These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8749#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1073 fasta sequence [TTTTTTTTTTTTTTTTTTTTTAATGCATATGGTTTATTTTACAGCCATAATCTTCTAGCAGACGTCTTCATACTTTAGTGCTATCAATAAGTAAACTATTGTACATAATTTGAAGGTTTGTGAACAGTAAATGTTTTTAAAAAACTATCTTCAGGAAGATGAACTGAACTCTTCTGCAACTGCACACGCAGCGCTATAGACAGCATCATTCAACCCAACCCCATCGTACGAATTACCAACAA-GATATATACCACTTCGGCCAGAACTATGGCCACTCGAAATTCGCCGAATGCCGTTGCGCAAATTAGCCATATTAGTTAAATGACCTGGAGGATACTGGGGAATACAGTTACGGAGAATACTAATATGACGACCAACAATGACCGGATCCGGTATTTTAAGATGGTTTATAAGGACGGTTTTTGCAACTTTTTCAATGGTGTTTTCCAGGTGCTCTGAGGAACCTAAACTTGTGGAGGCTTCGAGCCATTCACGAAGTGGTTTCATCATCACTGTATATCGTAATTTTTTATTAAATCCATCCAATTTCGGGAATGCAAAGGAATCGTATATTACACCCAAAATATGCTCATCTTCCGTACGCGGTACTAAGTGCCCGAACCCACGTACTAAGGGAGT-AAAGGAGTCATCTATTTCTAGGACAGCACTGACAACACTTCCCCATGGAATACAGTCGGGTTTCAGATAGCTTAGAATATCAGTAGTCAGTATGTTTTCCAAAATACTTGCTGTAGTGAAGGATGGGCAGCAAAAAAAGACTATATCAGCTGTATTTTTTTCTTTGTCGTTACCATTATCACCGATGCTCTTGTAAGTATACTCAAAGCAACCA-TTACAGATTTTAATTTTTCAACGG-ACACCTCGTACTGCAAATCGATATGTGGATGTTTCCTACTTAAATGATCTACAATAGTGTCAATCAATGTCTCCAATCCACCTGACAAAGTCCAAGCAATCGCATCAGATGGAATCAAGTTATTCAGTTGCGGGAGTTTGTCGTCAATCATATTTGGTATAACGATACGATCTAAAGATCGGTTTATCCGTGAAAG] [+] EMBL AI395053 [TTTTTTTTTTTTTTTTTTTTTAATGCATATGGTTTATTTTACAGCCATAATCTTCTAGCAGACGTCTTCATACTTTAGTGCTATCAATAAGTAAACTATTGTACATAATTTGAAGGTTTGTGAACAGTAAATGTTTTTAAAAAACTATCTTCAGGAAGATGAACTGAACTCTTCTGCAACTGCACACGCAGCGCTATAGACAGCATCATTCAACCCAACCCCATCGTACGAATTACCAACAA GATATATACCACTTCGGCCAGAACTATGGCCACTCGAAATTCGCCGAATGCCGTTGCGCAAATTAGCCATATTAGTTAAATGACCTGGAGGATACTGGGGAATACAGTTACAGAGAATACTAATATGACGACCAACAATGA CGGATCCGGTATTTTAAGATGGg ] [+] EMBL CD117647 [ AGCCATAATCTTCTAGCAGACGTCTTCATACTTTAGTGCTATCAATAAGTAAACTATTGTACATAATTTGAAGGTTTGTGAACAGTAAATGTTTTTAAAAAACTATCTTCAGGAAGATGAACTGAACTCTTCTGCAACTGCACACGCAGCGCTATAGACAGCATCATTCAACCCAACCCCATCGTACGAATTACCAACAA GATATATACCACTTCGGCCAGAACTATGGCCACTCGAAATTCGCCGAATGCCGTTGCGCAAATTAGCCATATTAGTTAAATGACCTGGAGGATACTGGGGAATACAGTTAAGGAGAATACTAATATGACGACCAACAATGACCGGATCCGGTATTTTAAGATGGTTTATAAGGACGGTTTTTGCAACTTTTTCAATGGTGTTTTCCAGGTGCTCTGAGGAACCTAAACTTGTGGAGGCTTCGAGCCATTCACGAAGTGGTTTCATCATCACTGTATATCGTAATTTTTTATTAAATCCATCCAATTTCGGGAATGCAAAGGAATCGTATATTACACCCAAAATAT ] [+] EMBL CD070006 [ ACCAACAACGATATATACCACTTCGGCCAGAACTATGGCCACTCGAAATTCGCCGAATGCCGTTGCGCAAATTAGCCATATTAGTTAAATGACCTGGAGGATACTGGGGAATACAGTTACGGAGAATACTAATATGACGACCAACAATGACCGGATCCGGTATTTTAAGATGGTTTATAAGGACGGTTTTTGCAACTTTTTCAATGGTGTTTTCCAGGTGCTCTGAGGAACCTAAACTTGTGGAGGCTTCGAGCCATTCACGAAGTGGTTTCATCATCACTGTATATCGTAATTTTTTATTAAATCCATCCAATTTCGGGAATGCAAAGGAATCGTATATTACACCCAAAATATGCTCATCTTCCGTACGCGGTACTAAGTGCCCGAACCCACGTACTAAGGGAGTAAAAGGAGTCATCTATTTCTAGGACAGCACTGACAACACTTCCCCATGGAATACAGTCGGGTTTCAGATAGCTTAGAATATCAGTAGTCAGTATGTTTTCCAAAATACTTGC ] [-] EMBL CD083643 [ TACTAATATGACGACCAACAATGACCGGATCCGGTATTTTAAGATGGTTTATAAGGACGGTTTTTGCAACTTTTTCAATGGTGTTTTCCAGGTGCTCTGAGGAACCTAAACTTGTGGAGGCTTCGAGCCATTCACGAAGTGGTTTCATCATCACTGTATATCGTAATTTTTTATTAAATCCATCCAATTTCGGGAATGCAAAGGAATCGTATATTACACCCAAAATATGCTCATCTTCCGTACGCGGTACTAAGTGCCCGAACCCACGTACTAAGGGAGT AAAGGAGTCATCTATTTCTAGGACAGCACTGACAACACTTCCCCATGGAATACAGTCGGGTTTCAGATAGCTTAGAATATCAGTAGTCAGTATGTTTTCCAAAATACTTGCTGTAGTGAAGGATGGGCAGCAAAAAAAGACTATATCAGCTGTATTTTTTTCTTTGTCGTTACCATTATCACCGATGCTCTTGTAAGTATACTCAAAGCAACCA TTACAGATTTTAATTTTTCAACGG ACACCTCGT ] [+] EMBL CD150704 [ ATGACGGCCAACAATGACCGGATCCGGTATTTTAAGATGGTTTATAAGGACGGTTTTTGCAACTTTTTCAATGGTGTTTTCCAGGTGCTCTGGGGAACCTAAACTTGTGGAGGCTTCGAGCCATTCACGAAGTGGTTTCATCATCACTGTATATCGTAA TTTTTATTAAATCCATCCAATTTCGGGAATGCAAAGGAATCGTATATTACACCCAAAA ] [-] EMBL CD185728 [ TAAATCCATCCAATTTCGGGAATGCAAAGGAATCGTATATTACACCCAAAATATGCTCATCTTCCGTACGCGGTACTAAGTGCCCGAACCCACGTACTAAGGGAGT AAAGGAGTCATCTATNTTTAGGACAGCACTGACAACACTTCCCCATGGAATACAGTCGGGTTTCAGATAGCTTAGAATATCAGTAGTCAGTATGTTTTCCAAAATACTTGCTGTAGTGAAGGATGGGCAGCAAAAAAAGACTATATCAGCTGTATTTTTTTCTTTGTCGTTACCATTATCACCGATGCTCTTGTAAGTATACTCAAAGCAACCATTTACAGATTTTAATTTTTCAACGGAACA GTTTAACTGCAAATCGATATGTGGATGTTTCCTACTTAAATGATCTACAATAGTGTCAATCAATGTCTCCAATCCACCTGACAAAGTCCAAGCAATCGCATCAGATGGAATCAAGTTATTCAGTTGCGGGAGTTTGTCGTCAATCATATTTGGTATAACGATACGATCTAAAGATCGGTTTATCCGTGAAAG] consensusID : consensus_8749#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [TTTTTTTTTTTTTTTTTTAACAAAACACTTAGTGGGGATTTATTTCCACTATATGATAACCATTCTAATGATAAACTACAATTTTGCAAGATCCTACTAAGTGCTGAAGAAAAGGATGAAAATGTGGTTTAATATAAAAACCGGAAACAGGTTTTTTTTTAATGCATATGGTTTATTTTACAGCCATAATCTTCTAGCAGACGTCTTCATACTTTAGTGCTATCAATAAGTAAACTATTGTACATAATTTGAAGGTTTGTGAACAGTAAATGTTTTTAGAATACTATCTTCCA] [+] EMBL AI394948 [TTTTTTTTTTTTTTTTTTAACAAAACACTTAGTGGGGATTTATTTCCACTATATGATAACCATTCTAATGATAAACTACAATTTTGCAAGATCCTACTAAGTGCTGAAGAAAAGGATGAAAATGTGGTTTAATATAAAAACCGGAAACAGGTTTTTTTTTAATGCATATGGTTTATTTTACAGCCATAATCTTCTAGCAGACGTCTTCATACTTTAGTGCTATCAATAAGTAAACTATTGTACATAATTTGAAGGTTTGTGAACAGTAAATGTTTTTAGAATACTATCTTCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8749#0 TTTTTTTTTTTTTTTTTTTTTAATGCATATGGTTTAT-TTTACAGCCATAATCTTCTAGC 59 consensus_8749#1 TTTTTTTTTTTTTTTTTTAACAAAACACTTAGTGGGGATTTATTTCCACTATATGATAAC 60 ****************** ** ** * ** **** *** ** * ** * consensus_8749#0 AGACGTCTTCATACTTTAGTGCTATCAATAAGTAAACTATTGTACATAATTTGAAGGTTT 119 consensus_8749#1 ---CATTCTAATGATAAA---CTACAATTTTGCAAG--ATCCTACTAAGTGCTGAAGAAA 112 * * * ** * * *** * * * ** ** *** * * * * consensus_8749#0 GTGAACAGTAAATGTTTTTAAAAAACTATCTTCAGGAAGATGAACTGAACTCTTCTGCA- 178 consensus_8749#1 AGGATGAAAATGTGGTTTAATATAAAAACC-----GGAAACAGGTTTTTTTTTAATGCAT 167 ** * * ** *** * * ** * * * * * * * * **** consensus_8749#0 ACTGCACACGCAGC-GCTATAGACAGC-ATCATTCAACCCAACCCCATCGTACGAATTAC 236 consensus_8749#1 ATGGTTTATTTTACAGCCATAATCTTCTAGCAGACGTCTTCATACTTTAGTGCTATCAAT 227 * * * * ** *** * * * ** * * * * * ** * * * consensus_8749#0 CAACAAGATATATACCACTTCGGCCAGAACTATGGCCACTCGAAATTCGCCGAATGCCGT 296 consensus_8749#1 AAGTAAACTATTGTACATAATTTGAAGGTTTGTGAACAGTAAATGTTTTTAGAATACTAT 287 * ** *** ** ** * ** ** * * ** **** * * consensus_8749#0 TGCGCAAATTAGCCATATTAGTTAAATGACCTGGAGGATACTGGGGAATACAGTTACGGA 356 consensus_8749#1 CTTCCA------------------------------------------------------ 293 ** consensus_8749#0 GAATACTAATATGACGACCAACAATGACCGGATCCGGTATTTTAAGATGGTTTATAAGGA 416 consensus_8749#1 ------------------------------------------------------------ consensus_8749#0 CGGTTTTTGCAACTTTTTCAATGGTGTTTTCCAGGTGCTCTGAGGAACCTAAACTTGTGG 476 consensus_8749#1 ------------------------------------------------------------ consensus_8749#0 AGGCTTCGAGCCATTCACGAAGTGGTTTCATCATCACTGTATATCGTAATTTTTTATTAA 536 consensus_8749#1 ------------------------------------------------------------ consensus_8749#0 ATCCATCCAATTTCGGGAATGCAAAGGAATCGTATATTACACCCAAAATATGCTCATCTT 596 consensus_8749#1 ------------------------------------------------------------ consensus_8749#0 CCGTACGCGGTACTAAGTGCCCGAACCCACGTACTAAGGGAGTAAAGGAGTCATCTATTT 656 consensus_8749#1 ------------------------------------------------------------ consensus_8749#0 CTAGGACAGCACTGACAACACTTCCCCATGGAATACAGTCGGGTTTCAGATAGCTTAGAA 716 consensus_8749#1 ------------------------------------------------------------ consensus_8749#0 TATCAGTAGTCAGTATGTTTTCCAAAATACTTGCTGTAGTGAAGGATGGGCAGCAAAAAA 776 consensus_8749#1 ------------------------------------------------------------ consensus_8749#0 AGACTATATCAGCTGTATTTTTTTCTTTGTCGTTACCATTATCACCGATGCTCTTGTAAG 836 consensus_8749#1 ------------------------------------------------------------ consensus_8749#0 TATACTCAAAGCAACCATTACAGATTTTAATTTTTCAACGGACACCTCGTACTGCAAATC 896 consensus_8749#1 ------------------------------------------------------------ consensus_8749#0 GATATGTGGATGTTTCCTACTTAAATGATCTACAATAGTGTCAATCAATGTCTCCAATCC 956 consensus_8749#1 ------------------------------------------------------------ consensus_8749#0 ACCTGACAAAGTCCAAGCAATCGCATCAGATGGAATCAAGTTATTCAGTTGCGGGAGTTT 1016 consensus_8749#1 ------------------------------------------------------------ consensus_8749#0 GTCGTCAATCATATTTGGTATAACGATACGATCTAAAGATCGGTTTATCCGTGAAAG 1073 consensus_8749#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||