGTAAGAGTAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGC TGTTAAGTCGGTAAACCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAAC CAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTGAAGAAACACATATTT AAAGGTATTGAGTGGATTCAAATTATTGTTCTTCATGAGCTGGCTCATCTTTTCAGAAGT ACGCATCATTTCAACATAGTTTCCAGAAAGTCTAGCACGCGTCAAACTTTCCTGTAAGAC AGTGACTTGAGGTATAATATTCGTATATTCAGCCAAATGACGTCGTTGACGCACCATAAC GGGAAACATACACATACGAATTAAAATTGTTGAAGCCGCAATAGCGCCCCACCAGGGTAA ATCTAAGTGCACATGTAGAGTCTCCAACAAGGATTGATACCAACCCGAAGGCCAATAGCT ATTCAAACCCAGAGAGGCTAGGGTTGGTTCACCCAAAGTATTCAAGACGACTTCGTTAGG TGGCAACGGAGGCTCAGGAAGGGTACAATCAGAAGGAGCTGATAGGTAGGTGTTGGTAGA GAGTTTTCTCATCATCGAAGGAACAGAACTTGTTTTCTGAATTAAGACTGTTTCCGAGAA AATTTTCGTTATTCTGCTTAGTCGAATCATGTCCTTGTGACTAATAAATGTTGCCAACAG AAAACTAGTGATCGTAAATGAATTACCACTAAAGAGAACGACGAANAGCGA



consensusID : consensus_8590#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 555
fasta sequence
                              [GTGACCAGATTTCTGCCAAGCTTTCGCATCTATTCGTTCTCTTGAATCCAACTCCGCTAACAAACGTGAATTATTTAACGATTCTTTGAACCCTGCGATGAAACCACGTTTCTTTTCGATCACTGGAGGAGGTTTTCGAACAGAAGGGAGGTTTAAATAAGAACGAACAAGTCGTTGACGCAGAATTACTGATTGTAAAAGGGAAACTAAGTCGCTAACAGTCCAATACCATACCAAAGCCGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACGAATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAGTAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAACCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTCTGCATCAACTTGTTTGATACTTTTCTCCTTTACACCTGCCTCCGT]

[+] EMBL CD178146             [GTGACCAGATTTCTGCCAAGCTTTCGCATCTATTCGTTCTCTTGAATCCAACTCCGCTAACAAACGTGAATTATTTAACGATTCTTTGAACCCTGCGATGAAACCACGTTTCTTTTCGATCACTGGAGGAGGTTTTCGAACAGAAGGGAGGTTTAAATAAGAACGAACAAGTCGTTGACGCAGAATTACTGATTGTAAAAGGGAAACTAAGTCGCTAACAGTCCAATACCATACCAAAGCCGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACGAATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAGTAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAACCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTCTGCATCAACTTGTTTGATACTTTTCTCCTTTACACCTGCCTCCGT]


>consensus_8590#1 GTGACCAGATTTCTGCCAAGCTTTCGCATCTATTCGTTCTCTTGAATCCAACTCCGCTAA CAAACGTGAATTATTTAACGATTCTTTGAACCCTGCGATGAAACCACGTTTCTTTTCGAT CACTGGAGGAGGTTTTCGAACAGAAGGGAGGTTTAAATAAGAACGAACAAGTCGTTGACG CAGAATTACTGATTGTAAAAGGGAAACTAAGTCGCTAACAGTCCAATACCATACCAAAGC CGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACG AATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAG TAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAA CCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCC TGTGAAAACACCAAGGAAAATTGGGGCTTCTGCATCAACTTGTTTGATACTTTTCTCCTT TACACCTGCCTCCGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8590#0      ------------------------------------------------------------
consensus_8590#1      GTGACCAGATTTCTGCCAAGCTTTCGCATCTATTCGTTCTCTTGAATCCAACTCCGCTAA 60
                                                                                  

consensus_8590#0      ------------------------------------------------------------
consensus_8590#1      CAAACGTGAATTATTTAACGATTCTTTGAACCCTGCGATGAAACCACGTTTCTTTTCGAT 120
                                                                                  

consensus_8590#0      ---------------------------------------------AACAAGTCGTTGACG 15
consensus_8590#1      CACTGGAGGAGGTTTTCGAACAGAAGGGAGGTTTAAATAAGAACGAACAAGTCGTTGACG 180
                                                                   ***************

consensus_8590#0      CAGAATTACTGATTGTAAAAGGGAAACTAAGTTGCTAACAGTCCAATACCATACCAAAGC 75
consensus_8590#1      CAGAATTACTGATTGTAAAAGGGAAACTAAGTCGCTAACAGTCCAATACCATACCAAAGC 240
                      ******************************** ***************************

consensus_8590#0      CGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACG 135
consensus_8590#1      CGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACG 300
                      ************************************************************

consensus_8590#0      AATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAG 195
consensus_8590#1      AATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAG 360
                      ************************************************************

consensus_8590#0      TAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAA 255
consensus_8590#1      TAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAA 420
                      ************************************************************

consensus_8590#0      CCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCC 315
consensus_8590#1      CCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCC 480
                      ************************************************************

consensus_8590#0      TGTGAAAACACCAAGGAAAATTGGGGCTTGAAGAAACACATATTTAAAGGTATTGAGTGG 375
consensus_8590#1      TGTGAAAACACCAAGGAAAATTGGGGCTTCTGCATCAACTTGTTT---GATACTTTTCTC 537
                      *****************************    *   ** * ***   * ** *      

consensus_8590#0      ATTCAAATTATTGTTCTTCATGAGCTGGCTCATCTTTTCAGAAGTACGCATCATTTCAAC 435
consensus_8590#1      CTTTACACCTGCCTCCGT------------------------------------------ 555
                       ** * *      * * *                                          

consensus_8590#0      ATAGTTTCCAGAAAGTCTAGCACGCGTCAAACTTTCCTGTAAGACAGTGACTTGAGGTAT 495
consensus_8590#1      ------------------------------------------------------------
                                                                                  

consensus_8590#0      AATATTCGTATATTCAGCCAAATGACGTCGTTGACGCACCATAACGGGAAACATACACAT 555
consensus_8590#1      ------------------------------------------------------------
                                                                                  

consensus_8590#0      ACGAATTAAAATTGTTGAAGCCGCAATAGCGCCCCACCAGGGTAAATCTAAGTGCACATG 615
consensus_8590#1      ------------------------------------------------------------
                                                                                  

consensus_8590#0      TAGAGTCTCCAACAAGGATTGATACCAACCCGAAGGCCAATAGCTATTCAAACCCAGAGA 675
consensus_8590#1      ------------------------------------------------------------
                                                                                  

consensus_8590#0      GGCTAGGGTTGGTTCACCCAAAGTATTCAAGACGACTTCGTTAGGTGGCAACGGAGGCTC 735
consensus_8590#1      ------------------------------------------------------------
                                                                                  

consensus_8590#0      AGGAAGGGTACAATCAGAAGGAGCTGATAGGTAGGTGTTGGTAGAGAGTTTTCTCATCAT 795
consensus_8590#1      ------------------------------------------------------------
                                                                                  

consensus_8590#0      CGAAGGAACAGAACTTGTTTTCTGAATTAAGACTGTTTCCGAGAAAATTTTCGTTATTCT 855
consensus_8590#1      ------------------------------------------------------------
                                                                                  

consensus_8590#0      GCTTAGTCGAATCATGTCCTTGTGACTAATAAATGTTGCCAACAGAAAACTAGTGATCGT 915
consensus_8590#1      ------------------------------------------------------------
                                                                                  

consensus_8590#0      AAATGAATTACCACTAAAGAGAACGACGAANAGCGA 951
consensus_8590#1      ------------------------------------
                                                          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)