These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8590#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 951 fasta sequence [AACAAGTCGTTGACGCAGAATTACTGATTGTAAAAGGGAAACTAAGTTGCTAACAGTCCAATACCATACCAAAGCCGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACGAATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAGTAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAACCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTGAAGAAACACATATTTAAAGGTATTGAGTGGATTCAAATTATTGTTCTTCATGAGCTGGCTCATCTTTTCAGAAGTACGCATCATTTCAACATAGTTTCCAGAAAGTCTAGCACGCGTCAAACTTTCCTGTAAGACAGTGACTTGAGGTATAATATTCGTATATTCAGCCAAATGACGTCGTTGACGCACCATAACGGGAAACATACACATACGAATTAAAATTGTTGAAGCCGCAATAGCGCCCCACCAGGGTAAATCTAAGTGCACATGTAGAGTCTCCAACAAGGATTGATACCAACCCGAAGGCCAATAGCTATTCAAACCCAGAGAGGCTAGGGTTGGTTCACCCAAAGTATTCAAGACGACTTCGTTAGGTGGCAACGGAGGCTCAGGAAGGGTACAATCAGAAGGAGCTGATAGGTAGGTGTTGGTAGAGAGTTTTCTCATCATCGAAGGAACAGAACTTGTTTTCTGAATTAAGACTGTTTCCGAGAAAATTTTCGTTATTCTGCTTAGTCGAATCATGTCCTTGTGACTAATAAATGTTGCCAACAGAAAACTAGTGATCGTAAATGAATTACCACTAAAGAGAACGACGAANAGCGA] [-] EMBL CD094599 [AACAAGTCGTTGACGCAGAATTACTGATTGTAAAAGGGAAACTAAGTTGCTAACAGTCCAATACCATACCAAAGCCGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACGAATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAGTAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAACCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTGAAGAAACACATATTTAAAGGTATTGAGTGGATTCAAATTATTGTTCTTCATGAGCTGGCTCATCTTTTCAGAAGTACGCATCATTTCAACATAGTTTCCAGAAAGTCTAGCACGCGTCAAACTTTCCTGTAAGACAGTGACTTGAGGTATAATATTCGTATATTCAGCCAAATGACGTCGTTGACGCACCATAACGGGAAACATACACATACGAATTAAAATTGTTGAAGCCGCAATAGCGCCCCACCAGGGTAAATCTAAGTGCACATGTAGAGTCTCCAACAAGGATTG ] [+] EMBL CD179886 [ CCAAAGCCGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACGAATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAGTAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAACCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTGAAGAAACACATATTTAAAGGTATTGAGTGGATTCAAATTATTGTTCTTCATGAGCTGGCTCATCTTTTCAGAAGTACGCATCATTTCAACATAGTTTCCAGAAAGTCTAGCACGCGTCAAACTTTCCTGTAAGACAGTGACTTGAGGTATAATATTCGTATATTCAGCCAAATGAC ] [+] EMBL CD179924 [ CCAAAGCCGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACGAATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAGTAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAACCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTGAAGAAACACATATTTAAAGGTATTGAGTGGATTCAAATTATTGTTCTTCATGAGCTG ] [-] EMBL CD094440 [ GGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAGTAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAACCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTGAAGAAACACATATTTAAAGGTATTGAGTGGATTCAAATTATTGTTCTTCATGAGCTGGCTCATCTTTTCAGAAGTACGCATCATTTCAACATAGTTTCCAGAAAGTCTAGCACGCGTCAAACTTTCCTGTAAGACAGTGACTTGAGGTATAATATTCGTATATTCAGCCAAATGACGTCGTTGACGCACCATAACGGGAAACATACACATACGAATTAAAATTGTTGAAGCCGCAATAGCGCCCCACCAGGGTAAATCTAAGTGCACATGTAGAGTCTCCAACAAGGATTG ] [+] EMBL CD124203 [ TAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTGAAGAAACACATATTTAAAGGTATTGAGTGGATTCAAATTATTGTTCTTCATGAGCTGGCTCATCTTTTCAGAAGTACGCATCATCTCAACATAGTTTCCAGAAAGTCTAGCACGCGTCAAACTTTCCTGTAAGACAGTGACTTGAGGTATAATATTCGTATATTCAGCCAAATGACGTCGTTGACGCACCATAACGGGAAACATACACATACGAATTAAAATTGTTGAAGCCGCAATAGCGCCCCACCAGGGTAAATCTAAGTGCACATGTAGAGTCTCCAACAAGGATTGATACCAACCCGAAGGCCAATAGCTATTCAAACCCAGAGAGGCTAGGGTTGGTTCACCCAAAGTATTCAAGACGACTTCGTTAGGTGGCAACGGAGGCTCAGGAAGGGTACAATCAGAAGGAGCTGATAGGTAGGTGTTGGTAGAGAGTTTTCTCATCATCGAAGGAACAGAACTTGTTTTCTGAATTAAGACTGTTTCCGAGAAAATTTTCGTTATTCTGCTTAGTCGAATCATGTCCTTGTGACTAATAAATGTTGCCAACAGAAAACTAGTGATCGTAAATGAATTACCACTAAAGAGAACGACGAANAGCGA] [-] EMBL CD084002 [ ACGAATTAAAATTGTTGAAGCCGCAATAGCGCCCCACCAGGGTAAATCTAAGTGCACATGTAGAGTCTCCAACAAGGATTGATACCAACCCGAAGGCCAATAGCTATTCAAACCCAGAGAGGCTAGGGTTGGTTCACCCAAAGTATTCAAGACGACTTCGTTAGGTGGCAACGGAGGCTCAGGAAGGATACAATCAGAAGGAGCTGATAGGTAGGTGTTGGTAGAGAGTTTTCTCATCATCGAAGGAACAGAACTTGTTTTCTGAATTAAGACTGTTTCCGAGAAAATTTTCGTTATTCTGCTTAGTCGAATCATGTCCTTGTGACTAATAAATGTTGCCAACAGAAAACTAGTGATCGTAAATGAATTACCACTAAAGAGAACGACGAAAAGCGA] consensusID : consensus_8590#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [GTGACCAGATTTCTGCCAAGCTTTCGCATCTATTCGTTCTCTTGAATCCAACTCCGCTAACAAACGTGAATTATTTAACGATTCTTTGAACCCTGCGATGAAACCACGTTTCTTTTCGATCACTGGAGGAGGTTTTCGAACAGAAGGGAGGTTTAAATAAGAACGAACAAGTCGTTGACGCAGAATTACTGATTGTAAAAGGGAAACTAAGTCGCTAACAGTCCAATACCATACCAAAGCCGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACGAATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAGTAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAACCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTCTGCATCAACTTGTTTGATACTTTTCTCCTTTACACCTGCCTCCGT] [+] EMBL CD178146 [GTGACCAGATTTCTGCCAAGCTTTCGCATCTATTCGTTCTCTTGAATCCAACTCCGCTAACAAACGTGAATTATTTAACGATTCTTTGAACCCTGCGATGAAACCACGTTTCTTTTCGATCACTGGAGGAGGTTTTCGAACAGAAGGGAGGTTTAAATAAGAACGAACAAGTCGTTGACGCAGAATTACTGATTGTAAAAGGGAAACTAAGTCGCTAACAGTCCAATACCATACCAAAGCCGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACGAATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAGTAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAACCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCCTGTGAAAACACCAAGGAAAATTGGGGCTTCTGCATCAACTTGTTTGATACTTTTCTCCTTTACACCTGCCTCCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8590#0 ------------------------------------------------------------ consensus_8590#1 GTGACCAGATTTCTGCCAAGCTTTCGCATCTATTCGTTCTCTTGAATCCAACTCCGCTAA 60 consensus_8590#0 ------------------------------------------------------------ consensus_8590#1 CAAACGTGAATTATTTAACGATTCTTTGAACCCTGCGATGAAACCACGTTTCTTTTCGAT 120 consensus_8590#0 ---------------------------------------------AACAAGTCGTTGACG 15 consensus_8590#1 CACTGGAGGAGGTTTTCGAACAGAAGGGAGGTTTAAATAAGAACGAACAAGTCGTTGACG 180 *************** consensus_8590#0 CAGAATTACTGATTGTAAAAGGGAAACTAAGTTGCTAACAGTCCAATACCATACCAAAGC 75 consensus_8590#1 CAGAATTACTGATTGTAAAAGGGAAACTAAGTCGCTAACAGTCCAATACCATACCAAAGC 240 ******************************** *************************** consensus_8590#0 CGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACG 135 consensus_8590#1 CGATGGCATGTTCATCACAAAAAGGAAACCAACAACCGGTAACGCTCTTGAAAATACACG 300 ************************************************************ consensus_8590#0 AATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAG 195 consensus_8590#1 AATAGTAGGTTGTGTCTGACCCGAACGTAATTCAGCACCAGTCTCAAATGTCAGTAAGAG 360 ************************************************************ consensus_8590#0 TAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAA 255 consensus_8590#1 TAAACTCATGGAGAGAAATGGTAAGATGCAATAGGGGTCGGATGCTGTTAAGTCGGTAAA 420 ************************************************************ consensus_8590#0 CCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCC 315 consensus_8590#1 CCAAGCAGTACCACCAGTCTGCAAGCTAGTTACTGGTAGATTAACCAAACCTCGAATTCC 480 ************************************************************ consensus_8590#0 TGTGAAAACACCAAGGAAAATTGGGGCTTGAAGAAACACATATTTAAAGGTATTGAGTGG 375 consensus_8590#1 TGTGAAAACACCAAGGAAAATTGGGGCTTCTGCATCAACTTGTTT---GATACTTTTCTC 537 ***************************** * ** * *** * ** * consensus_8590#0 ATTCAAATTATTGTTCTTCATGAGCTGGCTCATCTTTTCAGAAGTACGCATCATTTCAAC 435 consensus_8590#1 CTTTACACCTGCCTCCGT------------------------------------------ 555 ** * * * * * consensus_8590#0 ATAGTTTCCAGAAAGTCTAGCACGCGTCAAACTTTCCTGTAAGACAGTGACTTGAGGTAT 495 consensus_8590#1 ------------------------------------------------------------ consensus_8590#0 AATATTCGTATATTCAGCCAAATGACGTCGTTGACGCACCATAACGGGAAACATACACAT 555 consensus_8590#1 ------------------------------------------------------------ consensus_8590#0 ACGAATTAAAATTGTTGAAGCCGCAATAGCGCCCCACCAGGGTAAATCTAAGTGCACATG 615 consensus_8590#1 ------------------------------------------------------------ consensus_8590#0 TAGAGTCTCCAACAAGGATTGATACCAACCCGAAGGCCAATAGCTATTCAAACCCAGAGA 675 consensus_8590#1 ------------------------------------------------------------ consensus_8590#0 GGCTAGGGTTGGTTCACCCAAAGTATTCAAGACGACTTCGTTAGGTGGCAACGGAGGCTC 735 consensus_8590#1 ------------------------------------------------------------ consensus_8590#0 AGGAAGGGTACAATCAGAAGGAGCTGATAGGTAGGTGTTGGTAGAGAGTTTTCTCATCAT 795 consensus_8590#1 ------------------------------------------------------------ consensus_8590#0 CGAAGGAACAGAACTTGTTTTCTGAATTAAGACTGTTTCCGAGAAAATTTTCGTTATTCT 855 consensus_8590#1 ------------------------------------------------------------ consensus_8590#0 GCTTAGTCGAATCATGTCCTTGTGACTAATAAATGTTGCCAACAGAAAACTAGTGATCGT 915 consensus_8590#1 ------------------------------------------------------------ consensus_8590#0 AAATGAATTACCACTAAAGAGAACGACGAANAGCGA 951 consensus_8590#1 ------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||