cluster # 8731

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8731 cluster # 8731 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8731#0 length = 940 sequences # 6

consensus_8731#1 length = 245 sequences # 1

consensusID : consensus_8731#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 940
fasta sequence

                              [AAACGAATTAATCTTGGTCAGTTATGCACTAGTTTGGATAAAAAAGATATTTTGTCTAAACCACTTCCGGATTTATTATTACCATTTCAGCATTTACTTTTAAACTTTCCTCGTGTATTATTTCATCATTGGGTTGTTGCACATGCTGAAGTAACAGTTGATAAATTAACAGCTAATCGATCAAATAAAGTAAATCATGATTATATATGTGAACGAACTGAAATGTTGGCTATTCTCTTGCACAATGCACTTATTTTAATGGTGAAGGACGGTGAACGTTACATCTTACGTAGTTTTAAAGCTGTACGTGAACAAGGCGGTTGCAGCGGTAGTAGCGGAATCTCCAGTACTTCTGCTTCTAACAGTAGTACTGTTGAACGTCCTTCCAGTTTCGGATCACCTGGTACAACTAGTGAAAAAGATCGACCCAACTCAGGCAATATTTCTGGTTATTCTTCTATCTCTTCATGTAGTTCTCTTATTTCTTTGCCTGGTTCAAATACTCAATCACATACAAGCCTTGTTTCGGCAGCAGCTAGTGCTGCAGTCGCCAGTATGACTGATCGTTCGTCGACGTCGTTGGGAAGTTCAAAACTTGTTCCTATATTCCCATTGATAGATGTGTTTACTTCGTGTGGTGAAAAATTTGGTGGTGATCATCTATTAAATGTTGTCTTTATGAAGCAAACAGTTTTGATCCGGTTATTGTTTTCAAAAGAAGATGAAAGGCAAAATTGGTCAGCTTATATTCAAGAAAATAGTGTGACTACACAAAGTATTGATCGACAACGTGTGTTGAAACCAAGTGCTTCTGCCGCTGCCGCCTCTTCATCACCATCGTCATCTACTCAAAATCGGCCGACGATCGGTATAACTTCTGAATCGCTTATTTCTAAAACCTCAGGTAACACACCTACAGCTGATGAAGTGTTCAGTTATT]

[+] EMBL CD118786             [AAACGAATTAATCTTGGTCAGTTATGCACTAGTTTGGATAAAAAAGATATTTTGTCTAAACCACTTCCGGATTTATTATTACCATTTCAGCATTTACTTTTAAACTTTCCTCGTGTATTATTTCATCATTGGGTTGTTGCACATGCTGAAGTAACAGTTGATAAATTAACAGCTAATCGATCAAATAAAGTAAATCATGATTATATATGTGAACGAACTGAAATGTTGGCTATTCTCTTGCACAATGCACTTATTTTAATGGTGAAGGACGGTGAACGTTACATCTTACGTAGTTTTAAAGCTGTACGTGAACAAGGCGGTTGCAGCGGTAGTAGCGGAATCTCCAGTACTTCTGCTTCTAACAGTAGTACTGTTGAACGTCCTTCCAGTTTCGGATCACCTGGTACAACTAGTGAAAAAGATCGACCCAACTCAGGCAATATTTCTGGTTATTCTTCTATCTCTTCATGTAGNTCTCTTATTTCTTTGCCTGGTTCANATACTCAATCACATACAAGCCTTGTTTCGGCAGCAGCTAGTGCTGCAGTCGCCAGTATGA                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD192574             [                                                                                                                                                                                                                                                                                                                                 TGCAGCGGTAGTAGCGGAATCTCCAGTACTTCTGCTTCTAACAGTAGTACTGTTGAACGTCTTTCCAGTTTCGGATCACCTGGTACAACTAGTGAAAAAGATCGACCCAACTCAGGCAATATTTCTGGTTATTCTTCTATCTCTTCATGTAGTTCTCTTATTTCTTTGCCTGGTTCAAATACTCAATCACATACAAGCCTTGTTTCGGCAGCAGCTAGTGCTGCAGTCGCCAGTATGACTGATCGTTCGTCGACGTCGTTGGGAAGTTCAAAACTTGTTCCTATATT                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD127147             [                                                                                                                                                                                                                                                                                                                                                                                                                          TAGTGAAAAAGATCGACCCAACTCAGGCAATATTTCTGGTTATTCTTCTATCTCTTCATGTAGTTCTCTTATTTCTTTGCCTGGTTCAAATACTCAACCACATACAAGCCTTGTTTCGGCAGCAGCTAGTGCTGCAGTCGCCAGTATGACTGATCGTTCGTCGACGTCGTTGGGAAGTTCAAAACTTGTTCCTATATTCCCATTGATAGATGTGTTTACTTCGTGTGGTGAAAAATTTGGTGGTGATCATCTATTAAATGTTGTCTTTATGAAGCAAACAGTTTTGATCCGGTTATTGTTTTCAAAAGAAGATGAAAGGCAAAATTGGTCAGCTTATATTCAAGAAAATAGTGTGACTACACAAAGTATTGATCGACAACGTGTGTTGAAACCAAGTGCTTCTGCCGCTGCCGCCTCTTCATCACCATCGTCATCTACTCAAAATCGGCCGACGATCGGTATAACTTCTGAATCGCTTATTTCTAAAACCTC                                      ]
[-] EMBL CD127130             [                                                                                                                                                                                                                                                                                                                                                                                                                          TAGTGAAAAAGATCGACCCAACTCAGGCAATATTTCTGGTTATTCTTCTATCTCTTCATGTAGTTCTCTTATTTCTTTGCCTGGTTCAAATACTCAACCACATACAAGCCTTGTTTCGGCAGCAGCTAGTGCTGCAGTCGCCAGTATGACTGATCGTTCGTCGACGTCGTTGGGAAGTTCAAAACTTGTTCCTATATTCCCATTGATAGATGTGTTTACTTCGTGTGGTGAAAAATTTGGTGGTGATCATCTATTAAATGTTGTCTTTATGAAGCAAACAGTTTTGATCCGGTTATTGTTTTCAAAAGAAGATGAAAGGCAAAATTGGTCAGCTTATATTCAAGAAAATAGTGTGACTACACAAAGTATTGATCGACAACGTGTGTTGAAACCAAGTGCTTCTGCCGCTGCCGCCTCTTCATCACCATCGTCATCTACTCAAAATCGGCCGACGATCGGTATAACTTCTGAATCGCTTATTTCTAAAACCTC                                      ]
[-] EMBL CD063662             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CATACAAGCCTTGTTTCGGCAGCAGCTAGTGCTGCAGTCGCCAGTATGACTGATCGTTCGTCGACGTCGTTGGGAAGTTCAAAACTTGTTCCTATATTCCCATTGATAGATGTGTTTACTTCGTGTGGTGAAAAATTTGGTGGTGATCATCTATTAAATATTGTCTTTATGAAGCAAACAGTTTTGATCCGGTTATTGTTTTCAAAAGAAGATGAAAGGCAAAATTGGTCAGCTTATATTCAAGAAAATAGTGTGACTACACAAAGTATTGATCGACAACGTGTGTTGAAACCAAGTGCTTCTGCCGCTGCCGCCTCTTCATCACCATCGTCATCTACTCAAAATCGGCCGACGATCGGTATAACTTCTGAATCGCTTATTTCTAAAACCTCAGGTAACACACCTACAGCTGATGAAGTGTTCA      ]
[-] EMBL CD169578             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGTATGACTGATCGTTCGTCGACGTCGTTGGGAAGTTCAAAACTTGTTCCTATATTCCCATTGATAGATGTGTTTACTTCGTGTGGTGAAAAATTTGGTGGTGATCATCTATTAAATATTGTCTTTATGAAGCAAACAGTTTTGATCCGGTTATTGTTTTCAAAAGAAGATGAAAGGCAAAATTGGTCAGCTTATATTCAAGAAAATAGTGTGACTACACAAAGTATTGATCGACAACGTGTGTTGAAACCAAGTGCTTCTGCCGCTGCCGCCTCTTCATCACCATCGTCATCTACTCAAAATCGGCCGACGATCGGTATAACTTCTGAATCGCTTATTTCTAAAACCTCAGGTAACACACCTACAGCTGATGAAGT TTCAGTTATT]




>consensus_8731#0
AAACGAATTAATCTTGGTCAGTTATGCACTAGTTTGGATAAAAAAGATATTTTGTCTAAA
CCACTTCCGGATTTATTATTACCATTTCAGCATTTACTTTTAAACTTTCCTCGTGTATTA
TTTCATCATTGGGTTGTTGCACATGCTGAAGTAACAGTTGATAAATTAACAGCTAATCGA
TCAAATAAAGTAAATCATGATTATATATGTGAACGAACTGAAATGTTGGCTATTCTCTTG
CACAATGCACTTATTTTAATGGTGAAGGACGGTGAACGTTACATCTTACGTAGTTTTAAA
GCTGTACGTGAACAAGGCGGTTGCAGCGGTAGTAGCGGAATCTCCAGTACTTCTGCTTCT
AACAGTAGTACTGTTGAACGTCCTTCCAGTTTCGGATCACCTGGTACAACTAGTGAAAAA
GATCGACCCAACTCAGGCAATATTTCTGGTTATTCTTCTATCTCTTCATGTAGTTCTCTT
ATTTCTTTGCCTGGTTCAAATACTCAATCACATACAAGCCTTGTTTCGGCAGCAGCTAGT
GCTGCAGTCGCCAGTATGACTGATCGTTCGTCGACGTCGTTGGGAAGTTCAAAACTTGTT
CCTATATTCCCATTGATAGATGTGTTTACTTCGTGTGGTGAAAAATTTGGTGGTGATCAT
CTATTAAATGTTGTCTTTATGAAGCAAACAGTTTTGATCCGGTTATTGTTTTCAAAAGAA
GATGAAAGGCAAAATTGGTCAGCTTATATTCAAGAAAATAGTGTGACTACACAAAGTATT
GATCGACAACGTGTGTTGAAACCAAGTGCTTCTGCCGCTGCCGCCTCTTCATCACCATCG
TCATCTACTCAAAATCGGCCGACGATCGGTATAACTTCTGAATCGCTTATTTCTAAAACC
TCAGGTAACACACCTACAGCTGATGAAGTGTTCAGTTATT

consensusID : consensus_8731#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 245
fasta sequence

                              [GATTTATTATTACCATTTCAGCATTTACTTCTAAACTTTCCTCGAGTATTATTTCATCATTGGGCTGATGCTCATGCTGACGTAGCAGATGATAAATTAACAGCTGATCGATCAGATAATAGGAAACCATGATTATATATGCGAACGAACTGAAATGGTGGCTATTCTCTTGCACAATGCACTTATTTTAATGGTGAAGGACGGAGAACGCTACATTGTACGTAGGTCTAAAGCTGTACGTGAAC]

[+] EMBL CD118883             [GATTTATTATTACCATTTCAGCATTTACTTCTAAACTTTCCTCGAGTATTATTTCATCATTGGGCTGATGCTCATGCTGACGTAGCAGATGATAAATTAACAGCTGATCGATCAGATAATAGGAAACCATGATTATATATGCGAACGAACTGAAATGGTGGCTATTCTCTTGCACAATGCACTTATTTTAATGGTGAAGGACGGAGAACGCTACATTGTACGTAGGTCTAAAGCTGTACGTGAAC]




>consensus_8731#1
GATTTATTATTACCATTTCAGCATTTACTTCTAAACTTTCCTCGAGTATTATTTCATCAT
TGGGCTGATGCTCATGCTGACGTAGCAGATGATAAATTAACAGCTGATCGATCAGATAAT
AGGAAACCATGATTATATATGCGAACGAACTGAAATGGTGGCTATTCTCTTGCACAATGC
ACTTATTTTAATGGTGAAGGACGGAGAACGCTACATTGTACGTAGGTCTAAAGCTGTACG
TGAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8731#0      AAACGAATTAATCTTGGTCAGTTATGCACTAGTTTGGATAAAAAAGATATTTTGTCTAAA 60
consensus_8731#1      ------------------------------------------------------------
                                                                                  

consensus_8731#0      CCACTTCCGGATTTATTATTACCATTTCAGCATTTACTTTTAAACTTTCCTCGTGTATTA 120
consensus_8731#1      ---------GATTTATTATTACCATTTCAGCATTTACTTCTAAACTTTCCTCGAGTATTA 51
                               ****************************** ************* ******

consensus_8731#0      TTTCATCATTGGGTTGTTGCACATGCTGAAGTAACAGTTGATAAATTAACAGCTAATCGA 180
consensus_8731#1      TTTCATCATTGGGCTGATGCTCATGCTGACGTAGCAGATGATAAATTAACAGCTGATCGA 111
                      ************* ** *** ******** *** *** **************** *****

consensus_8731#0      TCAAATAA-AGTAAATCATGATTATATATGTGAACGAACTGAAATGTTGGCTATTCTCTT 239
consensus_8731#1      TCAGATAATAGGAAACCATGATTATATATGCGAACGAACTGAAATGGTGGCTATTCTCTT 171
                      *** **** ** *** ************** *************** *************

consensus_8731#0      GCACAATGCACTTATTTTAATGGTGAAGGACGGTGAACGTTACATCTTACGTAGTTTTAA 299
consensus_8731#1      GCACAATGCACTTATTTTAATGGTGAAGGACGGAGAACGCTACATTGTACGTAGGTCTAA 231
                      ********************************* ***** *****  ******* * ***

consensus_8731#0      AGCTGTACGTGAACAAGGCGGTTGCAGCGGTAGTAGCGGAATCTCCAGTACTTCTGCTTC 359
consensus_8731#1      AGCTGTACGTGAAC---------------------------------------------- 245
                      **************                                              

consensus_8731#0      TAACAGTAGTACTGTTGAACGTCCTTCCAGTTTCGGATCACCTGGTACAACTAGTGAAAA 419
consensus_8731#1      ------------------------------------------------------------
                                                                                  

consensus_8731#0      AGATCGACCCAACTCAGGCAATATTTCTGGTTATTCTTCTATCTCTTCATGTAGTTCTCT 479
consensus_8731#1      ------------------------------------------------------------
                                                                                  

consensus_8731#0      TATTTCTTTGCCTGGTTCAAATACTCAATCACATACAAGCCTTGTTTCGGCAGCAGCTAG 539
consensus_8731#1      ------------------------------------------------------------
                                                                                  

consensus_8731#0      TGCTGCAGTCGCCAGTATGACTGATCGTTCGTCGACGTCGTTGGGAAGTTCAAAACTTGT 599
consensus_8731#1      ------------------------------------------------------------
                                                                                  

consensus_8731#0      TCCTATATTCCCATTGATAGATGTGTTTACTTCGTGTGGTGAAAAATTTGGTGGTGATCA 659
consensus_8731#1      ------------------------------------------------------------
                                                                                  

consensus_8731#0      TCTATTAAATGTTGTCTTTATGAAGCAAACAGTTTTGATCCGGTTATTGTTTTCAAAAGA 719
consensus_8731#1      ------------------------------------------------------------
                                                                                  

consensus_8731#0      AGATGAAAGGCAAAATTGGTCAGCTTATATTCAAGAAAATAGTGTGACTACACAAAGTAT 779
consensus_8731#1      ------------------------------------------------------------
                                                                                  

consensus_8731#0      TGATCGACAACGTGTGTTGAAACCAAGTGCTTCTGCCGCTGCCGCCTCTTCATCACCATC 839
consensus_8731#1      ------------------------------------------------------------
                                                                                  

consensus_8731#0      GTCATCTACTCAAAATCGGCCGACGATCGGTATAACTTCTGAATCGCTTATTTCTAAAAC 899
consensus_8731#1      ------------------------------------------------------------
                                                                                  

consensus_8731#0      CTCAGGTAACACACCTACAGCTGATGAAGTGTTCAGTTATT 940
consensus_8731#1      -----------------------------------------