These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8653#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1118 fasta sequence [GCCCGGTACCCTGGCTTCCACATCATCTCAATCATTCTTTAAATTCTGTAGTTATTCCAATTACTGTTTCTTTCCTCTTCTCTTTATTTCAAACTTCTGCTGATA-AGTATTTCACTCCTAATCCCTGATACATACTTCTTATGTCTATCCTCATAGGTAGCGCACACCTCAACTATACATAAGTCGCTTAATTAGCTAAACTGAAATGTAGAAAATTGATATGAACTTATAACTTCATAAGATTAACTTAGATCATTAACAACAAAATTATAGGAAGATATAAGTAAAACTAAATCGAGCTTCCCGCAGAATTACATGTAAAAGATTTAATCGGGTCAGTGTACGAGCGTTTTGAACTTCAGTACGCCAAGCTGTTATCCAAGCACGAGTTCGTAGTTCATGAGCTTCAGGGTCCAAAACAGCTTTCTCCAGTTCCTGTGAACGATCGTTACTTTCAGATGCGTCTGATTCTTCTCCAGATGAAAACCTAGTAAATGGTGCATGATCTGGAAAAGAGTTTTTTATATTATGACAATCATCTGTTTCATTTTGATTGGAGTTGAAATTCGACTTAGTGCAAAGATCAGGAACGTTTAAAAAGCGAGGTATTATATTTTCAGCTACTTCAATAAGAGCATTAACAAGTCCTGCTNTATTTGGTAATTCACATAGACTGGGTGAAGATGACAGGTTTGGTTTTGAAGACAAATTTACATTAGGAGTTTCTTGTTGGCTTTCATAGGATGTTTGTACTTGTGCTAAACGCTCTTGCCATTTTGTAAAATCTGGTACACCACCGAGACCACCGGATCTTAGACGAACCTCAGTATCTAAAATATTTTTTAACAATGCTCCTGCCAAAGCGGCTCCAGCAGGAAGATTGCGTTTATGGTGAGATGGACGTTTTTCTATATTCGCAGGAGTACCATTTGTTGTGTCAGCCTTAGGTACCAATCCATTTGAGAGACCACTTTTCCATCTTTTTTTAAGTGATTCCAGAAACCCGTCTGCCAACAACTGACTTTTTAAATGACTTTCTCGAACACCACGAGTTAGCAATGAATTCAACAATTCGTCTAACTGTTCAGGACGATCGTAAAAATACCAATTACTCCAGG] [+] EMBL CD067837 [GCCCGGTACCCTGGCTTCCACATCATCTCAATCATTCTTTAAATTCTGTAGTTATTCCAATTACTGTTTCTTTCCTCTTCTCTTTATTTCAAACTTCTGCTGATA AGTATTTCACTCCCAATCCCTGATACATACTTCTTATGTCTATCCTCATAGGTAGCGCACACCTCAACTATACATAAGTCGCTTAATTAGCTAAACTGAAATGTAGAAAATTGATATGAACTTATAACTTCATAAGATTAACTTAGATCATTAACAACAAAATTATAGGAAGATATAAGTAAAACTAAATCGAGCTTCCCGCAGAATTACATGTAAAAGATTTAATCGGGTCAGTGTACGAGCGTTTTGAACTTCAGTACGCCAAGCTGTTATCCAAGCACGAGTTCGTAGTTCATGAGCTTCAGGGTCCAAAACAGCTTTCTCCAGTTCCTGTGAACGATCGTTACTTTCAGATGCGTCTGATTCTTCTCCAGATGAAAACCTAGTAAATGGTGCATGATCTGGAAAAGAGTTTTTTATATTATGACAATCATCTGTTTCATTTTGATTGGAGTTGAAATTCGACTTAGTGCAAAGATCAGGAACGTTTAAAAAGCGAGGTATTATATTTTCAGCTACTTCAATAAGAGCATTAACAAGTCCTGCTNTATT ] [+] EMBL CD067557 [ AACTTCTGCTGATATAG ATTAAACTCCTAAACCCTGAGACGTACTTCTTATGGCTATACTCATAGGTAGCGCACACCTCAACTATACATAAGTCGCTTAATTAGCTAAACTGAAATGTAGAAAATTGGTATGAACTTATAACTTCATAAAAGTAACTTAAATCATTAACAACCCAATTATAGGAAGATATAAGTAAAACTAAATCGAGCTTCCCGCAGAATTACATGTAAAAGATTTAATCGGGTCAGTGTACGAGCGTTTTGAACTTCAGTACGC ] [+] EMBL CD067556 [ AACTTCTGCTGATA AGTATTTCACTCCTAATCCCTGATACATACTTCTTATGTCTATCCTCATAGGTAGCGCACACCTCAACTATACATAAGTCGCTTAATTAGCTAAACTGAAATGTAGAAAATTGATATGAACTTATAACTTCATAAGATTAACTT ] [-] EMBL CD115707 [ AGATTTAATCGGGTCAGTGTACGAGCGTTTTGACTTTCAGTACGCCAAGCTGTTATCCAAGCACGAGTTCGTAGTTCATGAGCTTCAGGGTCCAAAACAGCTTTCTCCAGTTCCTGTGAACGATCGTTACTNTCAGATGCGTCTGATTCTTCTCCAGATGAAAACCTAGTAAATGGTGCATGATCTGGAAAAGAGTTTTTTATATTATGACAATCATCTGTTTCATTTTGATTGGAGTTGAAATTCGACTTAGTGCAAAGATCAGGAACGTTTAAAAAGCGAGGTATTATATTTTCAGCTACTTCAATAAGAGCATTAACAAGTCCTGCTTTATTTGGTAATTCACATAGACTGGGTGAAGATGACAGGTTTGGTTTTGAAGACAAATTTACATTAGGAGTTTCTTGTTGGCTTTCATAGGATGTTTGTACTTGTGCTAAACGCTCTTGCCATTTTGTAAAATCTGGTACACCACCGAGACCACCGGATCTTAGACGAACCTCAGTATCTAAAATATTTTTTAACAATGCTCCTGCCAAAGCGGCTCCAGCAGGAAGATT ] [-] EMBL CD177701 [ TTAGACGAACCTCAGTATCTAAAATATTTTTTAACAATGCTCCTGCCANAGCGGCTCCAGCAGGAAGATTGCGTTTATGGTGAGATGGACGTTTTTCTATATTCGCAGGAGTACCATTTGTTGTGTCAGCCTTAGGTACCAATCCATTTGAGAGACCACTTTTCCATCTTTTTTTAAGTGATTCCAGAAACCCGTCTGCCAACAACTGACTTTTTAAATGACTTTCTCGAACACCACGAGTTAGCAATGAATTCAACAATTCGTCTAACTGTTCAGGACGATCGTAAAAATACCAATTACTCCAGG] [-] EMBL CD177713 [ AGGAGTACCATTTGTTGTGTCAGCCTTAGGTACCAATCCATTTGAGAGACCACTTTTCCATC TTTTTTAAGTGATTCCAGAAACCCGTCTGCCAACAACTGAC TTTTAAATGACTTTCTCGAACACCACGAGTTAGCAATGAATTCAACAATTCGTCTAACTGTTCAGGACGATCGTAA ] consensusID : consensus_8653#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence [TAGGGCAGAACCAATCACCTGTTGGTACACGTTTTAATGGTGGACGTAAACAGTAGAGATGAAAAGCAAGATTACAACCGTCACAAAGTAGTAAATTATCATCATCTGTTTTCCGACGACAAATACGACAGCGCGCATCCTCCACCGACTTTTCCCAGCGAACACATGCATCCAGACATGCATGTAAAAGATTTAATCGGGTCAGTGTACGAGCGTTTTGAACTTCAGTACGCCAAGCTGTTATCCAAGCACGAGTTCGTAGTTCATGAGCTTCAGGGTCCAAAACAGC] [-] EMBL CD201976 [TAGGGCAGAACCAATCACCTGTTGGTACACGTTTTAATGGTGGACGTAAACAGTAGAGATGAAAAGCAAGATTACAACCGTCACAAAGTAGTAAATTATCATCATCTGTTTTCCGACGACAAATACGACAGCGCGCATCCTCCACCGACTTTTCCCAGCGAACACATGCATCCAGACATGCATGTAAAAGATTTAATCGGGTCAGTGTACGAGCGTTTTGAACTTCAGTACGCCAAGCTGTTATCCAAGCACGAGTTCGTAGTTCATGAGCTTCAGGGTCCAAAACAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8653#0 GCCCGGTACCCTGGCTTCCACATCATCTCAATCATTCTTTAAATTCTGTAGTTATTCCAA 60 consensus_8653#1 ------------------------------------------------------------ consensus_8653#0 TTACTGTTTCTTTCCTCTTCTCTTTATTTCAAACTTCTGCTGATAAGTATTTCACTCCTA 120 consensus_8653#1 ----------------------------------------------------------TA 2 ** consensus_8653#0 ATCCCTGATACATACTTCTTATGTCTATCCTCATAGGTAGCGCACACCTCAACTATACAT 180 consensus_8653#1 GGGC--AGAACCAATCACCTGTTGGTACACGTTTTAATGGTGGACGTAAACAGTAGAGAT 60 * ** * * * * ** * * * * * ** * ** * ** consensus_8653#0 AAGTCGCTTAATTAGCTAAACTGAAATGTAGAAAATTGATATGAACTTATAACTTCATAA 240 consensus_8653#1 GAAAAGCAAGATTACAACCGTCACAAAGTAGTAAATTATCATCATCT----GTTTTCCGA 116 * ** **** ** **** ***** ** * ** ** * consensus_8653#0 GATTAACTTAGATCATTAACAACAAAATTATAGGAAGATATAAGTAAAACTAAATCGAGC 300 consensus_8653#1 CGACAAATACGACAGCGCGCATC----CTCCACCGACTTTT---CCCAGCGAACACATGC 169 ** * ** ** * * * * * * * * ** * ** consensus_8653#0 TTCCCGCAGAATTACATGTAAAAGATTTAATCGGGTCAGTGTACGAGCGTTTTGAACTTC 360 consensus_8653#1 ATCC---AGACATGCATGTAAAAGATTTAATCGGGTCAGTGTACGAGCGTTTTGAACTTC 226 *** *** * ********************************************** consensus_8653#0 AGTACGCCAAGCTGTTATCCAAGCACGAGTTCGTAGTTCATGAGCTTCAGGGTCCAAAAC 420 consensus_8653#1 AGTACGCCAAGCTGTTATCCAAGCACGAGTTCGTAGTTCATGAGCTTCAGGGTCCAAAAC 286 ************************************************************ consensus_8653#0 AGCTTTCTCCAGTTCCTGTGAACGATCGTTACTTTCAGATGCGTCTGATTCTTCTCCAGA 480 consensus_8653#1 AGC--------------------------------------------------------- 289 *** consensus_8653#0 TGAAAACCTAGTAAATGGTGCATGATCTGGAAAAGAGTTTTTTATATTATGACAATCATC 540 consensus_8653#1 ------------------------------------------------------------ consensus_8653#0 TGTTTCATTTTGATTGGAGTTGAAATTCGACTTAGTGCAAAGATCAGGAACGTTTAAAAA 600 consensus_8653#1 ------------------------------------------------------------ consensus_8653#0 GCGAGGTATTATATTTTCAGCTACTTCAATAAGAGCATTAACAAGTCCTGCTNTATTTGG 660 consensus_8653#1 ------------------------------------------------------------ consensus_8653#0 TAATTCACATAGACTGGGTGAAGATGACAGGTTTGGTTTTGAAGACAAATTTACATTAGG 720 consensus_8653#1 ------------------------------------------------------------ consensus_8653#0 AGTTTCTTGTTGGCTTTCATAGGATGTTTGTACTTGTGCTAAACGCTCTTGCCATTTTGT 780 consensus_8653#1 ------------------------------------------------------------ consensus_8653#0 AAAATCTGGTACACCACCGAGACCACCGGATCTTAGACGAACCTCAGTATCTAAAATATT 840 consensus_8653#1 ------------------------------------------------------------ consensus_8653#0 TTTTAACAATGCTCCTGCCAAAGCGGCTCCAGCAGGAAGATTGCGTTTATGGTGAGATGG 900 consensus_8653#1 ------------------------------------------------------------ consensus_8653#0 ACGTTTTTCTATATTCGCAGGAGTACCATTTGTTGTGTCAGCCTTAGGTACCAATCCATT 960 consensus_8653#1 ------------------------------------------------------------ consensus_8653#0 TGAGAGACCACTTTTCCATCTTTTTTTAAGTGATTCCAGAAACCCGTCTGCCAACAACTG 1020 consensus_8653#1 ------------------------------------------------------------ consensus_8653#0 ACTTTTTAAATGACTTTCTCGAACACCACGAGTTAGCAATGAATTCAACAATTCGTCTAA 1080 consensus_8653#1 ------------------------------------------------------------ consensus_8653#0 CTGTTCAGGACGATCGTAAAAATACCAATTACTCCAGG 1118 consensus_8653#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||