These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8645#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 810 fasta sequence [CCAAGACGTTCAGAAAAAACATCTATTCATGAATTGATTAGTTCAGTGGATCATTCAAAAAATTTGAAGGAATTACGTAATTTAGCTAAATATCTATTAGATCAATATCATATTGTTACATCTGAACTAGAGCTTCAGTCGGATACTAATTGGTGTTTAAGACAGAGATTAACAAATGCAAACAGTCAATTAAATCGATTAACAGGTTTGCTCAATAAAGGCAGTCAAGGATTATCATCGATTGAAGAAGATTTAAGCTTAGGAACAGACAAGACTTCATTACGTTCAGAACATTATGATGGAATACGTCAAAGATCTCTTCAACCAACC---TATAATCTTAATACTTTACAAGAAAAGCATACAACCAGTGGTCGACGTTTAAATTTTATTCCTTCTTCAGATGAACATTTAGTTAGATCTAGTTATTCATCATCCATTCAAACAATGGGAAGGAAATCAATATTAAAATCAAAATCCAAATCTGACGTATCATCAATGACATCAAGAATCAGTGATCCTGATTATTTTATAATTCATGGAATGTTTATTCCAATGAAAATAATGCAATCTATTTCATCACAAACAGTAAAACATAAAAAACTATCATGTCTTCCACGGAACACATTTAATTGTGGTCCAATATTAAAACGTTCTTCAATTCATCAACATTCACGTAAACGTTATCATTCATCTACTGATTATACAAATCAATCATTATCTACTAGTTCTTGTGTGAATGATCAATCAATCAATAGTAGAACAATTACATCAACGTTAACACCGACGCCAAACACACCTAATGGCATCCTC] [-] EMBL CD067006 [CCAAGACGTTCAGAAAAAACATCTATTCATGAATTGATTAGTTCAGTGGATCATTCAAAAAATTTGAAGGAATTACGTAATTTAGCTAAATATCTATTAGATCAATATCATATTGTTACATCTGAACTAGAGCTTCAGTCGGATACTAATTGGTGTTTAAGACAGAGATTAACAAATGCAAACAGTCAATTAAATCGATTAACAGGTTTGCTCAATAAAGGCAGTCAAGGATTATCATCGATTGAAGAAGATTTAAGCTTAGGAACAGACAAGACTTCATTACGTTCAGAACATTATGATGGAATACGTCAAAGATCTCTTCAACCAACC TATAATCTTAATACTTTACAAGAAAAGCATACAACCAGTGGTCGACGTTTAAATTTTATTCCTTCTTCAGATGAACATTTAGTTAGATCTAGTTATTCATCATCCATTCAAACAATGGGAAGGAAATCAATATTAAAATCAAAATCCAAATCTGACGTATCATCAATGACATCAAG ] [+] EMBL CD117359 [ GATTAACAAATGCAAACAGTCAATTAAATCGACTAACAGGCTTGCTCAATAAAGGCGGTCAAGGATTATCATCGATTGAAGAAGATTTAAGCTTAGGAACAGACAAAACTTCATTACGTTTAGAACATTATGATGGAATACGTCAAAGATCTCTTCAACCCACCTATTATAATCTTAATACTTTACAAGAAAAGCATACAACCAGTGGTCGACGTTTAAATTTTATTCCTTCTTCAAATGAACATTTAGTTAGATCTAGTTATTCGTCATCCATTCAAACAATGGGAAGGAAATCAATATTAAAATCAAAATCCAAGTCTGACGTATCATCAATGACATCAAGAATCAGTGATCCTGATTATTTTATAATTCATGGAATGTTTATTCCAATGAAAATAATGCAATCTATTTCATCACAAACAGTAAAACATAAAAAACTATCATGTCTTCCACGGAACACATTTAATTGTGGTCCAATATTAAAACGTTCTTCAATTCATCAACATTCACGTAAACGTTATCATTCATCTACTGATTATACAAATCAATCATTATCTACTAGTTCTTGTGTGAATGATCAATCAATCAATAGTAGAACAATTACATCAACGTTAACACCGACGCCAAACACACCTAATGGCATCCTC] consensusID : consensus_8645#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 600 fasta sequence [TTAATACTTTACAAGAAAAGCATACAACCAGTGGTCGACGTTTAAATTTTATTCCTTCTTCAAATGAACATTTAGTTAGATCTAGTTATTCGTCATCCATTCAAACAATGGGAAGGAAATCAATATTAAAATCAAAATCCAAGTCTGACGTATCATCAATGACATCAAGAATCAGTGATCCTGATTATTTTATAATTCATGGAATGTTTATTCCAATGAAAATAATGCAATCTATTTCATCACAAACAGTAAAACAT-AAAAAACTATCATGTCTTCCACGGAACACATTTAATTGTGGTCCAATATTAAAACGTTCTTCAATTCATCAACATTCACGTAAACGTTATCATTCATCTACTGATTATACAAATCAATCATTATCTACTAGTTCTTGTGTGAATGATCAATCAATCAATAGTAGAACAATTACATCAACGTTAACACCGACGCCAACAACACCCACACCGACATCAACAACACCGACAGCAACAGCACCGACAACAACCCTAACAGATTCATCTAAACAATTAGATAACAATAATAATCCAAATATTATTATCTCTCATTGGAATGAATTAGAAGAAGGA-CAACAAAAATTAC] [-] EMBL CD125537 [TTAATACTTTACAAGAAAAGCATACAACCAGTGGTCGACGTTTAAATTTTATTCCTTCTTCAAATGAACATTTAGTTAGATCTAGTTATTCGTCATCCATTCAAACAATGGGAAGGAAATCAATATTAAAATCAAAATCCAAGTCTGACGTATCATCAATGACATCAAGAATCAGTGATCCTGATTATTTTATAATTCATGGAATGTTTATTCCAATGAAAATAATGCAATCTATTTCATCACAAACAGTAAAACAT AAAAAACTATCATGTCTTCCACGGAACACATTTAATTGTGGTCCAATATTAAAACGTTCTTCAATTCATCAACATTCACGTAAACGTTATCATTCATCTACTGATTATACAAATCAATCATTATCTACTAGTTCTTGTGTGAATGATCAATCAATCAATAGTAGAACAATTACATCAACGTTAACACCGACGCCAACAACACCCACACCGACATCAACA ] [-] EMBL CD125546 [TTAATACTTTACAAGAAAAGCATACAACCAGTGGTCGACGTTTAAATTTTATTCCTTCTTCAAATGAACATTTAGTTAGATCTAGTTATTCGTCATCCATTCAAACAATGGGAAGGAAATCAATATTAAAATCAAAATCCAAGTCTGACGTATCATCAATGACATCAAGAATCAGTGATCCTGATTATTTTATAATTCATGGAATGTTTATTCCAATGAAAATAATGCAATCTATTTCATCACAAACAGTAAAACAT AAAAAACTATCATGTCTTCCACGGAACACATTTAATTGTGGTCCAATATTAAAACGTTCTTCAATTCATCAACATTCACGTAAACGTTATCATTCATCTACTGATTATACAAATCAATCATTATCTACTAGTTCTTGTGTGAATGATCAATCAATCAATAGTAGAACAATTACATCAACGTTAACACCGACGCCAACAACACCCACACCGACATCAACA ] [-] EMBL CD169826 [ CAGTGGTCGACGTTTAAATTTTATTCCTTCTTCAAATGAACATTTAGTTAGATCTAGTTATTCGTCATCCATTCAAACAATGGGAAGGAAATCAATATTAAAATCAAAATCCAAGTCTGACGTATCATCAATGACATCAAGAATCAGTGATCCTGATTATTTTATAATTCATGGAATGTTTATTCCAATGAAAATAATGCAATCTATTTCATCACAAACAGTAAAACATAAAAAAACTATCATGTCTTCCACGGAACACATTTAATTGTGGTCCAATATTAAAACGTTCTTCAATTCATCAACATTCACGTAAACGTTATCATTCATCTACTGATTATACAAATCAATCATTATCTACTAGTTCTTGTGTGAATGATCAATCAATCAATAGTAGAACAATTACATCAACGTTAACACCGACGCCAACAACACCCACACCGACATCAACAACACCGACAGCAACAGCACCGACAACAACCCTAACAGATTCATCTAAACAATTAGATAACAATAATAATCCAAATATTATTATCTCTCATTGGAATGAATTAGAAGAAGGA CAACAAAAATTAC] [-] EMBL CD097034 [ TATTAAAATCAAAATCCAAGTCTGACGTATCATCAATGACATCAAGAATCAGTGATCCTGATTATTTTATAATTCATGGAATGTTTATTCCAATGAAAATAATGCAATCTATTTCATCACAAACAGTAAAACAT AAAAAACTATCATGTCTTCCACGGAACACATTTAATTGTGGTCCAATATTAAAACGTTCTTCAATTCATCAACATTCACGTAAACGTTATCATTCATCTACTGATTATACAAATCAATCATTATCTACTAGTTCTTGTGTGAATGATCAATCAATCAATAGTAGAACAATTACATCAACGTTAACACCGACGCCAACAACACCCACACCGACATCAACAACACCGACAGCAACAGCACCGACAACAACCCTAACAGATTCATCTAAACAATTAGATAACAATAATAATCCAAATATTATTATCTCTCATTGGAATGAATTAGAAGAAGGATCAAC ] [+] EMBL CD186582 [ ATCAGTGATCCTGATTATTTTATAATTCATGGAATGTTTATTCCAATGAAAATAATGCAATCTATTTCATCACAAACAGTAAAACAT AAAAAACTATCATGTCTTCCACGGAACACATTTAATTGTGGTCCAATATTAAAACGTTCTTCAATTCATCAACATTCACGTAAACGTTATCATTCATCTACTGATTATACAAATCAATCATTATCTACTAGTTCTTGTGTGAATGATCAATCAATCAATAGTAGAACAATTACATCAACGTTAACACCGACGCCAACAACACCCACACCGACATCAACAACACCGACAGCAACAGCACCGACAACAAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8645#0 CCAAGACGTTCAGAAAAAACATCTATTCATGAATTGATTAGTTCAGTGGATCATTCAAAA 60 consensus_8645#1 ------------------------------------------------------------ consensus_8645#0 AATTTGAAGGAATTACGTAATTTAGCTAAATATCTATTAGATCAATATCATATTGTTACA 120 consensus_8645#1 ------------------------------------------------------------ consensus_8645#0 TCTGAACTAGAGCTTCAGTCGGATACTAATTGGTGTTTAAGACAGAGATTAACAAATGCA 180 consensus_8645#1 ------------------------------------------------------------ consensus_8645#0 AACAGTCAATTAAATCGATTAACAGGTTTGCTCAATAAAGGCAGTCAAGGATTATCATCG 240 consensus_8645#1 ------------------------------------------------------------ consensus_8645#0 ATTGAAGAAGATTTAAGCTTAGGAACAGACAAGACTTCATTACGTTCAGAACATTATGAT 300 consensus_8645#1 ------------------------------------------------------------ consensus_8645#0 GGAATACGTCAAAGATCTCTTCAACCAACCTATAATCTTAATACTTTACAAGAAAAGCAT 360 consensus_8645#1 -------------------------------------TTAATACTTTACAAGAAAAGCAT 23 *********************** consensus_8645#0 ACAACCAGTGGTCGACGTTTAAATTTTATTCCTTCTTCAGATGAACATTTAGTTAGATCT 420 consensus_8645#1 ACAACCAGTGGTCGACGTTTAAATTTTATTCCTTCTTCAAATGAACATTTAGTTAGATCT 83 *************************************** ******************** consensus_8645#0 AGTTATTCATCATCCATTCAAACAATGGGAAGGAAATCAATATTAAAATCAAAATCCAAA 480 consensus_8645#1 AGTTATTCGTCATCCATTCAAACAATGGGAAGGAAATCAATATTAAAATCAAAATCCAAG 143 ******** ************************************************** consensus_8645#0 TCTGACGTATCATCAATGACATCAAGAATCAGTGATCCTGATTATTTTATAATTCATGGA 540 consensus_8645#1 TCTGACGTATCATCAATGACATCAAGAATCAGTGATCCTGATTATTTTATAATTCATGGA 203 ************************************************************ consensus_8645#0 ATGTTTATTCCAATGAAAATAATGCAATCTATTTCATCACAAACAGTAAAACATAAAAAA 600 consensus_8645#1 ATGTTTATTCCAATGAAAATAATGCAATCTATTTCATCACAAACAGTAAAACATAAAAAA 263 ************************************************************ consensus_8645#0 CTATCATGTCTTCCACGGAACACATTTAATTGTGGTCCAATATTAAAACGTTCTTCAATT 660 consensus_8645#1 CTATCATGTCTTCCACGGAACACATTTAATTGTGGTCCAATATTAAAACGTTCTTCAATT 323 ************************************************************ consensus_8645#0 CATCAACATTCACGTAAACGTTATCATTCATCTACTGATTATACAAATCAATCATTATCT 720 consensus_8645#1 CATCAACATTCACGTAAACGTTATCATTCATCTACTGATTATACAAATCAATCATTATCT 383 ************************************************************ consensus_8645#0 ACTAGTTCTTGTGTGAATGATCAATCAATCAATAGTAGAACAATTACATCAACGTTAACA 780 consensus_8645#1 ACTAGTTCTTGTGTGAATGATCAATCAATCAATAGTAGAACAATTACATCAACGTTAACA 443 ************************************************************ consensus_8645#0 CCGACGCCAAACACACCTAA--TGGCATCCTC---------------------------- 810 consensus_8645#1 CCGACGCCAACAACACCCACACCGACATCAACAACACCGACAGCAACAGCACCGACAACA 503 ********** ***** * * **** * consensus_8645#0 ------------------------------------------------------------ consensus_8645#1 ACCCTAACAGATTCATCTAAACAATTAGATAACAATAATAATCCAAATATTATTATCTCT 563 consensus_8645#0 ------------------------------------- consensus_8645#1 CATTGGAATGAATTAGAAGAAGGACAACAAAAATTAC 600 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||