These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8628#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 696 fasta sequence [CTCCAGGCCAANAATTTGGCACGAGGCGATATGGGCGATTATGCTGAAGCAGAGGGTATCGCTCTGAAACGCTTAGCAGAGGAACGAAAAGCATGGCGAAAAGATCATCCCTTCGTATGTAAACCAACTAATTATATCATGCCCTAAGGGTTTTGTAGCCAAGCCCATGAAGAACCCTGATGGGTCGTTAGACCTGATGACTTGGAATTGTAGTATACCTGGGAAAAAAGGCGTAAGATCCATAGTATACTCTTTTTAAAGCTATTTA-ACATTGTGGGAGGGAGGATTGTTCAGTCTTAGAATGTACTTCAAGCCGGAATATCCAACAACACCTCCCAAATGCAAGTTTGAGCCACCTTTATTCCATCCCAATGTATTTCCGTCTGGTACCGTGTGTCTTTCCCTCTTGGATGAAGAAAAACATTGGAGACCGGTAGTTACAATCAAACAAGTATCTAAAGAAACTCCTTTTTAACATGCTATAAGATTCTCTTAGGTATTCAAGATTTATTAGATCACCCAAATCCCAAAGATCCTGCTCAAGCTGACGCCTATACATTATATATACAAAACAGAAAAGAATACGACAGTCGGGTTAAAAAGCAGGCCGAGTCTTTTCGAAATCCCAACTTGTAATTNTCTACATTTCATCTCAAGATATAAGATAAACCATAT-ATTGTAAATATAAGACANACC] [+] EMBL CD081070 [CTCCAGGCCAANAATTTGGCACGAGGCGATATGGGCGATTATGCTGAAGCAGAGGGTATCGCTCTGAAACGCTTAGCAGAGGAACGAAAAGCATGGCGAAAAGATCATCCCTTCGTATGTAAACCAACTAATTATATCATGCCCTAAGGGTTTTGTAGCCAAGCCCATGAAGAACCCTGATGGGTCGTTAGACCTGATGACTTGGAATTGTAGTATACCTGGGAAAAAAGGCGTAAGATCCATAGTATACTCTTTTTAAAGCTATTTA ACATTGTGGGAGGGAGGATTGTTCAGTCTTAGAATGTACTTCAAGCCGGAATATCCAACAACACCTCCCAAATGCAAGTTTGAGCCACCTTTATTCCATCCCAATGTATTTCCGTCTGGTACCGTGTGTCTTTCCCTCTTGGATGAAGAAAAACATTGGAGACCGGTAGTTACAATCAAACAAGTATCTAAAGAAACTCCTTTTTAACATGCTATAAGATTCTCTTAGGTATTCAAGATTTATTAGATCACCCAAATCCCAAAGATCCTGCTCAAGCTGACGCCTATACATTATATATACAAAACAGAAAAGAATACGACAGTCGGGTTAAAAAGCAGGCCGAGTCTTTTCGAAATCCCAACTTGTAATTNTCTACATTTCATCTCAAGATATAAGATAAACCATAT ATTGTAAATATAAGACANAC ] [-] EMBL CD074892 [ AGCAGAGGGTATCGCTCTGAAACGCTTAGCAGAGGAACGAAAAGCATGGCGAAAAGATCATCCCTTCGTATGTAAACCAACTAATTATATCATGCCCTAAGGGTTTTGTAGCCAAGCCCATGAAGAACCCTGATGGGTCGTTAGACCTGATGACTTGGAATTGTAGTATACCTGGGAAAAAAGGCGTAAGATCCATAGTATACTCTTTTTAAAGCTATTTAGACATTGTGGGAGGGAGGATTGTTCAGTCTTAGAATGTACTTCAAGCCGGAATATCCAACAACACCTCCCAAATGCAAGTTTGAGCCACCTTTATTCCATCCCAATGTATTTCCGTCTGGTACCGTGTGTCTTTCCCTCTTGGATGAAGAAAAACATTGGAGACCGGTAGTTACAATCAAACAAGTATCTAAAGAAACTCCTTTTTAACATGCTATAAGATTCTCTTAGGTATTCAAGATTTATTAGATCACCCAAATCCCAAAGATCCTGCTCAAGCTGACGCCTATACATTATATATACAAAACAGAAAAGAATACGACAGTCGGGTTAAAAAGCAGGCCGAGTCTTTTCGAAATCCCAACTTGTAATTTTCTACATTTCATCTCAAGATATAAGAT AACCATATAATTGTAAATATAAGACAAACC] consensusID : consensus_8628#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 622 fasta sequence [CAANACTCTCGGTACGAGGGGCGATTATGCTGAAGCAGAGGGTATCGCTCTGAAACGCTTAGCAGAGGAACGAAAAGCATGGCGAAAAGATCATCCCTTCGGTTTTGTAGCCAAGCCCATGAAGAACCCTGATGGGTCGTTAGACCTGATGACTTGGAATTGTAGTATACCTGGGAAAAAAGGCACATTGTGGGAGGGAGGATTGTTCAGTCTTAGAATGTACTTCAAGCCGGAATATCCAACAACA-CCTCCCAAATGCAAGTTTGAGCCACCTTTATTCCATCCCAATGTATTTCCGTCTGGTACCGTGTGTCTTTCCCTCTTGGATGAAGAAAAACATTGGAGACCGGCAGTTACAATCAAACAAATTCTCTTAGGTATTCAAGATTTATTAGATCACCCAAATCCCAAAGATCCTGCTCAAGCTGACGCCTATACATTATATATACAAAACAGAAAAGAATACGACAGTCGGGTTAAAAAGCAGGCCGAGTCTTTTCGAAATCCCAACTTGTAATTTTCTACATTTCATCTCAAGATATAAGATAACCATATAATTGTAAATATAAGACAAACCTAATACTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CD082172 [CAANACTCTCGGTACGAGGGCCGATTATGCTGAAGCAGAGGGTATCGCTCTGAAACGCTTAGCAGAGGAACGAAAAGCATGGCGAAAAGATCATCCCTTCGGTTTTGTAGCCAAGCCCATGAAGAACCCTGATGGGTCGTTAGACCTGATGACTTGGAATTGTAGTATACCTGGGAAAAAAGGCACATTGTGGGAGGGAGGATTGTTCAGTCTTAGAATGTACTTCAAGCCGGAATATCCAACAACA CCTCCCAAATGCAAGTTTGAGCCACCTTTATTCCATCCCAATGTATTTCCGTCTGGTACCGTGTGTCTTTCCCTCTTGGATGAAGAAAAACATTGGAGACCGGCAGTTACAATCAAACAAATTCTCTTAGGTATTCAAGATTTATTAGATCACCCAAATCCCAAAGATCCTGCTCAAGCTGACGCCTATACATTATATATACAAAACAGAAAAGAATACGACAGTCGGGTTAAAAAGCAGGCCGAGTCTTTTCGAAATCCCAACTTGTAATTTTCTACATTTCATCTCAAGATATAAGATAACCATATAATTGTAAATATAAGACAAAC ] [+] EMBL AI977464 [ gatatGGGCGATTATGCTGAAGCAGAGGGTATCGCTCTGAAACGCTTAGCAGAGGAACGAAAAGCATGGCGAAAAGATCATCCCTTCGGTTTTGTAGCCAAGCCCATGAAGAACCCTGATGGGTCGTTAGACCTGATGACTTGGAATTGTAGTATACCTGGGAAAAAAGGCACATTGTGGGAGGGAGGATTGTTCAGTCTTAGAATGTACTTCAAGCCGGAATATCCAACAACA CCTCCCAAATGCAAGTTTGAGCCACCTTTATTCCATCCCAATGTATTTCCGTCTGGTACCGTGTGTCTTTCCCTCTTGGATGAAGAAAAACATTGGAGACCGGCAGTTACAATCAAACAAATTCTCTTAGGTATTCAAGATTTATTAGATCACCCAAATCCCAAAGATCCTGCTCAAGCTGACGCCTATACATTATATATACAAAACAGAAAAGAATACGACAGTCGGGTTAAAAAGCAGGCCGAGTCTTTTCGAAATCCCAACTTGTAATTTTCTACATTTCATCTCAAGATATAAGATAACCATATAATTGTAAATATAAGA ] [-] EMBL CD075788 [ GCGATTATGCTGAAGCAGAGGGTATCGCTCTGAAACGCTTAGCAGAGGAACGAAAAGCATGGCGAAAAGATCATCCCTTCGGTTTTGTAGCCAAGCCCATGAAGAACCCTGATGGGTCGTTAGACCTGATGACTTGGAATTGTAGTATACCTGGGAAAAAAGGCACATTGTGGGAGGGAGGATTGTTCAGTCTTAGAATGTACTTCAAGCCGGAATATCCAACAACACCCTCCCAAATGCAAGTTTGAGCCACCTTTATTCCATCCCAATGTATTTCCGTCTGGTACCGTGTGTCTTTCCCTCTTGGATGAAGAAAAACATTGGAGACCGGCAGTTACAATCAAACAAATTCTCTTAGGTATTCAAGATTTATTAGATCACCCAAATCCCAAAGATCCTGCTCAAGCTGACGCCTATACATTATATATACAAAACAGAAAAGAATACGACAGTCGGGTTAAAAAGCAGGCCGAGTCTTTTCGAAATCCCAACTTGTAATTTTCTACATTTCATCTCAAGATATAAGATAACCATATAATTGTAAATATAAGACAAACCc ] [-] EMBL AI395082 [ caAAATGCAAGTTTGAGCCACCTTTATGCCATCCCAATGTATTTCCGTCTGGTACCGTGTGTCTTTCCCTCTTGGATGAAGAAAAACATTGGAGACCGGCAGTTACAATCAAACAAATTCTCTTAGGTATTCAAGATTTATTAGATCACCCAAATCCCAAAGATCCTGCTCAAGCTGACGCCTATACATTATATATACAAAACAGAAAAGAATACGACAGTCGGGTTAAAAAGCAGGCCGAGTCTTTTCGAAATCCCAACTTGTAATTTTATACATTTCATCTCAAGATATAAGATAACCATATAATTGTAAATATAAGACAAACCTAATACTTCAAAAAAAAAAAAAAAA ] [-] EMBL AI394976 [ TCCCTCTTGGTTGAGAAAAAACATTGGAGACCGGCAGTTACAACCAAACAAATTCTCTTAGGTATTCAAGATTTATTAGATCACCCAAATCCCAAAGATCCTGCTCAAGCTGACGCCTATACATTATATATACAAAACAGAAAAGAATACGACAGTCGGGTTAAAAAGCAGGCCGAGTCTTTTCGAAATCCCAACTTGTAATTTTCTACATTTCATCTCAAGATATAAGATAACCATATAATTGTAAATATAAGACAAACCTAATACTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8628#0 CTCCAGGCCAANAATTTGGCACGAGGCGATATGGGCGATTATGCTGAAGCAGAGGGTATC 60 consensus_8628#1 -------CAANACTCTCGGTACGAG-------GGGCGATTATGCTGAAGCAGAGGGTATC 46 * * * ** ***** **************************** consensus_8628#0 GCTCTGAAACGCTTAGCAGAGGAACGAAAAGCATGGCGAAAAGATCATCCCTTCGTATGT 120 consensus_8628#1 GCTCTGAAACGCTTAGCAGAGGAACGAAAAGCATGGCGAAAAGATCATCCCTTCG----- 101 ******************************************************* consensus_8628#0 AAACCAACTAATTATATCATGCCCTAAGGGTTTTGTAGCCAAGCCCATGAAGAACCCTGA 180 consensus_8628#1 -----------------------------GTTTTGTAGCCAAGCCCATGAAGAACCCTGA 132 ******************************* consensus_8628#0 TGGGTCGTTAGACCTGATGACTTGGAATTGTAGTATACCTGGGAAAAAAGGCGTAAGATC 240 consensus_8628#1 TGGGTCGTTAGACCTGATGACTTGGAATTGTAGTATACCTGGGAAAAAAGGC-------- 184 **************************************************** consensus_8628#0 CATAGTATACTCTTTTTAAAGCTATTTAACATTGTGGGAGGGAGGATTGTTCAGTCTTAG 300 consensus_8628#1 ----------------------------ACATTGTGGGAGGGAGGATTGTTCAGTCTTAG 216 ******************************** consensus_8628#0 AATGTACTTCAAGCCGGAATATCCAACAACACCTCCCAAATGCAAGTTTGAGCCACCTTT 360 consensus_8628#1 AATGTACTTCAAGCCGGAATATCCAACAACACCTCCCAAATGCAAGTTTGAGCCACCTTT 276 ************************************************************ consensus_8628#0 ATTCCATCCCAATGTATTTCCGTCTGGTACCGTGTGTCTTTCCCTCTTGGATGAAGAAAA 420 consensus_8628#1 ATTCCATCCCAATGTATTTCCGTCTGGTACCGTGTGTCTTTCCCTCTTGGATGAAGAAAA 336 ************************************************************ consensus_8628#0 ACATTGGAGACCGGTAGTTACAATCAAACAAGTATCTAAAGAAACTCCTTTTTAACATGC 480 consensus_8628#1 ACATTGGAGACCGGCAGTTACAATCAAACAA----------------------------- 367 ************** **************** consensus_8628#0 TATAAGATTCTCTTAGGTATTCAAGATTTATTAGATCACCCAAATCCCAAAGATCCTGCT 540 consensus_8628#1 ------ATTCTCTTAGGTATTCAAGATTTATTAGATCACCCAAATCCCAAAGATCCTGCT 421 ****************************************************** consensus_8628#0 CAAGCTGACGCCTATACATTATATATACAAAACAGAAAAGAATACGACAGTCGGGTTAAA 600 consensus_8628#1 CAAGCTGACGCCTATACATTATATATACAAAACAGAAAAGAATACGACAGTCGGGTTAAA 481 ************************************************************ consensus_8628#0 AAGCAGGCCGAGTCTTTTCGAAATCCCAACTTGTAATTNTCTACATTTCATCTCAAGATA 660 consensus_8628#1 AAGCAGGCCGAGTCTTTTCGAAATCCCAACTTGTAATTTTCTACATTTCATCTCAAGATA 541 ************************************** ********************* consensus_8628#0 TAAGATAAACCATATA-TTGTAAATATAAGACANACC----------------------- 696 consensus_8628#1 TAAGATAA-CCATATAATTGTAAATATAAGACAAACCTAATACTTCAAAAAAAAAAAAAA 600 ******** ******* **************** *** consensus_8628#0 ---------------------- consensus_8628#1 AAAAAAAAAAAAAAAAAAAAAA 622 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||