These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8627#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 641 fasta sequence [CCTGAGGTTGATTGGAATGTTTGAGATACCCTTATTAGAGCCCGTGATTCTGTCCGTTTCCTGTTGGCGATCAGCCACCAGATATCGAGACTCAAATCCGCAACATGATCATTGAATTTATAGAGAGAGATTCCTGTCTTATTTTGGCTGTTAGCCCTGCTAATTCGGACCTCGCTAATTCCGATGCCTTAAAACTTGCTAAGGAATATGACCCACAGGGTCTGCGTACTATCGGGGTATTAACAAAGTTAGATTTGATGGATGAAGGAACAGATGCACAGGAAATTCTTGAAAATAGATTGCTCCCATTAAGAAGAGGTTATATAGGCGTTGTCAACAGAAGCCAGCGAGATATAGATGGACGCAAAGATATCACTGCTGCTTTGGAAGCCGAACGTAGATTTTTCCTTTCACATCCCAGTTATCGTCATATGGCTGATCGTATGGGAACTCCTTATCTCCAACGTATACTTAATCAACAACTAACGAATCATATCCGTGATACTCTGCCGCATCTACGTAATCGGTTACAAACCCAACTAATTAGTTTGGAAAAAGAAGTTTCTGACTTTCGTAATTATCGTCCAGATGATCCAGCTTACAAAACAAAAGCATTGCTACAGTGATTAGTTCTTTTTTCT] [+] EMBL CD071618 [CCTGAGGTTGATTGGAATGTTTGAGATACCCTTATTAGAGCCCGTGATTCTGTCCGTTTCCTGTTGGCGATCAGCCACCAGATATCGAGACTCAAATCCGCAACATGATCATTGAATTTATAGAGAGAGATTCCTGTCTTATTTTGGCTGTTAGCCCTGCTAATTCGGACCTCGCTAATTCCGATGCCTTAAAACTTGCTAAGGAATATGACCCACAGGGTCTGCGTACTATCGGGGTATTAACAAAGTTAGATTTGATGGATGAAGGAACAGATGCACAGGAAATTCTTGAAAATAGATTGCTCCCATTAAGAAGAGGTTATATAGGCGTTGTCAACAGAAGCCAGCGAGATATAGATGGACGCAAAGATATCACTGCTGCTTTGGAAGCCGAACGTAGATTTTT ] [+] EMBL CD084435 [ gtagCTTATTTTGGCTGTTAGCCCTGCT ATTCGGACCTCGCTAATTCCGATGCCTTAAAACTTGCTAAGGAATATGACCCACAGGGTCTGCGTACTATCGGGGTATTAACAAAGTTAGATTTGATGGATGAAGGAACAGATGCACAGGAAATTCTTGAAAATAGATTGCTCCCATTAAGAAGAGGTTATATAGGCGTTGTCAACAGAAGCCAGCGAGATATAGATGGACGCAAAGATATCACTGCTGCTTTGGAAGCCGAACGTAGATTTTTCCTTTCACATCCCAGTTATCGTCATATGGCTGATCGTATGGGAACTCCTTATCTCCAACGTATACTTAATCAACAACTAACGAATCATATCCGTGATACTCTGCCGCATCTACGTAATCGGTTACAAACCCAACTAATTAGTTTGGAAAAAGAAGTTTCTGACTTTCGTAATTATCGTCCAGATGATCCAGCTTACAAAACAAAAGCATTGCTACAGTGATTAGTTCTTTTTTCT] [+] EMBL CD129531 [ ATATAGATGGACGCAAAGATATCACTGCTGCTTTGGAAGCCGAACGTAGATTTTTCCTTTCACATCCCAGTTATCGTCATATGGCTGATCGTATGGGAACTCCTTATCTCCAACGTATACTTAATCAACAACTAACGAATCATATCCGTGATACTCTGCCGCATCTACGTAATCGGTTACAAACCCAACTAATTAGTTTGG ] [+] EMBL CD066639 [ ATATAGATGGACGCAAAGATATCACTGCTGCTTTGGAAGCCGTACGTAGATTTTTCCTTTCACATCCCAGTTATCGTCATATGGCTGATCGTATGGGAACTCCTTATCTCCAACGTATACTTAATCAACAACTAACGAATCATATCCGTGATACTCTGCCGCATCTACGTAATCGGTTAC ] consensusID : consensus_8627#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 447 fasta sequence [GCTATACGAAGCTTCTGCAATTATAGTTAGTGCAAAATGTATGGAAATGAAGGGATGGAAAGGCTTATCCCTCTTGTTAATAAGCTTCAAGATGCTTTTGCTTCCCTAAACCTTCCGCTGAACCTTGATTTACCTCAGATTGCGGTTGTAGGAAGCCAAAGCGCTGGTAAAAGCTCAGTGCTGGAAAACTTTGTGGGGCGTGATTTCTTACCGAGAGGTAGTGGTATCGTTACAAGGAGACCGCTTATTCTTCAGCTGGTACATGATAAATCCGTTGAATATGGCGAATTTATTCACTGTAAAAATAAAAAGTTCACAGATTTCGATGATATCCGACGAGAAATTGAACAGGAAACGGACAGAATCACGGGCTCTAATAAGGGTATCTCAAACATTCCAATCAACCTCAGGATTCATTCCCCCAGCGTCCTTAATCTTACCCTTATT] [-] EMBL CD179119 [GCTATACGAAGCTTCTGCAATTATAGTTAGTGCAAAATGTATGGAAATGAAGGGATGGAAAGGCTTATCCCTCTTGTTAATAAGCTTCAAGATGCTTTTGCTTCCCTAAACCTTCCGCTGAACCTTGATTTACCTCAGATTGCGGTTGTAGGAAGCCAAAGCGCTGGTAAAAGCTCAGTGCTGGAAAACTTTGTGGGGCGTGATTTCTTACCGAGAGGTAGTGGTATCGTTACAAGGAGACCGCTTATTCTTCAGCTGGTACATGATAAATCCGTTGAATATGGCGAATTTATTCACTGTAAAAATAAAAAGTTCACAGATTTCGATGATATCCGACGAGAAATTGAACAGGAAACGGACAGAATCACGGGCTCTAATAAGGGTATCTCAAACATTCCAATCAACCTCAGGATTCATTCCCCCAGCGTCCTTAATCTTAC ] [+] EMBL CD178352 [ TGGAAGGGCTTATCCCTCTTGTTAATAAGCTTCAAGATGCTTTTGCTTCCCTAAACCTTCCGCTGAACCTTGATTTACCTCAGATTGCGGTTGTAGGAAGCCAAAGCGCTGGTAAAAGCTCAGTGCTGGAAAACTTTGTGGGGCGTGATTTCTTACCGAGAGGTAGTGGTATCGTTACAAGGAGACCGCTTATTCTTCAGCTGGTACATGATAAATCCGTTGAATATGGCGAATTTATTCACTGTAAAAATAAAAAGTTCACAGATTTCGATGATATCCGACGAGAAATTGAACAGGAAACGGACAGAATCACGGGCTCTAATAAGGGTATCTCAAACATTCCAATCAACCTCAGGATTCATTCCCCCAGCGTCCTTAATCTTACCCTTATT] [+] EMBL CD155568 [ TCTTCAGCTGGTACATGATAAATCCGTTGAATATGGCGAATTTATTCACTGTAAAAATAAAAAGTTCACAGATTTCGATGATATCCGACGAGAAATTGAACAGGAAACGGACAGAATCACGGGCTCTAATAAGGGTATCTCAAACATTCCAATCAACCTCAGGATTCATTCCCCCAGCGTCCTTAATCTTACC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8627#0 CCTGAGGTTGATTGGAATGTTTGAGATACCCTTATTAGAGCCCGTGATTCTGTCCGTTTC 60 consensus_8627#1 ------------------------------------------------------------ consensus_8627#0 CTGTTGGCGATCAGCCACCAGATAT-CGAGACTCAAATCCGCAAC-ATGATCATTGAATT 118 consensus_8627#1 --------------------GCTATACGAAGCT----TCTGCAATTATAGTTAGTGCAAA 36 * *** *** ** ** **** ** * * ** * consensus_8627#0 TATAGAGAGAGATTCCTGTCTTATTTTGGCTGTTAGCCCTGCTAATTCGGACCTCGCTAA 178 consensus_8627#1 -ATGTATGGAAATGAAGGGATGGAAAGGCTTATCCCTCTTGTTAATAAGCTTCAAGATGC 95 ** * ** ** * * * * * * ** **** * * * * consensus_8627#0 TTCCGATGCCTTAAAACTTGCTAAGGAATATGACCCACAG-GGTCTGCGTACTATCGGGG 237 consensus_8627#1 TTTTGCTTCCCTAAACCTTCCGCTGAACCTTGATTTACCTCAGATTGCG-GTTGTAGGAA 154 ** * * ** **** *** * * * *** ** * **** * * ** consensus_8627#0 TATTAACAA--AGTTAGATTTGATGGATGAAGGAACAGATGCACAGGAAATTCTTGAAAA 295 consensus_8627#1 GCCAAAGCGCTGGTAAAAGCTCAGTGCTGGAAAACTTTGTGGGGCGTGATTTCTTACCGA 214 ** ** * * * * * ** * * ** * * ***** * consensus_8627#0 TAGAT--TGCTCCCATTAAGAAGAGGTTATATAGGCGTTGTCAACAGAAGCCAGCGAGAT 353 consensus_8627#1 GAGGTAGTGGTATCGTTACAAGGAGACCGCTTAT---TCTTCAGCTGGTACATGATAAAT 271 ** * ** * * *** * *** ** * *** * * * * * ** consensus_8627#0 ATAGATGGACGCAAAGATATCACTGCTGCTTTGGAAGCCGAACGTAGATTT-TTCCTTTC 412 consensus_8627#1 CC-GTTGAATATGGCGAATTTATT--CACTGTAAAAATAAAAAGTTCACAGATTTCGATG 328 * ** * ** * * * ** * ** ** ** * ** * * consensus_8627#0 ACATCCCAGTTATCGTCATATGGCTGATCGTATGGGAACTCCTTATCTCCAACGTATACT 472 consensus_8627#1 ATATCCGACGAGAAATTGAACAGG-AAACGGACAGAATCACGGGCTCTAATAAGGGTATC 387 * **** * * * * * ** * * * * * *** * * ** consensus_8627#0 TAATCAACAACTAACGAATCATATCCGTGATACTCTGCCGCATC-TACGTAATCGGTTAC 531 consensus_8627#1 TCA-----AACATTCCAATCAACCTCAGGATTCATTCCCCCAGCGTCCTTAATC--TTAC 440 * * *** * ***** * *** * * ** ** * * * ***** **** consensus_8627#0 AAACCCAACTAATTAGTTTGGAAAAAGAAGTTTCTGACTTTCGTAATTATCGTCCAGATG 591 consensus_8627#1 ---CCTTATT-------------------------------------------------- 447 ** * * consensus_8627#0 ATCCAGCTTACAAAACAAAAGCATTGCTACAGTGATTAGTTCTTTTTTCT 641 consensus_8627#1 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||