These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8738#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1155 fasta sequence [CCGAGCCAANAATTCGGCACGAGGGCGAACAGCAAATTACATGACAGCTCATACCAAAGATTGTCCATCATGTCATGTGTGTATCGAGAAAAATGAAGGTTGCAATCATATGAAATGCTCAATTTGTCACTACGAATTCTGCTGGGTGTGTTTAGGGGTTTGGAAATCACACGATGCAGAATACTATTTTTGCAGCAAATATCAAGAGAATCCAGATTCTGCAAAAGAATCCGTACGAACACGTGCACGTGAATCCCTGGAACGCTACATGTTTTATTATGAACGATGGGAAAATCATGAACGTAGTCTACGATTAGAACATGATCAACGAGCACGTATTCAAACGCGTATTAATGAAAAAGTCCTGAAAAAAGAAGGTACATGGATTGACTGGCAATATTTGCTACTCGCTGCAGATACATTAAGAAATTGTCGATATACTTTAAAGTATACTTATCCTCATGCATTTTATGGTGAAAAATTGGAACGTAAAGAGTTATTTGAATATCAGCAAGCTTTACTAGAAGCGGAAGTAGAAGATTTATCATGGAAAATAGAACATGCTGAAATAACAGATCGAGCAGATTTACAAAATAAAATGGATATTTGTGAAAAGCATCGTTTAACTTTGTTACAAGAATTTCTAACTAATTAAATCATATTCTCATTTCTTTTGTTTTTTTCTAATTCAGGAGAATTATTTATTTATTACCTTTATGTTAGTGATCTATAAGATTTCATTTACCTTCATCTCTTTTTTTTCTGCTACTTATCTATCTACTTACTTAGATAAGACAATGATACACACTAGCGGTGTTAACGATTACATAGCATCTTTTCTTTGTTTAAAATTTTAGTCTTATCCTTTTAATTACACACAGTCACTCTTCTGTTAATGTTTCTGGTACAATATTCATTAGTCTTCATGATGGTATCCTTTCTCTACTTATTTTCACTGTTGAGTGCANATAGACTCATTGAAACACATTAATCTTGGCTTCTGATNCATAGCGTGTGCTATTTGCCAAATTTGCTATGTCTTATTTTTATTATAATGTNATCTATCTTTACCAGTTACTATCGGNGATNTAATCATACTTGATATNCTCTAGAACACTATGGAATNCTCCTTGAATNNATATCAATCTCGATATA] [+] EMBL CD082695 [CCGAGCCAANAATTCGGCACGAGGGCGAACAGCAAATTACATGACAGCTCATACCAAAGATTGTCCATCATGTCATGTGTGTATCGAGAAAAATGAAGGTTGCAATCATATGAAATGCTCAATTTGTCACTACGAATTCTGCTGGGTGTGTTTAGGGGTTTGGAAATCACACGATGCAGAATACTATTTTTGCAGCAAATATCAAGAGAATCCAGATTCTGCAAAAGAATCCGTACGAACACGTGCACGTGAATCCCTGGAACGCTACATGTTTTATTATGAACGATGGGAAAATCATGAACGTAGTCTACGATTAGAACATGATCAACGAGCACGTATTCAAACGCGTATTAATGAAAAAGTCCTGAAAAAAGAAGGTACATGGATTGACTGGCAATATTTGCTACTCGCTGCAGATACATTAAGAAATTGTCGATATACTTTAAAGTATACTTATCCTCATGCATTTTATGGTGAAAAATTGGAACGTAAAGAGTTATTTGAATATCAGCAAGCTTTACTAGAAGCGGAAGTAGAAGATTTATCATGGAAAATAGAACATGCTGAAATAACAGATCGAGCAGATTTACAAAATAAAATGGATATTTGTGAAAAGCATCGTTTAACTTTGTTACAAGAATTTCTAACTAATTAAATCATATTCTCATTTCTTTTGGGTTTTTCTA ] [-] EMBL CD178775 [ GAGAATCCAGATTCTGCAAAAGAATCCGTACGAACACGTGCACGTGAATCCCTGGAACGCTACATGTTTTATTATGAACGATGGGAAAATCATGAACGTAGTCTACGATTAGAACATGATCAACGAGCACGTATTCAAACGCGTATTAATGAAAAAGTCCTGAAAAAAGAAGGTACATGGATTGACTGGCAATATTTGCTACTCGCTGCAGATACATTAAGAAATTGTCGATATACTTTAAAGTATACTTATCCTCATGCATTTTATGGTGAAAAATTGGAACGTAAAGAGTTATTTGAATATCAGCAAGCTTTACTAGAAGCGGAAGTAGAAGATTTATCATGGAAAATAGAACATGCTGAAATAACAGATCGAGCAGATTTACAAAATAAAATGGATATTTGTGAAAAGCATCGTTTAACTTTGTTACAAGAATTTCTAACTAATTAAATCATATTCTCATTTCTTTTGTTTTTTTCTAATTCAGGAGAATTATTTATTTATTACCTTTATGTTAGTGATCTATAAGA ] [+] EMBL CD082490 [ gcGGAAAATCATGAACGTAGTCTACGATTAGAACATGATCAACGAGCACGTATTCAAACGCGTATTAATGAAAAAGTCCTGAAAAAAGAAGGTACATGGATTGACTGGCAATATTTGCTACTCGCTGCAGATACATTAAGAAATTGTCGATATACTTTAAAGTATACTTATCCTCATGCATTTTATGGTGAAAAATTGGAACGTAAAGAGTTATTTGAATATCAGCAAGCTTTACTAGAAGCGGAAGTAGAAGATTTATCATGGAAAATAGAACATGCTGAAATAACAGATCGAGCAGATTTACAAAATAAAATGGATATTTGTGAAAAGCATCGTTTAACTTTGTTACAAGAATTTCTAACTAATTAAATCATATTCTCATTTCTTTTGTTTTTTTCTAATTCAGAAGAATTATTTATTTATTACCTTTATGTTAGTGATCTATAAGATTTCATTTACCTTCATCTCTTTTTTTTCTGCTACTTATCTATCTACTTACTTAGATAAGACAATGATACACACTAGCGGTGTTAACGATTACATAGCATCTTTTCTTTGTTTAAAATTTTAGTCTTATCCTTTTAATTACACACAGTCACTCTTCTGTTAATGTTTCTGGTACAATATTCATTAGTCTTCATGATGGTATCCTTTCTCTACTTATTTTCACTGTTGAGTGCANATAGACTCATTGAAACACATTAATCTTGGCTTCTGATNCATAGCGTGTGCTATTTGCCAAATTTGCTATGTCTTATTTTTATTATAATGTNATCTATCTTTACCAGTTACTATCGGNGATNTAATCATACTTGATATNCTCTAGAACACTATGGAATNCTCCTTGAATNNATATCAATCTCGATATA] consensusID : consensus_8738#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [AGTTGGCAGTACAACTTTGCCCTCGGAAATTGAGTTACTGATTCCCCCACTGAGTTACTTGGTATGGTAAGACTTAAAGAAATAGATTTTTCAGTCAATGTAGCTTGACTGGGTTGGTGCGGTAGGTAAGCCTGACCACCACGCCATGGTAACAGCTACAATCCGGATTTTCTGGTTACCATAACTAGGAACTACATAGCACATTTAGCTTCTCATTGTAGTTATAAATTCAAGTCATCGAGCTTGTAGTACTACAAACCAATGCTTATTCATTTTATTTGTATTTGTAATTCTCAGGTTAAATGATTTAACGTTTCGTATTTTTTCCAATGGTTTTAGAGTCATCCATCATTACGTTTTTGTGTCGGTCTGAGTTGTCCTGTTTTGATTTGTGCGCTTGAAGAACCAAAGGCACGGCGCGTTCAGTGCGAGCGGTGCCATGCAGAGTTCTGTTTTATGTGCTCGGAAGCATATCATGCTCCAACTAGTTGTGCAACTTTAAAGCATTGGCTTGTTAAGTGTCGAGATGATTCAGGAACAGCANATTACATGACAGCTCATACCAAAGATTGTCCATCATGTCACGTGTGTATCGAGAAAAAATGAA] [+] EMBL CD136974 [AGTTGGCAGTACAACTTTGCCCTCGGAAATTGAGTTACTGATTCCCCCACTGAGTTACTTGGTATGGTAAGACTTAAAGAAATAGATTTTTCAGTCAATGTAGCTTGACTGGGTTGGTGCGGTAGGTAAGCCTGACCACCACGCCATGGTAACAGCTACAATCCGGATTTTCTGGTTACCATAACTAGGAACTACATAGCACATTTAGCTTCTCATTGTAGTTATAAATTCAAGTCATCGAGCTTGTAGTACTACAAACCAATGCTTATTCATTTTATTTGTATTTGTAATTCTCAGGTTAAATGATTTAACGTTTCGTATTTTTTCCAATGGTTTTAGAGTCATCCATCATTACGTTTTTGTGTCGGTCTGAGTTGTCCTGTTTTGATTTGTGCGCTTGAAGAACCAAAGGCACGGCGCGTTCAGTGCGAGCGGTGCCATGCAGAGTTCTGTTTTATGTGCTCGGAAGCATATCATGCTCCAACTAGTTGTGCAACTTTAAAGCATTGGCTTGTTAAGTGTCGAGATGATTCAGGAACAGCANATTACATGACAGCTCATACCAAAGATTGTCCATCATGTCACGTGTGTATCGAGAAAAAATGAA] consensusID : consensus_8738#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 603 fasta sequence [ATTTGTGAAAAGCATCGTTTAACTTTGTTACAAGAATTTCTAACTAATTAAATCATATTCTCATTTCTTTTGTTTTTTTCTAATTCAGAAGAATTATTTATTTATTACCTTTATGTTAGTGATCTATAAGATTTCATTTACCTTCATCTCTTTTTTTTCTGCTACTTATCTATCTACTTACTTAGATAAGACAATGATACACACTAGCGGTGTTAACGATTACATAGCATCTTTTCTTTGTTTAAAATTTTAGTCTTATCCTTTTAATTACACACAGTCACTCTTCTGTTAATGTTTCTGGTACAATATTCATTAGTCTTCATGATGGTATCCTTTCTCTACTTATTTTCACTGTTGAGTGCAAATAGACTCATTGAAACACATTAAATCTTGGCTTCTGATTTCATAGCGTGTGCTATTTGCCAATTTTGCCTATGTCTTTATTTTTTATTATAAATGTTTATCTATTCTTTACCAGTTTTACTATCTGTGTGATTTTAATCATTAACTTTGATTATTCCTCTAAGATCTACTTATTGTAAATCTTTCTCTTTGATATTTATTTATCATATTCTTTCGTATAAATATTTGGTTAGTCGTTAA] [-] EMBL CD076087 [ATTTGTGAAAAGCATCGTTTAACTTTGTTACAAGAATTTCTAACTAATTAAATCATATTCTCATTTCTTTTGTTTTTTTCTAATTCAGAAGAATTATTTATTTATTACCTTTATGTTAGTGATCTATAAGATTTCATTTACCTTCATCTCTTTTTTTTCTGCTACTTATCTATCTACTTACTTAGATAAGACAATGATACACACTAGCGGTGTTAACGATTACATAGCATCTTTTCTTTGTTTAAAATTTTAGTCTTATCCTTTTAATTACACACAGTCACTCTTCTGTTAATGTTTCTGGTACAATATTCATTAGTCTTCATGATGGTATCCTTTCTCTACTTATTTTCACTGTTGAGTGCAAATAGACTCATTGAAACCCATTAAATCTTGGCTTCTGATTTCATAGCGTGTGCTATTTGCCAATTTTGCCTATGTCTTTATTTTTTATTATAAATGTTTATCTATTCTTTACCAGTTTTACTATCTGTGTGATTTTAATCATTAACTTTGATTATTCCTCTAAGATCTACTTATTGTAAATCTTTCTCTTTGATATTTATTTATCATATTCTTTCGTATAAATATTTGGTTAGTCGTTAA] [-] EMBL CD076286 [ CTAACTAATTAAATCATATTCTCATTTCTTTTGTGTTTTTCTAATTCAGAAGAATTATTTATTTATTACCTTTATGTTAGTGATCTATAAGATTTCATTTACCTTCATCTCTTTTTTTTCTGCTACTTATCTATCTACTTACTTAGATAAGACAATGATACACACTAGCGGTGTTAACGATTACATAGCATCTTTTCTTTGTTTAAAATTTTAGTCTTATCCTTTTAATTACACACAGTCACTCTTCTGTTAATGTTTCTGGTACAATATTCATTAGTCTTCATGATGGTATCCTTTCTCTACTTATTTTCACTGTTGAGTGCAAATAGACTCATTGAAACACATTAAATCTTGGCTTCTGATTTCATAGCGTGTGCTATTTGCCAATTTTGCCTATGTCTTTATTTTTTATTATAAATGTTTATCTATTCTTTACCAGTTTTACTATCTGTGTGATTTTAATCATTAACTTTGATTATTCCTCTAAGATCTACTTATTGTAAATCTTTCTCTTTGATATTTATTTATCATATTCTTTCGTATAAATATTTG ] [-] EMBL AA999636 [ GACAATGACACACACTACCGGTGTTAACGANTACATAGCAACTTTTCTTTGTTTAAAATTTTAGTCTTATCCTTTTAATTACACACAGTCACTCTTCTGTTAATGTTTCTGGTACAATATTCATTAGTCTTCATGATGGTATCCTTTCTCTACTTATTTTCACTGTTGAGTGCAAATAGACTCATTGAAACACATTAAATCTTGGCTTCTGATTTCATAGCGTGTGCTATTTGCCAATTTTGCCTATGTCTTTATNTTTTATTATAAATGTTTATCTATTCTTTACCAGTTTTACTATCTGTGTGATTTTAATCATTAACTTCGATTATTCCTCTAAGATCTACTTATTGTAAATCTTTCTCTTTGATATTTATTTATCATATTCTTTCGTATAAATATTTGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8738#0 CCGAGCCAANAATTCGGCACGAGGGCGAACAGCAAATTACATGACAGCTCATACCAAAGA 60 consensus_8738#2 ------------------------------------------------------------ consensus_8738#1 ------------------------------------------------------------ consensus_8738#0 TTGTCCATCATGTCATGTGTGTATCGAGAAAAATGAAGGTTGCAATCATATGAAATGCTC 120 consensus_8738#2 ------------------------------------------------------------ consensus_8738#1 ------------------------------------------------------------ consensus_8738#0 AATTTGTCACTACGAATTCTGCTGGGTGTGTTTAGGGGTTTGGAAATCACACGATGCAGA 180 consensus_8738#2 ------------------------------------------------------------ consensus_8738#1 ------------------------------------------------------------ consensus_8738#0 ATACTATTTTTGCAGCAAATATCAAGAGAATCCAGATTCTGCAAAAGAATCCGTACGAAC 240 consensus_8738#2 ------------------------------------------------------------ consensus_8738#1 ------------------------------------------------------------ consensus_8738#0 ACGTGCACGTGAATCCCTGGAACGCTACATGTTTTATTATGAACGATGGGAAAATCATGA 300 consensus_8738#2 ------------------------------------------------------------ consensus_8738#1 ------------------------------------------------------------ consensus_8738#0 ACGTAGTCTACGATTAGAACATGATCAACGAGCACGTATTCAAACGCGTATTAATGAAAA 360 consensus_8738#2 ------------------------------------------------------------ consensus_8738#1 ------------------------------------------------------------ consensus_8738#0 AGTCCTGAAAAAAGAAGGTACATGGATTGACTGGCAATATTTGCTACTCGCTGCAGATAC 420 consensus_8738#2 ------------------------------------------------------------ consensus_8738#1 ------------------------------------------------------------ consensus_8738#0 ATTAAGAAATTGTCGATATACTTTAAAGTATACTTATCCTCATGCATTTTATGGTGAAAA 480 consensus_8738#2 ------------------------------------------------------------ consensus_8738#1 ------------------------------------------------------------ consensus_8738#0 ATTGGAACGTAAAGAGTTATTTGAATATCAGCAAGCTTTACTAGAAGCGGAAGTAGAAGA 540 consensus_8738#2 ------------------------------------------------------------ consensus_8738#1 ------------------------------------------------------------ consensus_8738#0 TTTATCATGGAAAATAGAACATGCTGAAATAACAGATCGAGCAGATTTACAAAATAAAAT 600 consensus_8738#2 ------------------------------------------------------------ consensus_8738#1 ------------------------------AGTTGGCAGTACAACTTTGCCCTCGGAAAT 30 consensus_8738#0 GGATATTTGTGAAAAGCATCGTTTAACT--TTGTTACAAGAATTTCTAACTAATTAAATC 658 consensus_8738#2 ----ATTTGTGAAAAGCATCGTTTAACT--TTGTTACAAGAATTTCTAACTAATTAAATC 54 consensus_8738#1 TG--AGTTACTGATTCCCCCACTGAGTTACTTGGTATGGTAAGACTTAAAGAAATAGATT 88 * ** * * * * * * *** ** ** *** ** ** ** consensus_8738#0 ATATTCTCATTTCTTTTGTTTTTTTCTAATTCAGGAGAATTATTTATTTATTACCTTTAT 718 consensus_8738#2 ATATTCTCATTTCTTTTGTTTTTTTCTAATTCAGAAGAATTATTTATTTATTACCTTTAT 114 consensus_8738#1 TTTCAGTCAATGTAGCTTGACTGGGTTGGTGCGGTAGGTAAGCCTGACCACCACGCC-AT 147 * *** * * * * * * * ** * * ** ** consensus_8738#0 GTTAGTGATCTATAAGATTTCATTTACCTTCATCTCTTTTTTTTCTGCTACTTATC-TAT 777 consensus_8738#2 GTTAGTGATCTATAAGATTTCATTTACCTTCATCTCTTTTTTTTCTGCTACTTATC-TAT 173 consensus_8738#1 GGTAACAGC---TACAATCCGGATTTTCTGGTTACCATAACTAGGAACTACATAGCACAT 204 * ** ** ** ** ** * * * * **** ** * ** consensus_8738#0 CTACTTACTTAGATAAGACAATGATACACACTAGCGGTGTTAACG-ATTACATAGCATCT 836 consensus_8738#2 CTACTTACTTAGATAAGACAATGATACACACTAGCGGTGTTAACG-ATTACATAGCATCT 232 consensus_8738#1 TTAGCTTCTCATTGTAGTTATAAATTCAAGTCATCGAGCTTGTAGTACTACAAACCAATG 264 ** * ** * ** * ** ** * ** ** * * **** * ** consensus_8738#0 TTTCTTTGTTTAAAATTTTAGTCTTATCCTTTTAATTACACACAGTCACTCTTC-TGTTA 895 consensus_8738#2 TTTCTTTGTTTAAAATTTTAGTCTTATCCTTTTAATTACACACAGTCACTCTTC-TGTTA 291 consensus_8738#1 CTTATTCATTTTAT-TTGTATTTGTAATTCTCAGGTTAAATGATTTAACGTTTCGTATTT 323 ** ** *** * ** ** * ** * *** * * ** *** * ** consensus_8738#0 ATGTTTCTGGTACAATATTCATTAGTCTTCATGATGGTATCCTTTCTCTACTTATTTT-C 954 consensus_8738#2 ATGTTTCTGGTACAATATTCATTAGTCTTCATGATGGTATCCTTTCTCTACTTATTTT-C 350 consensus_8738#1 TTTCCAATGGTTTTAGAGTCATCCATCATTACGTTTTTGTGTCGGTCTGAGTTGTCCTGT 383 * **** * * **** ** * * * * * * * ** * * consensus_8738#0 ACTGTTGAGTGCANATAGACTCATTGAAACACATTAA-TCTTG-GCTTCTGATN-CATAG 1011 consensus_8738#2 ACTGTTGAGTGCAAATAGACTCATTGAAACACATTAAATCTTG-GCTTCTGATTTCATAG 409 consensus_8738#1 TTTGATTTGTGCGCTTGAAGAACCAAAGGCACGGCGCGTTCAGTGCGAGCGGTGCCATGC 443 ** * **** * * * *** * * ** * * *** consensus_8738#0 CGTGTGCTATTTGCCAAATTTGC-TATGTCTTA--TTTTTATTATAA-TGTN-ATCTAT- 1065 consensus_8738#2 CGTGTGCTATTTGCCAATTTTGCCTATGTCTTTATTTTTTATTATAAATGTTTATCTATT 469 consensus_8738#1 AGAGTTCTGTTTTATGTGCTCGGAAGCATATCATGCTCCAACTAGTTGTGCAACTTTAAA 503 * ** ** *** * * * * * * ** ** * ** consensus_8738#0 -CTTTACCAGTT--ACTATCGGNGATNT-----AATCATACTTGATATNCTCTAGAACAC 1117 consensus_8738#2 -CTTTACCAGTTTTACTATCTGTGTGAT-----TTTAATCATTAACTTTGATTATTCCTC 523 consensus_8738#1 GCATTGGCTTGTTAAGTGTCGAGATGATTCAGGAACAGCANATTACATGACAGCTCATAC 563 * ** * * * * ** * * * * * consensus_8738#0 TATGGAATNCTCCTTGAATNNATATCAATCTCGATATA---------------------- 1155 consensus_8738#2 TAAGATCTACTTATTGTAAATCTTTCT-CTTTGATATTTATTTATCATATTCTTTCGTAT 582 consensus_8738#1 CAAAGATTGTCCATCATGT-CACGTGTGTATCGAGAAAAAATGAA--------------- 607 * * * * * ** * consensus_8738#0 --------------------- consensus_8738#2 AAATATTTGGTTAGTCGTTAA 603 consensus_8738#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||