cluster # 8605

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Schistosoma mansoni
cluster # 8605 cluster # 8605 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8605#0 length = 881 sequences # 5

consensus_8605#1 length = 426 sequences # 2

consensusID : consensus_8605#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 881
fasta sequence

                              [GTTGTCCAAGACACTGAATTTTAACANTCTGACAGTTTACCACATCAATTGTGAAATCAAATGATCAAAGACCACACCAGTTTTCTTACAATTATCCATCATGATTGAATTAATTTTCCCCTTAATTTGAACTGTGCATTCATTACATTTATGAATGCAAACTGTTTGCTTTGTTTCAGTAGCAACAATTNGTAAATTTCCGGCAGACTGAAAATTTTCTACAATCCATCTGTTACCCCTTAGTTCCAAGCATCCAGCCCCCGACGACCCTTTCTCAGACGGTGGTCGGACAGTTGGATTACTCGATGGTGAGTTCTTTTGATCT-CGTGTTGTGTGCATAATAGG-TCCTTCACGAAGTTTGGGGTTTTTATGCGTTTTCATATCGTCAGTTACTTTGCGCAAATTAGATATCACTGCTGTTCCACGATTCAAATCAGCGAATAAAGCAGACTGTGGTGAATTATCGTCTGCTTGCAATGACATTGCAGCTAAATGAGCAGTTGTAAATACAGGGGGTGGTGGTGCAGAACAATTGGAATTGACTTCACGAGTAGGTGAAGACTTAGACAGCTTTGATGCTACAGCTGGTTTACCACGAGCATTCCAAACCAAACCAGTGGTATGATGTTTGTTAACATAAACTTGTAGTGCAGTCCAAACTGACATTAAAGATTTTTTCCAAGCACGATGAACTGTGTCGTTGTCTTTGTATTCCATAAGAATACGATTCATAAAGAATTCACCTGCTTCTTGCATGGTTTTAACGTATGTCGATGGTGCAGGAGTCTGAGTAGTCTAAACGCTTAAAAACAAAACTTACATCACTTAACCAGCCTAGAGCTGTCACAGACTCGGCCACAGCTGAAAGATGTTAAAAAAAT]

[-] EMBL AA629474             [GTTGTCCAAGACACTGAATTTTAACANTCTGACAGTTTACCACATCAATTGTGAAATCAAATGATCAAAGACCACACCAGTTTTCTTACAATTATCCATCATGATTGAATTAATTTTCCCCTTAATTTGAACTGTGCATTCATTACATTTATGAATGCAAACTGTTTGCTTTGTTTCAGTAGCAACAATTNGTAAATTTCCGGCAGACTGAAAATTTTCTACAATCCATCTGTTACCCCTTAGTTCCAAGCATCCAGCCCCCGACGACCCTTTCTCAGACGGTGGTCGGACAGTTGGATTACTCGATGGTGAGTTCTTTTGATCTCCGTGTTGTGTGCATAATAGGTTCNTTCACGAAGTTTGGGGTTTTTATGCGTTTTCATATCGTCAGTTACTTTGCGCAAATTAGATATCACTGNTGTTCCACGATTCAAATCAGCGAATAAAGCAGAC                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD083672             [                                                                                                                    TCCCCTTAATTTGAACTGTGCATTCATTACATTTATGAATGCAAACTGTTTGCTTTGTTTCAGTAGCAACAATTTGTAAATTTCCGGCAGACTGAAAATTTTCTACAATCCATCTGTTACCCCTTAGTTCCAAGCATCCAGCCCCCGACGACCCTTTCTCAGACGGTGGTCGGACAGTTGGATTACTCGATGGTGAGTTCTTTTGATCT CGTGTTGTGTGCATAATAGG TCCTTCACGAAGTTTGGGGTTTTTATGCGTTTTCATATCGTCAGTTACTTTGCGCAAATTAGATATCACTGCTGTTCCACGATTCAAATCAGCGAATAAAGCAGACTGTGGTGAATTATCGTCTGCTTGCAATGACATTGCAGCTAAATGAGCAGTTGTAAATACAGGGGGTGGTGGTGCAGAACAATTGGAATTGACTTCACGAGTAGGTGAAGACTTAGACAGCTTTGATGCTACAGCTGGTTTACCACGA CATTCCAAACCAAACCAGTGGTATG                                                                                                                                                                                                                                                                 ]
[+] EMBL CD091652             [                                                                                                                                                                                                                                                                                                                                                      TAGG TCCTTCACGAAGTTTGGGGTTTTTATGCGTTTTCATATCGTCAGTTACTTTGCGCAAATTAAATATCACTGCTGTTCCACGATTCAAATCAGCGAATAAAGCAGACTGTGGTGAATTATCGTCTGCTTGCAATGACATTGCAGCTAAATGAGCAGTTGTAAATACAGGGGGTGGTGGTGCAGAACAATTGGAATTGACTTCACGAGTAGGTGAAGACTTAGACAGCTTTGATGCTACAGCTGGTTTACCACGAGCATTCCAAACCAAACCAGTGGTATGATGTTTGTTAACATAAACTTGTAGTGCAGTCCAAACTGACATTAAAGATTTTTTCCAAGCACGATGAACTGTGTCGTTGTCTTTGTATTCCATAAGAATACGATTCATAAAGAATTCACCTGCTTCTTGCATGGTTTTAACGTATGTCGATGGTGCAGGAGTCTGAGTAGTCTAAACGCTTAAAAACAAAACTTACATCACTTAACCAGCCTAGAGCTGTCACAGACTCGGCCACAGCTGAAAGATGTTAAAAAAAT]
[+] EMBL CD091654             [                                                                                                                                                                                                                                                                                                                                                      TAGG TCCTTCACGAAGTTTGGGGTTTTTATGCGTTTTCATATCGTCAGTTACTTTGCGCAAATTAGATATCACTGCTGCTCCACGATTCAAATCAGCGAATAAAGCAGACTGTGGTGAATTATCGTCTGCTTGCAATGACATTGCAGCTAAATGAGCAGTTGTAAATACAGGGGGTGGTGGTGCAGAACAATTGGAATTGACTTCACGAGTAGGTGAAGACTTAGACAGCTTTGATGCTACAGCTGGTTTACCACGAGCATTCCAAACCAAACCAGTGGTATGATGTTTGTTAACATAAACTTGTAGTGCAGTCCAAACTGACATTAAAGATTTTTTCCAAGCACGATGAACTGTGTCGTTGTCTTTGTATTCCATAAGAc                                                                                                                                                               ]
[-] EMBL CD059516             [                                                                                                                                                                                                                                                                                                                                                      TAGG TCCTTCACGAAGTTTGGGGTTTTTATGCGTTTTCATATCGTCAGTTACTTTGCGCAAATTAGATATCACTGCTGTTCCACGATTCAAATCAGCGAATAAAGCAGACTGTGGTGAATTATCGTCTGCTTGCAATGACATTGCAGCTAAATGAGCAGTTGTAAATACAGGGGGTGGTGGTGCAGAACAATTGGAATTGACTTCACGAGTAGGTGAAGACTTAGACAGCTTTGATGCTACAGCTGGTTTACCACGAGCATTCCAAACCAAACCAGTGGTATG                                                                                                                                                                                                                                                                 ]




>consensus_8605#0
GTTGTCCAAGACACTGAATTTTAACANTCTGACAGTTTACCACATCAATTGTGAAATCAA
ATGATCAAAGACCACACCAGTTTTCTTACAATTATCCATCATGATTGAATTAATTTTCCC
CTTAATTTGAACTGTGCATTCATTACATTTATGAATGCAAACTGTTTGCTTTGTTTCAGT
AGCAACAATTNGTAAATTTCCGGCAGACTGAAAATTTTCTACAATCCATCTGTTACCCCT
TAGTTCCAAGCATCCAGCCCCCGACGACCCTTTCTCAGACGGTGGTCGGACAGTTGGATT
ACTCGATGGTGAGTTCTTTTGATCTCGTGTTGTGTGCATAATAGGTCCTTCACGAAGTTT
GGGGTTTTTATGCGTTTTCATATCGTCAGTTACTTTGCGCAAATTAGATATCACTGCTGT
TCCACGATTCAAATCAGCGAATAAAGCAGACTGTGGTGAATTATCGTCTGCTTGCAATGA
CATTGCAGCTAAATGAGCAGTTGTAAATACAGGGGGTGGTGGTGCAGAACAATTGGAATT
GACTTCACGAGTAGGTGAAGACTTAGACAGCTTTGATGCTACAGCTGGTTTACCACGAGC
ATTCCAAACCAAACCAGTGGTATGATGTTTGTTAACATAAACTTGTAGTGCAGTCCAAAC
TGACATTAAAGATTTTTTCCAAGCACGATGAACTGTGTCGTTGTCTTTGTATTCCATAAG
AATACGATTCATAAAGAATTCACCTGCTTCTTGCATGGTTTTAACGTATGTCGATGGTGC
AGGAGTCTGAGTAGTCTAAACGCTTAAAAACAAAACTTACATCACTTAACCAGCCTAGAG
CTGTCACAGACTCGGCCACAGCTGAAAGATGTTAAAAAAAT

consensusID : consensus_8605#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 426
fasta sequence

                              [TTTTTTCCAAGCACGATGAACTGTGTCGTTGTCTTTGTATTCCATAAGAATACGATTCATAAAGAATTCACCTGCTTCTTGCATGGTTTTAACGTATGTCGATGGTGCAGGAGTATCACTTAACCAGCCTAGAGCTGTCACAGACTCGGCCACAGCTGAAAGATGGTTAAAAAATTTACTGCTTCGATTATTATCCTTAAATTTGATAACTTCTTCTATTAGATTTCCCAATGGTGCTATAATAAGCTTTAGGTCCGAGTCAGAAGGTTTTGAGCATTCAGCTGCCAATTTGATTATCTCTTCTTGCATCAAAAAGCATTTTTTAACCATGGAGGCGTGATTTCCAACAATATCTCCAATTTCGAAACTATTAAGTAGGTATTCCGATAAGGGGCCATTGACTATTTCATGANATTCCTTGACTGA]

[+] EMBL CD181219             [TTTTTTCCAAGCACGATGAACTGTGTCGTTGTCTTTGTATTCCATAAGAATACGATTCATAAAGAATTCACCTGCTTCTTGCATGGTTTTAACGTATGTCGATGGTGCAGGAGTATCACTTAACCAGCCTAGAGCTGTCACAGACTCGGCCACAGCTGAAAGATGGTTAAAAAATTTACTGCTTCGATTATTATCCTTAAATTTGATAACTTCTTCTATTAGATTTCCCAATGGTGCTATAATAAGCTTTAGGTCCGAGTCAGAAGGTTTTG                                                                                                                                                          ]
[+] EMBL CD190595             [                                                                                         TAACGTATGTCGATGGTGCAGGAGTATCACTTAACCAGCCTAGAGCTGTCACAGACTCGGCCACAGCTGAAAGATGGTTAAAAAATTTACTGCTTCGATTATTATCCTTAAATTTGATAACTTCTTCTATTAGATTTCCCAATGGTGTTATAATAAGCTTTAGGTCCGAGTCAGAAGGTTTTGAGCATTCAGCTGCCAATTTGATTATCTCTTCTTGCATCAAAAAGCATTTTTTAACCATGGAGGCGTGATTTCCAACAATATCTCCAATTTCGAAACTATTAAGTAGGTATTCCGATAAGGGGCCATTGACTATTTCATGANATTCCTTGACTGA]




>consensus_8605#1
TTTTTTCCAAGCACGATGAACTGTGTCGTTGTCTTTGTATTCCATAAGAATACGATTCAT
AAAGAATTCACCTGCTTCTTGCATGGTTTTAACGTATGTCGATGGTGCAGGAGTATCACT
TAACCAGCCTAGAGCTGTCACAGACTCGGCCACAGCTGAAAGATGGTTAAAAAATTTACT
GCTTCGATTATTATCCTTAAATTTGATAACTTCTTCTATTAGATTTCCCAATGGTGCTAT
AATAAGCTTTAGGTCCGAGTCAGAAGGTTTTGAGCATTCAGCTGCCAATTTGATTATCTC
TTCTTGCATCAAAAAGCATTTTTTAACCATGGAGGCGTGATTTCCAACAATATCTCCAAT
TTCGAAACTATTAAGTAGGTATTCCGATAAGGGGCCATTGACTATTTCATGANATTCCTT
GACTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8605#0      GTTGTCCAAGACACTGAATTTTAACANTCTGACAGTTTACCACATCAATTGTGAAATCAA 60
consensus_8605#1      ------------------------------------------------------------
                                                                                  

consensus_8605#0      ATGATCAAAGACCACACCAGTTTTCTTACAATTATCCATCATGATTGAATTAATTTTCCC 120
consensus_8605#1      ------------------------------------------------------------
                                                                                  

consensus_8605#0      CTTAATTTGAACTGTGCATTCATTACATTTATGAATGCAAACTGTTTGCTTTGTTTCAGT 180
consensus_8605#1      -------------------------------------------------TTTTTTCCAAG 11
                                                                       *** ** **  

consensus_8605#0      AGCAACAATTNGTAAATTTCCGGCAGACTGAAAATTTTCTACAATCCATCTGTTACCCCT 240
consensus_8605#1      CACGATGAACTGTGTCGTTGTCTTTGTATTCCATAAGAATACGATTCATAAAGAATTCAC 71
                        * *  *   **    **      *  *   *      *** ** ***     *  *  

consensus_8605#0      TAGTTCCAAGCATCCAGCCCCCGACGACCCTTTCTCAGACGGTGGTCGGACAGTTGGATT 300
consensus_8605#1      CTGCTTCTTGCAT---GGTTTTAACG----TATGTC-GATGGTG--CAGGAGTATCACTT 121
                        * * *  ****   *      ***    * * ** ** ****  * *     *   **

consensus_8605#0      ACTCGATGGTGAGTTCTTTTGATCTCGTGTTGTGTGCATAATAGGTCCTTCACGAAGTTT 360
consensus_8605#1      AACCAGCCTAGAGCTGTCACAGACTCG-GCCACA-GC-TGAAAGATGGTT-AAAAAATTT 177
                      *  *      *** * *      **** *      ** * * ** *  ** *  ** ***

consensus_8605#0      GGGGTTTTTATGCGTTTTCATATCGTCAGTTACTTTGCGCAAATTAGATATCACTGCTGT 420
consensus_8605#1      ACTGCTTCGATTATTATCCTTAAATTTGATAACTT--CTTCTATTAGATTTCCCAATGGT 235
                         * **  **   * * * **   *   * ****  *    ******* ** *    **

consensus_8605#0      TCCACGATTCAAATCAGCGAATAAAGCAGACTGTGGTGAATTATCGTCTGC-----TTGC 475
consensus_8605#1      GCTATAATAAGCTTTAG-GTCCGAGTCAGAAGGTTTTGAGCATTCAGCTGCCAATTTGAT 294
                       * *  **     * ** *    *  ****  **  ***    **  ****     *   

consensus_8605#0      AATGACATTGCAGCTAAATGAGCAGTTGTAAATACAGGGGGTGGTGGTGCAGAACAATTG 535
consensus_8605#1      TATCTCTTCTTGCATCAAAAAGCATTTTTTAAC-CATGGAGGCGTGATTTCCAACAAT-A 352
                       **  * *      * **  **** ** * **  ** ** *  *** *    ******  

consensus_8605#0      GAATTGACTTCACGAGTAGGTGAAGACTTAGACAGCTTTGATGCTACAGCTGGTTTACCA 595
consensus_8605#1      TCTCCAATTTCGAAACTAT-TAAGTAGGTATTCCGATAAGGGGCCATTGACTATTT--CA 409
                            * ***   * **  * *  *  **  * * *  *  ** *  *    ***  **

consensus_8605#0      CGAGCATTCCAAACCAAACCAGTGGTATGATGTTTGTTAACATAAACTTGTAGTGCAGTC 655
consensus_8605#1      TGANATTCCTTGACTGA------------------------------------------- 426
                       **   * *   **  *                                           

consensus_8605#0      CAAACTGACATTAAAGATTTTTTCCAAGCACGATGAACTGTGTCGTTGTCTTTGTATTCC 715
consensus_8605#1      ------------------------------------------------------------
                                                                                  

consensus_8605#0      ATAAGAATACGATTCATAAAGAATTCACCTGCTTCTTGCATGGTTTTAACGTATGTCGAT 775
consensus_8605#1      ------------------------------------------------------------
                                                                                  

consensus_8605#0      GGTGCAGGAGTCTGAGTAGTCTAAACGCTTAAAAACAAAACTTACATCACTTAACCAGCC 835
consensus_8605#1      ------------------------------------------------------------
                                                                                  

consensus_8605#0      TAGAGCTGTCACAGACTCGGCCACAGCTGAAAGATGTTAAAAAAAT 881
consensus_8605#1      ----------------------------------------------