These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8594#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 843 fasta sequence [CGATCAATCTGGAGTTCCTCCTTACCGATAAACTTTCAACGTATTTGTCCAAGGTTGGTGGTCTAGATATATGCTCACCAGAACTCAAAAATTCAATAAACCAAGTACTA-GAAAAAAATTCAGTTGTCCCGTTTTCAGTTGTAAATGACTGCTATCACCTAACGAAGATGCTGTCGGATACTAGCAAGGACAATATTTATCTCCAATTTTGGCGCATTTCTCTGGACACTTCAATAGTCTTTCCAGCGATAAAGCAGACTTTTAGAAATCAAGTTTTTGATGCTCACTGCGAAGAACTAAAAAATAAGTATGATAACAAAGGCTACG-AAAAAATAACAAAAGATATTGGTACACCCATGGTCTTTTCAACAACTTCCAAGGTTCAGAAAACTTGCTTTTCTGAACTCAAATGCGCTAGGAAACAACTCTTTATGGTTCTCAATTTCATTGTTATTGTGATGTCCGCCTTTGCGTTCGGATATTTCCTTCCTGATTTAATGTTCGCCAGTTATTCTATATCACTCTTCTCGCGTATTGTCTGTGGTTTGTTGTGTGCGGCAGTAGTTCTGGTTGCTGACTTCTACTTCCTGCTTAGAAATTTCAGTTCATTGGAGAAAATGTATGGGTGATTCTTAATTTGCAATGTTTTGGGAGTACTGATGTTTCAGACTTATTAATGAATAACTTTGAATAACTCGTACAGGTTTATGCAGCCTTCTTAACTAGTTTTTCGGATACTTATGCGGTCAAATGAGACTTTGCTACACTTTAAATGCATCACCAGAATTTTCACTCTCAGTGCCTTCTATCAAGCTTTTCAGGATAATAAGTAACATGAAACGT] [+] EMBL AI976703 [CGATCAATCTGGAGTTCCTCCTTACCGATAAACTTTCAACGTATTTGTCCAAGGTTGGTGGTCTAGATATATGCTCACCAGAACTCAAAAATTCAATAAACCAAGTACTA GAAAAAAATTCAGTTGTCCCGTTTTCAGTTGTAAATGACTGCTATCACCTAACGAAGATGCTGTCGGATACTAGCAAGGACAATATTTATCTCCAATTTTGGCGCATTTCTCTGGACACTTCAATAGTCTTTCCAGCGATAAAGCAGACTTTTAGAAATCAAGTTTTTGATGCTCACTGCGAAGAACTAAAAAATAAGTATGATAACAAAGGCTACG AAAAAATAACAAAAGATATTGGTACACCCATGGTCTTTTCAACAACTTCCAAGGTTCAGA ] [+] EMBL CD079093 [ GATCAATCTGGAGTTCCTCCTTACCGATAAACTTTCAACGTATTTGTCCAAGGTTGGTGGTCTAGATATATGCTCACCAGAACTCAAAAATTCAATAAACCAAGTACTA GAAAAAAATTCAGTTGTCCCGTTTTCAGTTGTAAATGACTGCTATCACCTAACGAAGATGCTGTCGGATACTAGCAAGGACAATATTTATCTCCAATTTTGGCGCATTTCTCTGGACACTTCAATAGTCTTTCCAGCGATAAAGCAGACTTTTAGAAATCAAGTTTTTGATGCTCACTGCGAAGAACTAAAAAATAAGTATGATAACAAAGGCTACG AAAAAATAACAAAAGATATTGGTACACCCATGGTCTTTTCAACAACTTCCAAGGTTCAGAAAACTTGCTTTTCTGAACTCAAATGCGCTAGGAAACAACTCTTTATGGTTCTCAATTTCATTGTTATTGTGATGTCCGCCTTTGCGTTCGGATATTTCCTTCCTGATTTAATGTTCGCCAGTTATTCTATATCACTCTTCTCGCGTATTGTCTGTGGTTTGTTGTGTGCGGCAGTAGTTCTGGTTGCTGACTTCTACTTCCTGCTTAGAAATTTCAGTTCATTGGAG AAATGTATGG ] [+] EMBL CD178348 [ TCTAGATATATGCTCACCAGAACTCAAAAATTCAATAAACCAAGTACTANGAAAAAAATTCAGTTGTCCCGTTTTCAGTTGTAAATGACTGCTATCACCTAACGAAGATGCTGTCGGATACTAGCAAGGACAATATTTATCTCCAATTTTGGCGCATTTCTCTGGACACTTCAATAGTCTTTCCAGCGATAAAGCAGACTTTTAGAAATCAAGTTTTCGATGCTCACTGCGAAGAACTAAAAAATAAATATGATAACAAAGGCTACG AAAAAATAACAAAAGATATTGGTACACCCATGGTCTTTTCAACAACTTCCAAGGTTCAGAAAACTTGCTTTTCTGAACTCAAATGCGCTAGGAAACAACTCTTTATGGTTCTCAATTTCATTGTTATTGTGATGTCCGCCTTTGCGT ] [-] EMBL CD073546 [ TTTAGAAATCAAGTTTTTGATGCTCACTGCGAAGAACTAAAAAATAAGTATGATAACAAAGGCTACG AAAAAATAACAAAAGATATTGGTACACCCATGGTCTTTTCAACAACTTCCAAGGTTCAGAAAACTTGCTTTTCTGAACTCAAATGCGCTAGGAAACAACTCTTTATGGTTCTCAATTTCATTGTTATTGTGATGTCCGCCTTTGCGTTCGGATATTTCCTTCCTGATTTAATGTTCGCCAGTTATTCTATATCACTCTTCTCGCGTATTGTCTGTGGTTTGTTGTGTGCGGCAGTAGTTCTGGTTGCTGACTTCTACTTCCTGCTTAGAAATTTCAGTTCATTGGAGAAAATGTATGGGTGATTCTTAATTTGCAATGTTTTGGGAGTACTGATGTTTCAGACTTATTAATGAATAACTTTGAATAACTCGTACAGGTTTATGCAGCCTTCTTAACTAGTTTTTCGGATACTTATGCGGTCAAATGAGACTTTGCTACACTTTAAATGCATCACCAGAATTTTCACTCTCAGTGCCTTCTATCAAGCTTTTCAGGATAATAAGTAACATGAAACGT] [+] EMBL CD183205 [ TACGAAAAAAATAACAAAAGATATTGGTACACCCATGGTCTTTTCAACAACTTCCAAGGTTCAGAAAACTTGCTTTTCTGAACTCAAATGCGCTAGGAAACAACTCTTTATGGTTCTCAATTTCATTGTTATTGTGATGTCCGCCTTTGCGTTCGGATATTTCCTTCCTGATTTAATGTTCGCCAGTTATTCTATATCACTCTTCTCGCGTATTGTCTGTGGTTTGTTGTGTGCGGCAGTAGTTCTGGTTGCTGACTTCTACTTCCTGCTTAGAAATTTCAGTTCATTGGAGAAAATGTATGGGTGATTCTTAATTTGCAATGTTTTGGGAGTACTGATGTTTCAGACTTATTAATGAATAACTNTGAATAACTCGTACAGGTTTATGCAGCCTTCTTAACTAGTTTTTCGGATACTTATGCGGTCAAATGAGACTTTGCTACACTTT ] [+] EMBL AI977213 [ TTCTCAATTTCATTGTTATTGTGATGTCCGCCTTTGCGTTCGGATATTTCCTTCCTGATTTAATGTTCGCCAGTTATTCTATATCACTCTTCTCGCGTATTGTCTGTGGTTTGTTGTGTGCGGCAGTAGTTCTGGTTGCTGACTTCTACTTCCTGCTTAGAAATTTCAGTTCATTGGAGAAAATGTATGGGTGATTCTTAATTTGCAATGTTTTGGGAGTACTGATGTTTCAGACTTATTAATGAATAACTTTGAATAACTCGTACAGGTTTATGCAGCCTTCTTAACTAGTTTTTCGGATACTTATGCGGTCAAATGAGACTTTGCTACACTTTAAATGCATCAC ] consensusID : consensus_8594#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 776 fasta sequence [CTCGCGGCCAAAAATTCGGCACGAGGGCTCAAAAATTCAATAAACCAAGTACTAGAAAAAAATTCAGTTGTCCCGTTTTCAGTTGTAAATGACTGCTATCACCTAACGAAGATGCTGTCGGATACTAGCAAGGACAATATTTATCTCCAATTTTGGCGCATTTCTCTGGACACTTCAATAGTCTTTCCAGCGATAAAGCAGACTTTTAGAAATCAAGTTTTTGATGCTCACTGCGAAGAACTAAAAAATAAATATGATAACAAAGGCTACGAAAAAATAACAAAAGATATTGGTACACCCATGGTCTTTTCAACAACTTCCAAGGTTCAGAAAACTTGCTTTTCTGAACTCAAATGCGCTAGGAAACAACTCTTTATGGTTCTCAATTTCATTGTTATTGTGATGTCCGCCTTTGCGTTCGGATATTTCCTTCCTGATTTAATGTTCGCCAGTTATTCTATATCACTCTTCTCGCGTATTGTCTGTGGTTTGTTGTGTGCGGCAGTAGTTCTGGTTGCTGACTTCTACTTCCTGCTTAGAAATTTCAGTTCATTGGAGAAAATGTATGGGNTGATCTAANTTTGCATGGTNTGGGAGTACTGATNGTTCANAATTATTAATGAAATACTTTGAAATACTCGTACAGGGTTATGCAGCCTTNCTAACTAGTTTTTTCGATAACTATGCGGTCAAAGAAAACTTGCTCCCTTTAAATGCATNACAGAATTTCACCTTTAGGGCCTTAATAAAACTTTTAAGATATAANTACCTGAAAC] [+] EMBL CD081919 [CTCGCGGCCAAAAATTCGGCACGAGGGCTCAAAAATTCAATAAACCAAGTACTAGAAAAAAATTCAGTTGTCCCGTTTTCAGTTGTAAATGACTGCTATCACCTAACGAAGATGCTGTCGGATACTAGCAAGGACAATATTTATCTCCAATTTTGGCGCATTTCTCTGGACACTTCAATAGTCTTTCCAGCGATAAAGCAGACTTTTAGAAATCAAGTTTTTGATGCTCACTGCGAAGAACTAAAAAATAAATATGATAACAAAGGCTACGAAAAAATAACAAAAGATATTGGTACACCCATGGTCTTTTCAACAACTTCCAAGGTTCAGAAAACTTGCTTTTCTGAACTCAAATGCGCTAGGAAACAACTCTTTATGGTTCTCAATTTCATTGTTATTGTGATGTCCGCCTTTGCGTTCGGATATTTCCTTCCTGATTTAATGTTCGCCAGTTATTCTATATCACTCTTCTCGCGTATTGTCTGTGGTTTGTTGTGTGCGGCAGTAGTTCTGGTTGCTGACTTCTACTTCCTGCTTAGAAATTTCAGTTCATTGGAGAAAATGTATGGGNTGATCTAANTTTGCATGGTNTGGGAGTACTGATNGTTCANAATTATTAATGAAATACTTTGAAATACTCGTACAGGGTTATGCAGCCTTNCTAACTAGTTTTTTCGATAACTATGCGGTCAAAGAAAACTTGCTCCCTTTAAATGCATNACAGAATTTCACCTTTAGGGCCTTAATAAAACTTTTAAGATATAANTACCTGAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8594#0 CGATCAATCTGGAGTTCCTCCTTACCGATAAACTTTCAACGTATTTGTCCAAGGTTGGTG 60 consensus_8594#1 ------------------------------------------------------CTCGCG 6 * * * consensus_8594#0 GTCTAGATATATGCTCACCAGAACTCAAAAATTCAATAAACCAAGTACTAGAAAAAAATT 120 consensus_8594#1 GCCAAAAATTCGGC--ACGAGGGCTCAAAAATTCAATAAACCAAGTACTAGAAAAAAATT 64 * * * * * ** ** ** ************************************* consensus_8594#0 CAGTTGTCCCGTTTTCAGTTGTAAATGACTGCTATCACCTAACGAAGATGCTGTCGGATA 180 consensus_8594#1 CAGTTGTCCCGTTTTCAGTTGTAAATGACTGCTATCACCTAACGAAGATGCTGTCGGATA 124 ************************************************************ consensus_8594#0 CTAGCAAGGACAATATTTATCTCCAATTTTGGCGCATTTCTCTGGACACTTCAATAGTCT 240 consensus_8594#1 CTAGCAAGGACAATATTTATCTCCAATTTTGGCGCATTTCTCTGGACACTTCAATAGTCT 184 ************************************************************ consensus_8594#0 TTCCAGCGATAAAGCAGACTTTTAGAAATCAAGTTTTTGATGCTCACTGCGAAGAACTAA 300 consensus_8594#1 TTCCAGCGATAAAGCAGACTTTTAGAAATCAAGTTTTTGATGCTCACTGCGAAGAACTAA 244 ************************************************************ consensus_8594#0 AAAATAAGTATGATAACAAAGGCTACGAAAAAATAACAAAAGATATTGGTACACCCATGG 360 consensus_8594#1 AAAATAAATATGATAACAAAGGCTACGAAAAAATAACAAAAGATATTGGTACACCCATGG 304 ******* **************************************************** consensus_8594#0 TCTTTTCAACAACTTCCAAGGTTCAGAAAACTTGCTTTTCTGAACTCAAATGCGCTAGGA 420 consensus_8594#1 TCTTTTCAACAACTTCCAAGGTTCAGAAAACTTGCTTTTCTGAACTCAAATGCGCTAGGA 364 ************************************************************ consensus_8594#0 AACAACTCTTTATGGTTCTCAATTTCATTGTTATTGTGATGTCCGCCTTTGCGTTCGGAT 480 consensus_8594#1 AACAACTCTTTATGGTTCTCAATTTCATTGTTATTGTGATGTCCGCCTTTGCGTTCGGAT 424 ************************************************************ consensus_8594#0 ATTTCCTTCCTGATTTAATGTTCGCCAGTTATTCTATATCACTCTTCTCGCGTATTGTCT 540 consensus_8594#1 ATTTCCTTCCTGATTTAATGTTCGCCAGTTATTCTATATCACTCTTCTCGCGTATTGTCT 484 ************************************************************ consensus_8594#0 GTGGTTTGTTGTGTGCGGCAGTAGTTCTGGTTGCTGACTTCTACTTCCTGCTTAGAAATT 600 consensus_8594#1 GTGGTTTGTTGTGTGCGGCAGTAGTTCTGGTTGCTGACTTCTACTTCCTGCTTAGAAATT 544 ************************************************************ consensus_8594#0 TCAGTTCATTGGAGAAAATGTATGGGTGATTCTTAATTTGCAATGTTTTGGGAGTACTGA 660 consensus_8594#1 TCAGTTCATTGGAGAAAATGTATGGGNTGATCTAANTTTGCA-TGGTNTGGGAGTACTGA 603 ************************** *** * ****** ** * ************ consensus_8594#0 TGTTTCAGACTTATTAATGAATAACTTTGAATAACTCGTACAGGTTTATGCAGCCTTCTT 720 consensus_8594#1 TNGTTCANAATTATTAATGAAATACTTTGAAATACTCGTACAGGGTTATGCAGCCTTNCT 663 * **** * *********** ******** *********** ************ * consensus_8594#0 AACTAGTTTTTCGGATACTTATGCGGTCAAATGAGACTTTGCTACACTTTAAATGCATCA 780 consensus_8594#1 AACTAGTTTTTTCGATAACTATGCGGTCAAA-GAAAACTTGCT-CCCTTTAAATGCATNA 721 *********** **** ************ ** * ***** * ************ * consensus_8594#0 CCAGAATTTTCACTCTCAGTGCCTTCTATCAAGCTTTTCAGGATAATAAGTAACATGAAA 840 consensus_8594#1 C-AGAATTT-CACCTTTAGGGCCT--TAATAAAACTTTTAAGATA-TAANTACC-TGAAA 775 * ******* *** * ** **** ** ** *** * **** *** ** * ***** consensus_8594#0 CGT 843 consensus_8594#1 C-- 776 * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||