cluster # 8687

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Schistosoma mansoni
cluster # 8687 cluster # 8687 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8687#0 length = 148 sequences # 4

consensus_8687#1 length = 91 sequences # 1
consensus_8687#2 length = 66 sequences # 2

consensusID : consensus_8687#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 148
fasta sequence

                              [TAAGTCGACCAGGCTCCAGCTT-ACGA-TATTTGGAG-GTCAGC-AC-GGTGCTCACGTGTCGACGGAACTTGTACAG-GAAGGCATGCACC-GCAGTGGTGAATACACGTCGACCAGGCTCCATGTTAACGATATTTGGTGGTCAGCACGGTGC]

[+] EMBL CD061644             [  AGTCGACCAGGATCCAGCTT ACGA TATTTGGAG GTCAGC AC GGTGCTCACGTGTCGACGGAACTTGTACAG GCAGGCATGCACCTGCAGTGGTGAATACACGTCGACCAGGCTCCATGTTAACGATATTTGGTGGTCAGCACGGTGC]
[+] EMBL CD061796             [tagnattgaCAGGCTCCAGCTTAACGA TATTTGGAG GTCAGC AC GGTGCTCACGTGTCGACGGAACTTGTACAGTGAAGGCATGCACC GCAGTGGTGAATACACGTCGACCAGGCTCCATGTTAACGATA                    ]
[+] EMBL CD061974             [         agtGCTCCAGCTTAACGA TATTTGGAGTGTCAGC ACTGGTGCTCACGTGTCGACGGAACTTGTACAG GGAGGCATGCACC GCAGTGGTGAATACACGTCGACCAGGCT                                  ]
[+] EMBL CD166553             [                   tta ACGAGTATTTGGAG GTCAGCTACTGGTGCTCACGTGTCGACGGAACTTGTACAG G AGGCATGCACC GCAGTGGTGAATACAC                                              ]




>consensus_8687#0
TAAGTCGACCAGGCTCCAGCTTACGATATTTGGAGGTCAGCACGGTGCTCACGTGTCGAC
GGAACTTGTACAGGAAGGCATGCACCGCAGTGGTGAATACACGTCGACCAGGCTCCATGT
TAACGATATTTGGTGGTCAGCACGGTGC

consensusID : consensus_8687#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 91
fasta sequence

                              [CTTGTNCAGGGAGGCATGCACCGCAGTGGTGAATACACGTCGACCAGGCTCCATCTTTACGATCTTTGGAGGTCAGCACGGTGCTCACGTG]

[+] EMBL CD128983             [CTTGTNCAGGGAGGCATGCACCGCAGTGGTGAATACACGTCGACCAGGCTCCATCTTTACGATCTTTGGAGGTCAGCACGGTGCTCACGTG]




>consensus_8687#1
CTTGTNCAGGGAGGCATGCACCGCAGTGGTGAATACACGTCGACCAGGCTCCATCTTTAC
GATCTTTGGAGGTCAGCACGGTGCTCACGTG

consensusID : consensus_8687#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 66
fasta sequence

                              [TGATGGGTGTGCCCTGCGGGAAAGTTCCGTCGACACGTGAGCACC-GTGCTGACCTCCAAATATCGT]

[+] EMBL CD065911             [TGATGGGTGTGCCCTGCGGGAAAGTTCCGTCGACACGTGAGCACC GTGCTGACCTCCAAATATCGT]
[+] EMBL CD065143             [                        TTCCGTCGACACGTGAGCACCTGTGCTGA CTCCAAATATCGT]




>consensus_8687#2
TGATGGGTGTGCCCTGCGGGAAAGTTCCGTCGACACGTGAGCACCGTGCTGACCTCCAAA
TATCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8687#0      TAAGTCGACCAGGCTCCAGCTTACGATATTTGGAGGTCAGCACGGTGCTCACGTGTCGAC 60
consensus_8687#1      ------------------------------------------------------------
consensus_8687#2      ------------------------------------------------------------
                                                                                  

consensus_8687#0      GGAACTTGTACAGGAAGGCATGCACCGCAGTGGTGAATACACGTCGACCAGGCTCCATGT 120
consensus_8687#1      ----CTTGTNCAGGGAGGCATGCACCGCAGTGGTGAATACACGTCGACCAGGCTCCATCT 56
consensus_8687#2      -----------TGATGGGTGTGCCCTGC---GGGAAAGTTCCGTCGACACGTGAGCACCG 46
                                  *   **  *** * **   **  **    *******  *    **   

consensus_8687#0      TAACGATATTTGGTGGTCAGCACGGTGC------- 148
consensus_8687#1      TTACGATCTTTGGAGGTCAGCACGGTGCTCACGTG 91
consensus_8687#2      TGCTGACCTCCAAATATCGT--------------- 66
                      *   **  *       **