cluster # 8599

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8599 cluster # 8599 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8599#0 length = 1073 sequences # 6

consensus_8599#1 length = 215 sequences # 1

consensusID : consensus_8599#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1073
fasta sequence

                              [AGCCATAATTCGGCACGACGTTTNGTGATGGCGGAGACAAGATTTCTATTTCAGGTAGGTTATTTTAATGGAGTTTCATTCTCTGAACTGGATAGTTTGATCGCGTTTAATCCTGTCAAAATGAATATGCAGATAATGACAGAATAAAGGTCAACAATAATTAACCAAAACCAAGTTTGACGGGACATGCTATCAGTAGGTTATGTGCGGAAAAGTTCGAATATTTCACTTCTACCTGAAGTCTGTACTAATGATGTTGTTCTATAGATCAATGAAAACTCCACCATTAAACTATTCAGGTCAAAAAATAAAGAAAAACTTTAAACTCAGGTTCCCATCACGCTCCTATTGACAGGTCTTCAGTGTGCATTGTAGATGTGTCTCTTTCACATGGAATGTAAAATATCAACTTGAACAGTCGTTAGCTATCAAATGCCCATGTATACAATATATGCTTGCCAATACAAAAATTGTACAGGCCGCCCTATCAAAACCGAAATATTTATCCAGATTTTTTAAACCGGATAGTTCAAGTTATTTGAATATTTTATCTACATTTGCTCATCAATATACATTAGACGAAGAAATGGGAATATCTGATTCCGCTGAAATTCAATATGCCATTAACGATTGTCTATTAAGACCAGATAATTATGTTTTGAAACCACAGAGAGAAGGTGGAGGGAATAATTATTTTGGAGAGGAACTTGTTCAGAAATTAAAGTCAATTATGGATCATTCTGAAAGAAAACTGTATGTACTTATGGAGCGTATACAACCATATATTTTTCAAAATTCTATATTGAATTCAACTTCAGCTTCTGAAGAATTGAAAGTCAAGAAAATGGTTACAGAGTTGGGTATTTTTGGTGCAATTCTTGCGTGTAAAGATGAAATCTTCCTAAATGAATTTTCTGGTCACCTTCTTCGATCAAAACCACTGGAATCGAATGAAGGTGGAATAGTAGCAGGTTACGGTTGCCTTGATTCTCCATTCCTCGTTTAATACATTTCAATTACTTTTATGTTGC-TCAGT-AAATAACAATT-AAACTA-TTTTAAAATATATATTATTC]

[+] EMBL CD081718             [AGCCATAATTCGGCACGACGTTTNGTGATGGCGGAGACAAGATTTCTATTTCAGGTAGGTTATTTTAATGGAGTTTCATTCTCTGAACTGGATAGTTTGATCGCGTTTAATCCTGTCAAAATGAATATGCAGATAATGACAGAATAAAGGTCAACAATAATTAACCAAAACCAAGTTTGACGGGACATGCTATCAGTAGGTTATGTGCGGAAAAGTTCGAATATTTCACTTCTACCTGAAGTCTGTACTAATGATGTTGTTCTATAGATCAATGAAAACTCCACCATTAAACTATTCAGGTCAAAAAATAAAGAAAAACTTTAAACTCAGGTTCCCATCACGCTCCTATTGACAGGTCTTCAGTGTGCATTGTAGATGTGTCTCTTTCACATGGAATGTAAAATATCAACTTGAACAGTCGTTAGCTATCAAATGCCCATGTATACAATATATGCTTGCCAATACAAAAATTGTACAGGCCGCCCTATCAAAACCGAAATATTTATCCAGATTTTTTAAACCGGATAGTTCAAGTTATTTGAATATTTTATCTACATTTGCTCATCAATATACATTAGACGAAGAAATGGGAATATCTGATTCCGCTGAAATTCAATATGCCATTAACGATTGTCTATTAAGACCAGATAATTATGTTTTGAAACCACAGAGAGAAGGTGGAGGGAATAATTATTTTGGAGAGGAACTTGTTCAGAAATTAAAGTCAATTATGGATCATTCTGAAAGAAAACTGTATGTACTTATGGAGCGTATACAACCATATATTTTTCAAAATTCTATATTGAATTCAACTTCAGCTTCTGAAGAATTGAAAGTCAAGAAAATGGTTACAGAGTTGGGTATTTTTGGTGCAATTCTTGCGTGTAAAGATGAAATCTTCCTAAATGAAATTTCTGGTCACCTTCTTCGATCAAAACCACTGGAATCGAATGAAAGTGGAATAGTANCAGGNTACGGTTGCCTTGATTCT CATTCCTCGNTT ATACACTTC ATTACCTTTATGTTGC TCAGT AAATAACAATT AAACTA TTTTAAAATATATA      ]
[-] EMBL CD077048             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AAATTCAATATGCCATTAACGATTGTCTATTAAGACCAGATAATTATGTTTTGAAACCACAGAGAGAAGGTGGAGGGAATAATTATTTTGGAGAGGAACTTGTTCAGAAATTAAAGTCAATTATGGATCATTCTGAAAGAAAACTGTATGTACTTATGGAGCGTATACAACCATATATTTTTCAAAATTCTATATTGAATTCAACTTCAGCTTCTGAAGAATTGAAAGTCAAGAAAATGGTTACAGAGTTGGGTATTTTTGGTGCAATTCTTGCGTGTAAAGATGAAATCTTCCTAAATGAATTTTCTGGTCACCTTCTTCGATCAAAACCACTGGAATCGAATGAAGGTGGAATAGTAGCAGGTTACGGTTGCCTTGATTCTCCATTCCTCGTTTAATACACTTCAATTACTTTTATGTTGCTTCAGTAAAATAACAATTAAAACTATTTTTAAAAAATATATTATTC]
[+] EMBL CD140498             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGGGAATAATTATTTTGGAGAGGAACTTGTTCAGAAATTAAAGTCAATTATGGATCATTCTGAAAGAAAACTGTATGTACTTATGGAGCGTATACAACCATATATTTTTCAAAATTCTATATTGAATTCAACTTCAGCTTCTGAAGAATTGAAAGTCAAGAAAATGGTTACAGAGTTGGGTATTTTTGGTGCAATTCTTGCGTGTAAAGATGAAATCTTCCTAAATGAATTTTCTGGTCACCTTCTTCGATCAAAACCACTGGAATCGAATGAAGGTGGAATAGTAGCAGGTTACGGTTGCCTTGATTCTCCATTCCTCGTTTAATACATTTCAATTACTTTT                                                     ]
[+] EMBL CD140546             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGGGAATAATTATTTTGGAGAGGAACTTGTTCAGAAATTAAAGTCAATTATGGATCATTCTGAAAGAAAACTGTATGTACTTATGGAGCGTATACAACCATATATTTTTCAAAATTCTATATTGAATTCAACTTCAGCTTCTGAAGAATTGAAAGTCAAGAAAATGGTTACAGAGTTGGGTATTTTTGGTGCAATTCTTGCGTGTAAAGATGAAATCTTCCTAAATGAATTTTCTGGTCACCTTCTTCGATCAAAACCACTGGAATCGAATGAAGGTGGAATAGTAGCAGGTTACGGTTGCCTTGATTCTCCATTCCTCGTTTAATACATTTCAATTACTTTT                                                     ]
[-] EMBL CD140574             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGGAATAATTATTTTGGAGAGGAACTTGTTCAGAAATTAAAGTCAATTATGGATCATTCTGAAAGAAAACTGTATGTACTTATGGAGCGTATACAACCATATATTTTTCAAAATTCTATATTGAATTCAACTTCAGCTTCTGAAGAATTGAAAGTCAAGAAAATGGTTACAGAGTTGGGTATTTTTGGTGCAATTCTTGCGTGTAAAGATGAAATCTTCCTAAATGAATTTTCTGGTCACCTTCTTCGATCAAAACCACTGGAATCGAATGAAGGTGGAATAGTAGCAGGTTACGGTTGCCTTGATTCTCCATTCCTCGTTTAATACATTTCAATTACTTTTA                                                    ]
[-] EMBL CD140492             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGGAATAATTATTTTGGAGAGGAACTTGTTCAGAAATTAAAGTCAATTATGGATCATTCTGAAAGAAAACTGTATGTACTTATGGAGCGTATACAACCATATATTTTTCAAAACTCTATATTGAATTCAACTTCAGCTTCTGAAGAATTGAAAGTCAAGAAAATGGTTACAGAGTTGGGTATTTTTGGTGCAATTCTTGCGTGTAAAGATGAAATCTTCCTAAATGAATTTTCTGGTCACCTTCTTCGATCAAAACCACTGGAATCGAATGAAGGTGGAATAGTAGCAGGTTACGGTTGCCTTGATTCTCCATTCCTCGTTTAATACATTTCAATTACTTTTA                                                    ]




>consensus_8599#0
AGCCATAATTCGGCACGACGTTTNGTGATGGCGGAGACAAGATTTCTATTTCAGGTAGGT
TATTTTAATGGAGTTTCATTCTCTGAACTGGATAGTTTGATCGCGTTTAATCCTGTCAAA
ATGAATATGCAGATAATGACAGAATAAAGGTCAACAATAATTAACCAAAACCAAGTTTGA
CGGGACATGCTATCAGTAGGTTATGTGCGGAAAAGTTCGAATATTTCACTTCTACCTGAA
GTCTGTACTAATGATGTTGTTCTATAGATCAATGAAAACTCCACCATTAAACTATTCAGG
TCAAAAAATAAAGAAAAACTTTAAACTCAGGTTCCCATCACGCTCCTATTGACAGGTCTT
CAGTGTGCATTGTAGATGTGTCTCTTTCACATGGAATGTAAAATATCAACTTGAACAGTC
GTTAGCTATCAAATGCCCATGTATACAATATATGCTTGCCAATACAAAAATTGTACAGGC
CGCCCTATCAAAACCGAAATATTTATCCAGATTTTTTAAACCGGATAGTTCAAGTTATTT
GAATATTTTATCTACATTTGCTCATCAATATACATTAGACGAAGAAATGGGAATATCTGA
TTCCGCTGAAATTCAATATGCCATTAACGATTGTCTATTAAGACCAGATAATTATGTTTT
GAAACCACAGAGAGAAGGTGGAGGGAATAATTATTTTGGAGAGGAACTTGTTCAGAAATT
AAAGTCAATTATGGATCATTCTGAAAGAAAACTGTATGTACTTATGGAGCGTATACAACC
ATATATTTTTCAAAATTCTATATTGAATTCAACTTCAGCTTCTGAAGAATTGAAAGTCAA
GAAAATGGTTACAGAGTTGGGTATTTTTGGTGCAATTCTTGCGTGTAAAGATGAAATCTT
CCTAAATGAATTTTCTGGTCACCTTCTTCGATCAAAACCACTGGAATCGAATGAAGGTGG
AATAGTAGCAGGTTACGGTTGCCTTGATTCTCCATTCCTCGTTTAATACATTTCAATTAC
TTTTATGTTGCTCAGTAAATAACAATTAAACTATTTTAAAATATATATTATTC

consensusID : consensus_8599#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 215
fasta sequence

                              [ATTTTTGGTGCAATTCTTGCGTGTAAAAATGAAATCTTCCTAAATGAATTTTCTGGTCACCTTGTTCGATCAAAACCACTGGAATGGAATGAAGGTGGAATAGTAGCAGGTTACGGTTGCCTTGATTTTCCATTCCTCGTTTAAAACACTTCAAATAATTTTATGGTGGTTCAGTAAAATAGCAATTAAAACTATTTTTAAAAAATATATTATTC]

[-] EMBL CD077300             [ATTTTTGGTGCAATTCTTGCGTGTAAAAATGAAATCTTCCTAAATGAATTTTCTGGTCACCTTGTTCGATCAAAACCACTGGAATGGAATGAAGGTGGAATAGTAGCAGGTTACGGTTGCCTTGATTTTCCATTCCTCGTTTAAAACACTTCAAATAATTTTATGGTGGTTCAGTAAAATAGCAATTAAAACTATTTTTAAAAAATATATTATTC]




>consensus_8599#1
ATTTTTGGTGCAATTCTTGCGTGTAAAAATGAAATCTTCCTAAATGAATTTTCTGGTCAC
CTTGTTCGATCAAAACCACTGGAATGGAATGAAGGTGGAATAGTAGCAGGTTACGGTTGC
CTTGATTTTCCATTCCTCGTTTAAAACACTTCAAATAATTTTATGGTGGTTCAGTAAAAT
AGCAATTAAAACTATTTTTAAAAAATATATTATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8599#0      AGCCATAATTCGGCACGACGTTTNGTGATGGCGGAGACAAGATTTCTATTTCAGGTAGGT 60
consensus_8599#1      ------------------------------------------------------------
                                                                                  

consensus_8599#0      TATTTTAATGGAGTTTCATTCTCTGAACTGGATAGTTTGATCGCGTTTAATCCTGTCAAA 120
consensus_8599#1      ------------------------------------------------------------
                                                                                  

consensus_8599#0      ATGAATATGCAGATAATGACAGAATAAAGGTCAACAATAATTAACCAAAACCAAGTTTGA 180
consensus_8599#1      ------------------------------------------------------------
                                                                                  

consensus_8599#0      CGGGACATGCTATCAGTAGGTTATGTGCGGAAAAGTTCGAATATTTCACTTCTACCTGAA 240
consensus_8599#1      ------------------------------------------------------------
                                                                                  

consensus_8599#0      GTCTGTACTAATGATGTTGTTCTATAGATCAATGAAAACTCCACCATTAAACTATTCAGG 300
consensus_8599#1      ------------------------------------------------------------
                                                                                  

consensus_8599#0      TCAAAAAATAAAGAAAAACTTTAAACTCAGGTTCCCATCACGCTCCTATTGACAGGTCTT 360
consensus_8599#1      ------------------------------------------------------------
                                                                                  

consensus_8599#0      CAGTGTGCATTGTAGATGTGTCTCTTTCACATGGAATGTAAAATATCAACTTGAACAGTC 420
consensus_8599#1      ------------------------------------------------------------
                                                                                  

consensus_8599#0      GTTAGCTATCAAATGCCCATGTATACAATATATGCTTGCCAATACAAAAATTGTACAGGC 480
consensus_8599#1      ------------------------------------------------------------
                                                                                  

consensus_8599#0      CGCCCTATCAAAACCGAAATATTTATCCAGATTTTTTAAACCGGATAGTTCAAGTTATTT 540
consensus_8599#1      ------------------------------------------------------------
                                                                                  

consensus_8599#0      GAATATTTTATCTACATTTGCTCATCAATATACATTAGACGAAGAAATGGGAATATCTGA 600
consensus_8599#1      ------------------------------------------------------------
                                                                                  

consensus_8599#0      TTCCGCTGAAATTCAATATGCCATTAACGATTGTCTATTAAGACCAGATAATTATGTTTT 660
consensus_8599#1      ------------------------------------------------------------
                                                                                  

consensus_8599#0      GAAACCACAGAGAGAAGGTGGAGGGAATAATTATTTTGGAGAGGAACTTGTTCAGAAATT 720
consensus_8599#1      ------------------------------------------------------------
                                                                                  

consensus_8599#0      AAAGTCAATTATGGATCATTCTGAAAGAAAACTGTATGTACTTATGGAGCGTATACAACC 780
consensus_8599#1      ------------------------------------------------------------
                                                                                  

consensus_8599#0      ATATATTTTTCAAAATTCTATATTGAATTCAACTTCAGCTTCTGAAGAATTGAAAGTCAA 840
consensus_8599#1      ------------------------------------------------------------
                                                                                  

consensus_8599#0      GAAAATGGTTACAGAGTTGGGTATTTTTGGTGCAATTCTTGCGTGTAAAGATGAAATCTT 900
consensus_8599#1      ----------------------ATTTTTGGTGCAATTCTTGCGTGTAAAAATGAAATCTT 38
                                            *************************** **********

consensus_8599#0      CCTAAATGAATTTTCTGGTCACCTTCTTCGATCAAAACCACTGGAATCGAATGAAGGTGG 960
consensus_8599#1      CCTAAATGAATTTTCTGGTCACCTTGTTCGATCAAAACCACTGGAATGGAATGAAGGTGG 98
                      ************************* ********************* ************

consensus_8599#0      AATAGTAGCAGGTTACGGTTGCCTTGATTCTCCATTCCTCGTTTAATACATTTCAATTAC 1020
consensus_8599#1      AATAGTAGCAGGTTACGGTTGCCTTGATTTTCCATTCCTCGTTTAAAACACTTCAAATAA 158
                      ***************************** **************** *** ***** ** 

consensus_8599#0      TTTTATGTTG-CTCAGTAAA-TAACAATTAAA-CTATTTT-AAAATATATATTATTC 1073
consensus_8599#1      TTTTATGGTGGTTCAGTAAAATAGCAATTAAAACTATTTTTAAAAAATATATTATTC 215
                      ******* **  ******** ** ******** ******* **** ***********