These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8602#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence [TCATGTGTGTTTAAAATGGATTTTAGTAATTTGCACTGCTTTGTCGGCAAGGGTATGATTTCTACTGCCTCCTCTGCTACCATCAATACAAATACCAGTGAACAAGATTGTAAAATTGGTCAACAGCAATATCAGCAACAACAGTTGTTCCGTCAAAATACTCCTTATAATTTTAGTTCCTGGGATTGGAATGCTGTGAATATCATTAATAATAATAATAATAATAATAATAATAATAATAATGTTAACGGGACTCAACAACCAATTTGCAAACCTTTATTTCCTGAAAACGACGTCATGAAGATGATCAACTTTATAAAACAGGAAAATTATGCTCCTACAATGATTAATCCAGCCAGCTTCAGTCATGAAAATAATAATAAACAAAGGTTTGTACGGGAAACTCAACCATCATTGGATAAATTAATTGAAATGGGTTATCCGAATCAGCATTGCCCTTATCCTTTAGATCATTTGCATTCACAATTTCAATTCAATCAAAGTAGATGCCCATCAACTACAACA] [+] EMBL AI067567 [TCATGTGTGTTTAAAATGGATTTTAGTAATTTGCACTGCTTTGTCGGCAAGGGTATGATTTCTACTGCCTCCTCTGCTACCATCAATACAAATACCAGTGAACAAGATTGTAAAATTGGTCAACAGCAATATCAGCAACAACAGTTGTTCCGTCAAAATACTCCTTATAATTTTAGTTCCTGGGATTGGAATGCTGTGAATATCATTAATAATAATAATAATAATAATAATAATAATAATAATGTTAACGGGACTCAACAACCAATTTGCAAACCTTTATTTCCTGAAAACGACGTCATGAAGATGATCAACTTTATAAAACAGGAAAATTATGCTCCTACAATGATTAATCCAGCCAGCTTCAGTCATGAAAATAATAATAAACAAAGGTTTGTACGGGAAACTCAACCATCATTGGATAAATTAATTGAAATGGGTTATCCGAATCAGCATTGCCCTTATCCTTTAGATCATTTGCATTCACAATTTCAATTCAATCAAAGTAGATGCCCATCAACTACAACA] consensusID : consensus_8602#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 481 fasta sequence [GNATGTGCAAATAGTAGGTACTGCAATTAAATTGTAAGTTGTTGTTCTCATGTGTATACCTAGAGGAATAGGTCTCCTAGTGCTTGTTTACGAGTCTGTTACTTATCACCTATCCTAAAAATGGGCTTCATTGTTTGCTATGTATATTAGTACAAGGAATATCGACTAGAATTCCATCCGTATAGTCTCCTGACTTTTGTTTGAATTTTGATTTAGAGTATAAAAGTGCTTACTGTGTAGCTCGGCACAGAGCATGATTTGTCTAAATATCACTTCATCTTGGTTATTTTTTAAACAGTTGATTGACTTGTAACAATTCTAAGTACAGTCGCTTTTAAACATTTCTGCATTTTATCTCAAGTTCAAACCGATCGCTTCCACAACAGTCAAGCCAAGTCAGCGACCTCGTTATGTTTTACCACCGGATATAAACACTTTTGCATCTAACACTCCGACCAGCGTTACCAACATACCTACCTAT] [+] EMBL CD127547 [GNATGTGCAAATAGTAGGTACTGCAATTAAATTGTAAGTTGTTGTTCTCATGTGTATACCTAGAGGAATAGGTCTCCTAGTGCTTGTTTACGAGTCTGTTACTTATCACCTATCCTAAAAATGGGCTTCATTGTTTGCTATGTATATTAGTACAAGGAATATCGACTAGAATTCCATCCGTATAGTCTCCTGACTTTTGTTTGAATTTTGATTTAGAGTATAAAAGTGCTTACTGTGTAGCTCGGCACAGAGCATGATTTGTCTAAATATCACTTCATCTTGGTTATTTTTTAAACAGTTGATTGACTTGTAACAATTCTAAGTACAGTCGCTTTTAAACATTTCTGCATTTTATCTCAAGTTCAAACCGATCGCTTCCACAACAGTCAAGCCAAGTCAGCGACCTCGTTATGTTTTACCACCGGATATAAACACTTTTGCATCTAACACTCCGACCAGCG ] [+] EMBL CD127081 [ TAGCTCGGCACACATCCTGACTTGCCTAAATATCACTTCATCTTGGTTATTTTTTAAACAGTTGATTGACTTGTAACAATTCTAAGTACAGGCGCTTTTAAACATTTCTGCATTTTATCTCAAGGTCAAACCGATCGCTTCCACAACAGTCAAGCCAAGTCAGCGACCTCGTTATGTTTTACCACCGGATATAAACACTTTTGCATCTAACACTCCGACCAGCGTTACCAACATACCTACCTAT] consensusID : consensus_8602#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 452 fasta sequence [GTGATACTAACTAACAAACAAAACTTAAACAAATGGAGGAGTAAAAGAATTTACTGCTTATGACTCTCTGTTGAATGTCGGGTGTGTAAACCGATTAGAACAACACATGTAAGCGAACAATTGTTTTCAATTAGATCATCATCAGGTTTTACTCTAATTAGCTACATTCCATGATTACTTTTTAATCAATTCATATAGACTTATTGCAAGTTTATTTTTTAGATATCAGTGTTTGTTTAAACGCAACTTTCTTGATTTTAGAGGAAAATTATGCTCCTACAATGATTAATCCAGCCAGCTTCAGTCATGAAAATAATAATAAACAAAGGTTTGTATGGGAAACTCAACCATCATTGGATAAATTAATTGAAATGGGTTATCCGAATCAGCATTGCCCTTATCCTGTAGATCATTTGCATTCACAATTTCAATTCAATCAAAGTATGATGCCC] [-] EMBL CD059467 [GTGATACTAACTAACAAACAAAACTTAAACAAATGGAGGAGTAAAAGAATTTACTGCTTATGACTCTCTGTTGAATGTCGGGTGTGTAAACCGATTAGAACAACACATGTAAGCGAACAATTGTTTTCAATTAGATCATCATCAGGTTTTACTCTAATTAGCTACATTCCATGATTACTTTTTAATCAATTCATATAGACTTATTGCAAGTTTATTTTTTAGATATCAGTGTTTGTTTAAACGCAACTTTCTTGATTTTAGAGGAAAATTATGCTCCTACAATGATTAATCCAGCCAGCTTCAGTCATGAAAATAATAATAAACAAAGGTTTGTATGGGAAACTCAACCATCATTGGATAAATTAATTGAAATGGGTTATCCGAATCAGCATTGCCCTTATCCTGTAGATCATTTGCATTCACAATTTCAATTCAATCAAAGTATGATGCCC] [+] EMBL CD153126 [ TGTGTAAACCGATTAGAACAACACATGTAAGCGAACAATTGTTTTCAATTAGATCATCATCAGGTTTTACTCTAATTAGCTACATTCCATGATTACTTTTTAATCAATTCATATAGACTTATTGCAAGTTTATTTTTTAGATATCAGTGTTTGTTTAAACGCAACTTTCTTGATTTTAGAGGAAAATTATGCTCCTACAATGATTAATCCAGCCAGCTTCAGTCATGAAAATAATAATAAACAAAGGTTTGTACGGGAAACTCAACCATCATTGGATAAATTAATTGAAATGGGTTATCCGAATCAGCATTGCCCTTATCCTTTAGATCATTTGCATTCACAATTTCAATTCAATCAAAGTA GATGC ] consensusID : consensus_8602#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 424 fasta sequence [TGATGACGATCTAATTGAAAACGATTGTTCGCTTACATGTGTTGTTCTAGATAAAATTTAAATTTCTCAGTTTAAGAAGTTGTAAGGATTTACGAAAATGTTTACATGTTAACTTGGCTTTAAACTAAACATCCACTCTGAACTGTGAGTGGAGGCATTAATCAATTAAAGATGAGAGCATCTATTTACACCTTGTCGTAATTATGTAAATGGTTTTTTTGAAAACAATCTATTTTCTAAGAGGATCATTTTCGAGTATTTGAAAATTTCACTGCAATTAAATTGTAAGTTGTTGTTCTCATGTGTATACCTAGAGGAATAGGTCTCCTAGTGCTTGTTTACGAGTCTGTTACTTATCACTCATCCTAAAAATGGGCTTCATTGTTTGCTATGTATATTAGTACAAGGAATATCGACTAGAATT] [+] EMBL CD122027 [TGATGACGATCTAATTGAAAACGATTGTTCGCTTACATGTGTTGTTCTAGATAAAATTTAAATTTCTCAGTTTAAGAAGTTGTAAGGATTTACGAAAATGTTTACATGTTAACTTGGCTTTAAACTAAACATCCACTCTGAACTGTGAGTGGAGGCATTAATCAATTAAAGATGAGAGCATCTATTTACACCTTGTCGTAATTATGTAAATGGTTTTTTTGAAAACAATCTATTTTCTAAGAGGATCATTTTCGAGTATTTGAAAATTTCACTGCAATTAAATTGTAAGTTGTTGTTCTCATGTGTATACCTAGAGGAATAGGTCTCCTAGTGCTTGTTTACGAGTCTGTTACTTATCACTCATCCTAAAAATGGGCTTCATTGTTTGCTATGTATATTAGTACAAGGAATATCGACTAGAATT] [+] EMBL CD121837 [TGATGACGATCTAATTGAAAACGATTGTTCGCTTACATGTGTTGTTCTAGATAAAATTTAAATTTCTCAGTTTAAGAAGTTGTAAGGATTTACGAAAATGTTTACATGTTAACTTGGCTTTAAACTAAACATCCACTCTGAACTGTGAGTGGAGGCATTAATCAATTAAAGATGAGAGCATCTATTTACACCTTGTCGTAATTATGTAAATGGTTTTTTTGAAAACAATCTATTTTCTAAGAGGATCATTTTCGAGTATTTGAAAATTTCACTGCAATTAAATTGTAAGTTGTTGTTCTCATGTGTATACCTAGAGGAATAGGTCTCCTAGTGCTTGTTTACGAGTCTGTTACTTATCACCTATTCTAAAAATGGGCTTCATTGTTTGCTATGTATATTAGTACAAGGAATATCGACTAGAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8602#1 ------------------------------------------GNATGTGCAAATAGTAGG 18 consensus_8602#3 -----------------------------------------------------------T 1 consensus_8602#0 TCATGTGTGTTTAAAATGGATTTTAGTAATTTGCACTGCTTTGTCGGCAAGGGTATGATT 60 consensus_8602#2 ----------------------------------------------------------GT 2 consensus_8602#1 TACTGCAATTAAATTGTAAGTTGTTGTTCTCATGTGTATACCTAGAGGAATAGGTCTCCT 78 consensus_8602#3 GATGACGATCTAATTGAAAACGATTGTTCGCTTACATGTGTTGTTCTAGATAAAATTTAA 61 consensus_8602#0 TCTACTGCCTCCTCTGCTACCATCAATACAAATACCAGTGAACAAGATTGTAAAATTGGT 120 consensus_8602#2 GATACTAACTAACAAACAAAACTTAA-ACAAATGGAGGAGTAAAAGAATTTACTGCTTAT 61 * * * ** * consensus_8602#1 AGTGCTT-GTTTACGAGTCTGTTA---------CTTATCACCTATCCTAAAAATGGGCTT 128 consensus_8602#3 ATTTCTCAGTTTAAGAAGTTGTAAG------GATTTACGAAAATGTTTACATGTTAACTT 115 consensus_8602#0 CAACAGCAATATCAGCAACAACAGT-TGTTCCG-TCAAAATACTCCTTATAATTTTAGTT 178 consensus_8602#2 GACTCTCTGT-TGAATGTCGGGTGTGTAAACCGATTAGAACAACACATGTAAGCGAA--C 118 * * * * * * * consensus_8602#1 CATTGTTTGCTATGTATATTAGTACAAGGAATATCGACTAGAAT--TCCATCCGTATAGT 186 consensus_8602#3 GGCTTTAAACTAAACATCC----ACTCTGAACTGTGAGTGGAGGCATTAATCAATTAAAG 171 consensus_8602#0 CCTGGGATTGGAATGCTGTGAATATCATTAATAATAATAATAAT----AATAATAATAAT 234 consensus_8602#2 AATTGTTTTCAATTA----GATCATCATCAGGTTTTACTCTAAT----TAGCTACATTCC 170 * * * * * * consensus_8602#1 CTCCTGACTTTTGTTTGAATTTTGATTTAGAGTATAAAAGTGCTTACTGTGTAGCTCGGC 246 consensus_8602#3 ATGAGAGCATCTATTTACACCTTGTCGTA-ATTATGTAAATGGTTTTTTTGAAA------ 224 consensus_8602#0 AATAATAATGTTAACGGGACTCA-ACAACCAATTTGCAAACCTTTATTTCCTGA------ 287 consensus_8602#2 ATGATTACTTTTTAATCAATTCATATAGACTTATTGCAAGTTTAT-TTTTTAGA------ 223 * * * ** * * consensus_8602#1 ACAGAGCATGA-TTTGTCTAAATATCACTTCATCTTGGTTATTTTTTAAACAGTTG-ATT 304 consensus_8602#3 --ACAATCTAT-TTTCTAAGAGGATCATTTTCGAGTATTTGAAAATTTCACTGC-A-ATT 279 consensus_8602#0 AAACGACGTCA---TGAAGATGATCAACTTTATAAAACAGGAAAATTATGCTCCTACAAT 344 consensus_8602#2 TATCAGTGTTTGTTTAAACGCAACTTTCTTGATTTTAGAGGAAAATTATGCTCCTACAAT 283 * * ** ** * * * consensus_8602#1 GACTTGT--AA-CAATTCTAAGTACAGTCGCTTTTAAACATTTCTGCATTTTATCTCAAG 361 consensus_8602#3 AAATTGT--AAGTTGTTGTTCTCATGTGTATACCTAGAGGAATAGGTCTCCTAGTGCTTG 337 consensus_8602#0 GATTAATCCAGCCAGCTTCAGTCATGAAAATAATAATAAACAAAGGT-TTGTACGGGAAA 403 consensus_8602#2 GATTAATCCAGCCAGCTTCAGTCATGAAAATAATAATAAACAAAGGT-TTGTATGGGAAA 342 * * * * * * * * * * ** consensus_8602#1 TTCAAACCGATCGCTTCCACAACAGTCAAGCCAAGTCAGCGACCTCGTTATGTTTTACCA 421 consensus_8602#3 TTTA--CGAGTCTGTTACTTATCACTCATCCTAAA-----------AATGGGCTTCATTG 384 consensus_8602#0 CTCA-----ACCATCATTGGATAAATTAATTGAAATGGGTTATCCGAATCAGCATTGCCC 458 consensus_8602#2 CTCA-----ACCATCATTGGATAAATTAATTGAAATGGGTTATCCGAATCAGCATTGCCC 397 * * * * * * * ** * * * consensus_8602#1 CCGGATATAAACACTTTTGCATCTAACACTCCGACCAGCGTTACCAA-CATACCTACCTA 480 consensus_8602#3 TTTGCTATGTATATTAGTACAAGGAATAT--CGACTAGAATT------------------ 424 consensus_8602#0 TTATCCTTTAGATCATTTGCATTCACAATTTCAATTCAATCAAAGTA-GATGCCCATCAA 517 consensus_8602#2 TTATCCTGTAGATCATTTGCATTCACAATTTCAATTCAATCAAAGTATGATGCCC----- 452 * ** * * * * consensus_8602#1 T------- 481 consensus_8602#3 -------- consensus_8602#0 CTACAACA 525 consensus_8602#2 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||