These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 932 fasta sequence [TTAGCTGTTGATGCTTGTTAACGCGAGGAAATATGTTTCTAGCTGTTTTCTTTGCTTTGAGTATTTTACTTGAGTCTGGAACCTGCATTGAGTTCGTATTTCCATGTGGCCAACCAAAAATATACGTTGGATATTTATGGATTAACGCAACAGTTGTACATGTAATTCCAAGAATTCAGGCAGCGCCTGACGAACCCAACGATAATTAT------GTTTGTCGTTTCAAAATACATAGTCCCGAAAGCTCCCCATTTTATGTAGAGTTACTGGATCAAAAATATGGATTCGCTGAATTGCGTGTAGATCCAAAATTGTCATCTAATATCACAAAGACTTCATCATTTGTTTTGGAAATAGAAGCGAGCGACTGTGACGAACATTCTCGTACAACTTCTAGAGTTCCCATTCGAGTACAAGTAATAGATCGTCATGGACCTGTTTTTGACAAACCTCACTATAATTTTAAACTTGGTCAAAGAAGTCCAATCGGTAGTATAGTTGGTCAAATCCAAGCTATTGAAGAAGTAAATCAACCAAGCGACTATTCAAATACTGCGATTTGTAGTTATCGTCTTGAGCCTGTTGATAGTCCGTTTTCTATTAATAACTATGGTGTTATACGTGTACGTGAAACACTTTTATCTCTTGCGCAAAGACCTTATTCACTTCGAGTTATTGCAGAGGATTGCAGTCGTCCAGTACCACATAGAACATCAGTCAGTGTAACAGTTGAACAAATTCTTATTGACTGCAAACCAGGCTGGAAAAATTTACCAAGTGATATTGAATTTCTTGGATCTGAAGAAAAACCTGAACGTTTATTTATGCATTCGAGTTTACACTTGGAGACATGTACTGGTCCATGTGCTAATCCATTTATAGAGGCTCGGTTGGAACTTAGAACGGCTGTAATTGGTCAGAATCTAGTTACAGCT] [+] EMBL CD186042 [TTAGCTGTTGATGCTTGTTAACGCGAGGAAATATGTTTCTAGCTGTTTTCTTTGCTTTGAGTATTTTACTTGAGTCTGGAACCTGCATTGAGTTCGTATTTCCATGTGGCCAACCAAAAATATACGTTGGATATTTATGGATTAACGCAACAGTTGTACATGTAATTCCAAGAATTCAGGCAGCGCCTGACGAACCCAACGATAATTAT GTTTGTCGTTTCAAAATACATAGTCCCGAAAGCTCCCCATTTTATGTAGAGTTACTGGATCAAAAATATGGATTCGCTGAATTGCGTGTAGATCCAAAATTGTCATCTAATATCACAAAGACTTCATCATTTGTTTTGGAAATAGAAGCGAGCGACTGTGACGAACATTCTCGTACAAC ] [+] EMBL AI977449 [ TAGCTGTTGATGCTTGTTAACGCGAGGAAATATGTTTCTAGCTGTTTTCTTTGCTTTGAGTATTTTACTTGAGTCTGGAACCTGCATTGAGTTCGTATTTCCATGTGGCCAACCAAAAATATACGTTGGATATTTATGGATTAACGCAACAGTTGTACATGTAATTCCAAGAATTCAGGCAGCGCCTGACGAACCCAACGATAATTATGGAAAAGTTTGTCGTTTCAAAATACATAGTCCCGAAAGCTCCCCATTTTATGTAGAGTTACTGGATCAAAAATATGGATTCGCTGAATTGCGTGTAGATCCAAAATTGTCATCTAATATCACAAAGACTTCATCATTTGTTTTGGAAATAGAAGCGAGCGACTGTGACGAACATTCTCGTACAACTTCTAGAGTTCCCATTCGAGTACAAGTAATAGATC ] [+] EMBL AI977036 [ TAGCTGTTGATGCTTGTTAACGCGAGGAAATATGTTTCTAGCTGTTTTCTTTGCTTTGAGTATTTTACTTGAGTCTGGAACCTGCATTGAGTTCGTATTTCCATGTGGCCAACCAAAAATATACGTTGGATATTTATGGATTAACGCAACAGTTGTACATGTAATTCCAAGAATTCAGGCAGCGCCTGACGAACCCAACGATAATTAT GTTTGTCGTTTCAAAATACATAGTCCCGAAAGCTCCCCATTTTATGTAGAGTTACTGGATCAAAAATATGGATTCGCTGAATTGCGTGTAGATCCAAAATTGTCATCTAATATAACAAAGACTTCATCATTTGTTTTGGAAATAGAAGCGAGCGACTGTGACGAACATTCTCGTACAACTTCTAGAGTTCCCATTCGAGTACAAGTAATAGATCGT ] [+] EMBL CD168099 [ TGTGACGAACATTCTCGTACAACTTCTAGAGTTCCCATTCGAGTACAAGTAATAGATCGTCATGGACCTGTTTTTGACAAACCTCACTATAATTTTAAACTTGGTCAAAGAAGTCCAATCGGTAGTATAGTTGGTCAAATCCAAGCTATTGAAGAAGTAAATCAACCAAGCGACTATTCAAATACTGCGATTTGTAGTTATCGTCTTGAGCCTGTTGATAGTCCGTTTTCTATTAATAACTATGGTGTTATACGTGTACGTGAAACACTTTTATCTCTTGCGCAAAGACCTTATTCACTTCGAGTTATTGCAGAGGATTGCAGTCGTCCAGTACCACATAGAACATCAGTCAGTGTAACAGTTGAACAAATTCTTATTGACTGCAAACCAGGCTGGAAAAATTTACCAAGTGATATTGAATTTCTTGGATCTGAAGAAAAACCTGAACGTTTATTTATGCATTCGAGTTTACACTTGGAGACATGTACTGGTCCATGTGCTAATCCATTTATAGAGGCTCGGTTGGAACTTAGAACGGCTGTAATTGGTCAGAATCTAGTTACAGC ] [-] EMBL CD167897 [ GTGACGAACATTCTCGTACAACTTCTAGAGTTCCCATTCGAGTACAAGTAATAGATCGTCATGGACCTGTTTTTGACAAACCTCACTATAATTTTAAACTTGGTCAAAGAAGTCCAATCGGTAGTATAGTTGGTCAAATCCAAGCTATTGAAGAAGTAAATCAACCAAGCGACTATTCAAATACTGCGATTTGTAGTTATCGTCTTGAGCCTGTTGATAGTCCGTTTTCTATTAATAACTATGGTGTTATACGTGTACGTGAAACACTTTTATCTCTTGCGCAAAGACCTTATTCACTTCGAGTTATTGCAGAGGATTGCAGTCGTCCAGTACCACATAGAACATCAGTCAGTGTAACAGTTGAACAAATTCTTATTGACTGCAAACCAGGCTGGAAAAATTTACCAAGTGATATTGAATTTCTTGGATCTGAAGAAAAACCTGAACGTTTATTTATGCATTCGAGTTTACACTTGGAGACATGTACTGGTCCATGTGCTAATCCATTTATAGAGGCTCGGTTGGAACTTAGATCGGCTGTAATTGGTCAGAATCTAGTTACAGCT] consensusID : consensus_8709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 235 fasta sequence [CCTCGGTCACCCTGGNCAAGGGTGGNAAATCAGGAAGCGAGCGACTGTGACGAACATTCTCGTACAACTTCTAGAGTTCCCATTCGAGTACAAGTAATAGATCGTCATGGACCTGTTTTTGACAAACCTCACTATAATTTTAAACTTGGTCAAAGAAGTCCAATCGGTAGTATAGTTGGTCAAATCCAAGCTATTGAAGAAGTAAATCAACCAAGCGACTATTCAAATACTGCGA] [+] EMBL CD168201 [CCTCGGTCACCCTGGNCAAGGGTGGNAAATCAGGAAGCGAGCGACTGTGACGAACATTCTCGTACAACTTCTAGAGTTCCCATTCGAGTACAAGTAATAGATCGTCATGGACCTGTTTTTGACAAACCTCACTATAATTTTAAACTTGGTCAAAGAAGTCCAATCGGTAGTATAGTTGGTCAAATCCAAGCTATTGAAGAAGTAAATCAACCAAGCGACTATTCAAATACTGCGA] [+] EMBL CD168228 [ TGTGACGAACATTCTCGTACAACTTCTAGAGTTCCCATTCGAGTACAAGTAATAGATCGTCATGGACCTGTTTTTGACAAACCTCACTATAATTTTAAACTTGGTCAAAGAAGTCCAATCGGTAGTATAGTTGGTCAAATCCAAGCTATTGAAGAAGTAAATCAACCAAGCGACTATTCAAATACTGCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8709#0 TTAGCTGTTGATGCTTGTTAACGCGAGGAAATATGTTTCTAGCTGTTTTCTTTGCTTTGA 60 consensus_8709#1 ------------------------------------------------------------ consensus_8709#0 GTATTTTACTTGAGTCTGGAACCTGCATTGAGTTCGTATTTCCATGTGGCCAACCAAAAA 120 consensus_8709#1 ------------------------------------------------------------ consensus_8709#0 TATACGTTGGATATTTATGGATTAACGCAACAGTTGTACATGTAATTCCAAGAATTCAGG 180 consensus_8709#1 ------------------------------------------------------------ consensus_8709#0 CAGCGCCTGACGAACCCAACGATAATTATGTTTGTCGTTTCAAAATACATAGTCCCGAAA 240 consensus_8709#1 ------------------------------------------------------------ consensus_8709#0 GCTCCCCATTTTATGTAGAGTTACTGGATCAAAAATATGGATTCGCTGAATTGCGTGTAG 300 consensus_8709#1 ------------------------------------------------------------ consensus_8709#0 ATCCAAAATTGTCATCTAATATCACAAAGACTTCATCATTTGTTTTGGAAATAGAAGCGA 360 consensus_8709#1 ---------------CCTCGGTCAC-----CCTGGNCAAGGGTGGNAAATCAGGAAGCGA 40 * **** * * ** ** * ******* consensus_8709#0 GCGACTGTGACGAACATTCTCGTACAACTTCTAGAGTTCCCATTCGAGTACAAGTAATAG 420 consensus_8709#1 GCGACTGTGACGAACATTCTCGTACAACTTCTAGAGTTCCCATTCGAGTACAAGTAATAG 100 ************************************************************ consensus_8709#0 ATCGTCATGGACCTGTTTTTGACAAACCTCACTATAATTTTAAACTTGGTCAAAGAAGTC 480 consensus_8709#1 ATCGTCATGGACCTGTTTTTGACAAACCTCACTATAATTTTAAACTTGGTCAAAGAAGTC 160 ************************************************************ consensus_8709#0 CAATCGGTAGTATAGTTGGTCAAATCCAAGCTATTGAAGAAGTAAATCAACCAAGCGACT 540 consensus_8709#1 CAATCGGTAGTATAGTTGGTCAAATCCAAGCTATTGAAGAAGTAAATCAACCAAGCGACT 220 ************************************************************ consensus_8709#0 ATTCAAATACTGCGATTTGTAGTTATCGTCTTGAGCCTGTTGATAGTCCGTTTTCTATTA 600 consensus_8709#1 ATTCAAATACTGCGA--------------------------------------------- 235 *************** consensus_8709#0 ATAACTATGGTGTTATACGTGTACGTGAAACACTTTTATCTCTTGCGCAAAGACCTTATT 660 consensus_8709#1 ------------------------------------------------------------ consensus_8709#0 CACTTCGAGTTATTGCAGAGGATTGCAGTCGTCCAGTACCACATAGAACATCAGTCAGTG 720 consensus_8709#1 ------------------------------------------------------------ consensus_8709#0 TAACAGTTGAACAAATTCTTATTGACTGCAAACCAGGCTGGAAAAATTTACCAAGTGATA 780 consensus_8709#1 ------------------------------------------------------------ consensus_8709#0 TTGAATTTCTTGGATCTGAAGAAAAACCTGAACGTTTATTTATGCATTCGAGTTTACACT 840 consensus_8709#1 ------------------------------------------------------------ consensus_8709#0 TGGAGACATGTACTGGTCCATGTGCTAATCCATTTATAGAGGCTCGGTTGGAACTTAGAA 900 consensus_8709#1 ------------------------------------------------------------ consensus_8709#0 CGGCTGTAATTGGTCAGAATCTAGTTACAGCT 932 consensus_8709#1 -------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||