These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8693#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 816 fasta sequence [CCTCCGGGCCAANAATTCGGCACGAGGGGTTTTTTGTGCTGATTTGAGGACTATGCCTTTCACGCCAGCAAAAGTAGAGAAGTGTGTACGTTGTGACAAATCGGTTTACGCTGCTGAAAGGATGGAAGCCGGTGGGAATATCTGGCACAAGCGTTGTTTTTGTTGTTCTAAATGTGATATGCTACTGAATTTAAACAATTATAATCAAAGTGATCGAATTCTGTATTGTAAAAAGCATTATCAAGAAGAGGTTTTGGCTAAAAATACCCAAACTCCAATCTAATGTTCTAAAGTAAAAAGAAAAATGGGCAGATATACCTATCTATACTCTTTACCCTTCTTATTACAGCTAAAAATAATAATTGAATTATGATATAATTTTGGGAAGATCTTTATTATTATTATTATTATTATTATTATTATTACTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGTATACCTAAATGTATATCTGTTAGATATATAACTTTTAGTCATTTATCTTAAAGTGGAAAATTTTCTCTTCTTTNTCTTTATGAGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTTTCATAAATGTAACCTTTTCCATCGATATTTTAGTTTCTTATGAATCTTTTGTTTTCTGCTCTTTTAAATCAAATTCTCTTTGATATTTCTTTATCACTAGTATAATCATCTCTTGACAAAAGTTTATCATTTCCCTGTTTTATATAATTGTTCATGGTTATGTAATTGCTTTTATTGAACAAAATAGAGTTTTCCACACAAAAAAAAAAAAAAAAAAAAAAAGGCGGNNAAAAAAAAA] [+] EMBL CD081998 [CCTCCGGGCCAANAATTCGGCACGAGGGGTTTTTTGTGCTGATTTGAGGACTATGCCTTTCACGCCAGCAAAAGTAGAGAAGTGTGTACGTTGTGACAAATCGGTTTACGCTGCTGAAAGGATGGAAGCCGGTGGGAATATCTGGCACAAGCGTTGTTTTTGTTGTTCTAAATGTGATATGCTACTGAATTTAAACAATTATAATCAAAGTGATCGAATTCTGTATTGTAAAAAGCATTATCAAGAAGAGGTTTTGGCTAAAAATACCCAAACTCCAATCTAATGTTCTAAAGTAAAAAGAAAAATGGGCAGATATACCTATCTATACTCTTTACCCTTCTTATTACAGCTAAAAATAATAATTGAATTATGATATAATTTTGGGAAGATCTTTATTATTATTATTATTATTATTATTATTATTACTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGTATACCTAAATGTATATCTGTTAGATATATAACTTTTAGTCATTTATCTTAAAGTGGAAAATTTTCTCTTCTTTNTCTTTATGAGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTNTCATAAATGTAACCTTTTCCATCGATATTTTAGTTTCTTATGAATCTTTTGTTTTCTGCTCTTTTAAATCAAATTCTCTTTGATATTTTCTTATCACTAGTATAATCATCTCTTGACAAAAG TTATCATTCCCCTG TTTATATAAATG TCATGG TATGTAA TGC TTTATTG ACAAtan ] [-] EMBL CD075610 [ AAGCG TGTTTTGTTTGTTCTAAATGTGATATGCTACTGAATTTAAACAATTATAATCAAAGTGATCGAATTCTGTATTGTAAAAAGCATTATCAAGAAGAGGTTTTGGCTAAAAATACCCAAACTCCAATCTAATGTTCTAAAGTAAAAAGAAAAATGGGCAGATATACCTATCTATACTCTTTACCCTTCTTATTACAGCTAAAAATAATAATTGAATTATGATATAATTTTGGGAAGATCTTTATTATTATTATTATTATTATTATTATTATTACTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGTATACCTAAATGTATATCTGTTAGATATATAACTTTTAGTCATTTATCTTAAAGTGGAAAATTTTCTCTTCTTTTTCTTTATGAGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTTTCATAAATGTAACCTTTTCCATCGATATTTTAGTTTCTTATGAATCTTTTGTTTTCTGCTCTTTTAAATCAAATTCTCTTTGATATTTCTTTATCACTAGTATAATCATCTCTTGACAAAAGTTTATCATTTCCCTGTTTTATATAATTGTTCATGGTTATGTAATTGCTTTTATTGAACAAAATAGAGT ] [+] EMBL AA883027 [ CCCAAACTCCAATCTAATGTTCTAAAGTAAAAAGAAAAATGGGCAGATATACCTATCTATACTCTTTACCCTTCTTATTACAGCTAAAAATAATAGTTGAATTATGATATAATTTTGGAAAGATCTTTATTATTATTATTATTATTATTATTATTATTATCAGTAGTAGTAGTAGTGAGTTGaatc ] [+] EMBL CD131601 [ CTTTTTCATAAATGTAACCTTTTCCATCGATATTTTAGTTTCTTATGAATCTTTTGTTTTCTGCTCTTTTAAATCAAATTCTCTTTGATATTTCTTTATCACTAGTATAATCATCTCTTGACAAAAGTTTATCATTTCCCTGTTTTATATAATTGTTCATGGTTATGTAATTGCTTTTATTGAACAAAATAGAGTTTTCCACACAAAAAAAAAAAAAAAAAAAAAAAGGCGGNNAAAAAAAAA] consensusID : consensus_8693#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 707 fasta sequence [CCGGGGGGGTTTTTTTGTGTGGGGGTTTTTTTTTANAAAAAGGNAATTGGNNAAGCCCGGTGGAAATAATCGTGCACCAAGCGGTTGTTGTTGTTGNTTTTTAAATGGGATATGCTGCTGAATTTTAACCAATAATATGCAAAGTTATTGAAATCTGTTNTGGTAAAAGCATTATCAAAGAAGAGGTTTGGCTTAAAAATACCCAACCTCCAATCTAATGTTTTAAAGTAAAAAGAAAAATGGCCAGATATACCTATCTATACTCTTTACCCCTTCTTATTACAGCTAAAAATAATAGTTGAATTATGATATAATTTTGGAAAGATCTTTATTATTATTATTATTATTATTATTATTATTATTACTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGTATACCTAAATGTATATCTGTTAGATATATAACTTTTAGTCATTTATCTTAAAGTGGAAAATTTTCTCTTCTTTTTCTTTATGAGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTTTCATAAATGTAACCTTTTCCATCGATATTTTAGTTTCTTATGAATCTTTTGTTTTCTGCTCTTTTAAATCAAATTCTCTTTGATATTTCTTTATCACTAGTATAATCATCTCTTGACAAAAGTCTATCATTTCCCTGTTTTATATAATTGTTCATGGTTATGTAATTGCTTTTATTGAACAAAATAGAGT] [-] EMBL CD076897 [CCGGGGGGGTTTTTTTGTGTGGGGGTTTTTTTTTANAAAAAGGNAATTGGNNAAGCCCGGTGGAAATAATCGTGCACCAAGCGGTTGTTGTTGTTGNTTTTTAAATGGGATATGCTGCTGAATTTTAACCAATAATATGCAAAGTTATTGAAATCTGTTNTGGTAAAAGCATTATCAAAGAAGAGGTTTGGCTTAAAAATACCCAACCTCCAATCTAATGTTTTAAAGTAAAAAGAAAAATGGCCAGATATACCTATCTATACTCTTTACCCCTTCTTATTACAGCTAAAAATAATAGTTGAATTATGATATAATTTTGGAAAGATCTTTATTATTATTATTATTATTATTATTATTATTATTACTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGTATACCTAAATGTATATCTGTTAGATATATAACTTTTAGTCATTTATCTTAAAGTGGAAAATTTTCTCTTCTTTTTCTTTATGAGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTTTCATAAATGTAACCTTTTCCATCGATATTTTAGTTTCTTATGAATCTTTTGTTTTCTGCTCTTTTAAATCAAATTCTCTTTGATATTTCTTTATCACTAGTATAATCATCTCTTGACAAAAGTCTATCATTTCCCTGTTTTATATAATTGTTCATGGTTATGTAATTGCTTTTATTGAACAAAATAGAGT] [-] EMBL SMAA28897 [ TTATTACTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGTATACCTAAATGTATATCTGTTAGATATATAACTATTAGTCATTTATCTTAAAGTGGAAAATTTTCTCCTCTTTTTCTTTATGAGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTTTCATAAATGTAACCTTTTCCATCGATATTTTAGTNTCTTATGAATCTTTTGTTTTCTGCTCTTTTAAATCAAATTCTCTTTGATATTTCTTTATCACTAGTATAATCATCTCTTGACAAAAGTTTATCATTTCCCTGTTTTATATAATTGTTCATGGTTATGTAATTGCTTTTATTGAACA ] consensusID : consensus_8693#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [TGAAAGTGTGTAAGAAACCTTATTATCAAGGGCCTAGCAATTTAAACAATTATAATCAAAGTGATCGAATTCTGTATTGTAAAAAGCATTATCAAGAAGAGGTTTTGGCTAAAAATACCCAAACTCCAATCTAATGTTCTGAAGTAAAAAGAAAAATGGGCAGATATACCTATCTATACTCTTTACCCTTCTTATTACAGCTAAAAATAATAATTGAATTATGATATAATTTTGGGAAGATCTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTACTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGTATACCTAAATGTATATCTGTTAGATATATAACTTTTAGTCATTTATCTTAAAGTGGAAAATTTTCTCTTCTTTTTCTTTATGAGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTTTCATAAATGTAACCTT] [+] EMBL CD140534 [TGAAAGTGTGTAAGAAACCTTATTATCAAGGGCCTAGCAATTTAAACAATTATAATCAAAGTGATCGAATTCTGTATTGTAAAAAGCATTATCAAGAAGAGGTTTTGGCTAAAAATACCCAAACTCCAATCTAATGTTCTGAAGTAAAAAGAAAAATGGGCAGATATACCTATCTATACTCTTTACCCTTCTTATTACAGCTAAAAATAATAATTGAATTATGATATAATTTTGGGAAGATCTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTACTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGTATACCTAAATGTATATCTGTTAGATATATAACTTTTAGTCATTTATCTTAAAGTGGAAAATTTTCTCTTCTTTTTCTTTATGAGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTTTCATAAATGTAACCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8693#0 CCTCCGGGCCAANAATTCGGCACGAGGGGTTTTTTGTGCTGATTTGAGGACTATGCCTTT 60 consensus_8693#2 ------------------------------------------------------------ consensus_8693#1 ------------------------------------------------------------ consensus_8693#0 CACGCCAGCAAAAGTAGAGAAGTGTGTACGTTGTGACAAATCGGTTTACGCTGCTGAAAG 120 consensus_8693#2 ------------------------------------------------------------ consensus_8693#1 -------------CCGGGGGGGTTTTTTTGTGTGGGGGTTTTTTTTTANAAAAAGGNAAT 47 consensus_8693#0 GATGGAAGCCGGTGGGAATA---TCTGGCACAAGCG-TTGTTTTTGTTGTTCT--AAATG 174 consensus_8693#2 --------------TGAAAG---TGTGTAAGAAACC-TTATTATCAAGGGCCT--AGC-- 38 consensus_8693#1 TGGNNAAGCCCGGTGGAAATAATCGTGCACCAAGCGGTTGTTGTTGTTGNTTTTTAAATG 107 *** ** ** * ** ** * * * * consensus_8693#0 TGATATGCTACTGAATTTAAAC-AATTATAATCAAAGTGATCGAATTCTGTATTGTAAAA 233 consensus_8693#2 -------------AATTTAAAC-AATTATAATCAAAGTGATCGAATTCTGTATTGTAAAA 84 consensus_8693#1 GGATATGCTGCTGAATTTTAACCAATAATATGCAAAGTTATTGAAATCTGTTNTGGTAAA 167 ***** *** *** *** ****** ** *** ***** ** *** consensus_8693#0 AGCATTATCAA-GAAGAGGTTTTGGCTAAAAATACCCAAACTCCAATCTAATGTTCTAAA 292 consensus_8693#2 AGCATTATCAA-GAAGAGGTTTTGGCTAAAAATACCCAAACTCCAATCTAATGTTCTGAA 143 consensus_8693#1 AGCATTATCAAAGAAGAGGTTTGGCTTAAAAATACCCAACCTCCAATCTAATGTTTTAAA 227 *********** ********** * ************* *************** * ** consensus_8693#0 GTAAAAAGAAAAATGGGCAGATATACCTATCTATACTCTTTACCC-TTCTTATTACAGCT 351 consensus_8693#2 GTAAAAAGAAAAATGGGCAGATATACCTATCTATACTCTTTACCC-TTCTTATTACAGCT 202 consensus_8693#1 GTAAAAAGAAAAATGGCCAGATATACCTATCTATACTCTTTACCCCTTCTTATTACAGCT 287 **************** **************************** ************** consensus_8693#0 AAAAATAATAATTGAATTATGATATAATTTTGGGAAGATCTTTATTATTATTATTATTAT 411 consensus_8693#2 AAAAATAATAATTGAATTATGATATAATTTTGGGAAGATCTTTATTATTATTATTATTAT 262 consensus_8693#1 AAAAATAATAGTTGAATTATGATATAATTTTGGAAAGATCTTTATTATTATTATTATTAT 347 ********** ********************** ************************** consensus_8693#0 TATTATTATTATTA------------CTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGT 459 consensus_8693#2 TATTATTATTATTATTATTATTATTACTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGT 322 consensus_8693#1 TATTATTATTATTATTA---------CTAGTAGTAGTAGTAGTGAGTTGTAACCGATTGT 398 ************** ********************************** consensus_8693#0 ATACCTAAATGTATATCTGTTAGATATATAACTTTTAGTCATTTATCTTAAAGTGGAAAA 519 consensus_8693#2 ATACCTAAATGTATATCTGTTAGATATATAACTTTTAGTCATTTATCTTAAAGTGGAAAA 382 consensus_8693#1 ATACCTAAATGTATATCTGTTAGATATATAACTTTTAGTCATTTATCTTAAAGTGGAAAA 458 ************************************************************ consensus_8693#0 TTTTCTCTTCTTTNTCTTTATGAGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTTT 579 consensus_8693#2 TTTTCTCTTCTTTTTCTTTATGAGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTTT 442 consensus_8693#1 TTTTCTCTTCTTTTTCTTTATGAGTGTGTAACTACTCCATTTTTTTCTGTTTCACTTTTT 518 ************* ********************************************** consensus_8693#0 CATAAATGTAACCTTTTCCATCGATATTTTAGTTTCTTATGAATCTTTTGTTTTCTGCTC 639 consensus_8693#2 CATAAATGTAACCTT--------------------------------------------- 457 consensus_8693#1 CATAAATGTAACCTTTTCCATCGATATTTTAGTTTCTTATGAATCTTTTGTTTTCTGCTC 578 *************** consensus_8693#0 TTTTAAATCAAATTCTCTTTGATATTTCTTTATCACTAGTATAATCATCTCTTGACAAAA 699 consensus_8693#2 ------------------------------------------------------------ consensus_8693#1 TTTTAAATCAAATTCTCTTTGATATTTCTTTATCACTAGTATAATCATCTCTTGACAAAA 638 consensus_8693#0 GTTTATCATTTCCCTGTTTTATATAATTGTTCATGGTTATGTAATTGCTTTTATTGAACA 759 consensus_8693#2 ------------------------------------------------------------ consensus_8693#1 GTCTATCATTTCCCTGTTTTATATAATTGTTCATGGTTATGTAATTGCTTTTATTGAACA 698 consensus_8693#0 AAATAGAGTTTTCCACACAAAAAAAAAAAAAAAAAAAAAAAGGCGGNNAAAAAAAAA 816 consensus_8693#2 --------------------------------------------------------- consensus_8693#1 AAATAGAGT------------------------------------------------ 707 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||