These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8754#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 923 fasta sequence [CCTCGAGGACAGATCGGCACGAGGAGTTACGTGCCTGCAGTTAGTTGTATCATGGAATCAGCTGAGACAAAGCCAAAGAAATTAAACAAACCAAAAGACACACCTTTTCACCAGCAACGTCTCAAGTCATGGAGACCGATTCTAACTGCTAGAAATGCGTTTCCAATATTTCTCACTATTGGGTTATTATCTATACCAGTGGGTATAGTTTTACTTACTTTCTCTAATAGCGTCTCAGAAGTTGTTGTGGAGTATACTCACTGCGAAGATACCGTACGCCATACACGATGTTCTGAGTTGGTCAGACTTCCTGAGTTCTATAGAACATATAATATATGTTCATGCAAAGTCGAATTTGAACTTAAGGAAGAATTCAAGGGTCAAGTGTACTTTTACTATGGCCTGTCAAATTTCTTCCAAAACCATCGCCGCTATGTCATATCAAAGGATGATTACCAGTTACATGGTTCAGTAGAAACTCCAAAAGCAAGTTGTGAACCGTATCGATTTGATCCGAGTGGAAAAGTCTACGCCCCCTGTGGAGCTATTGCAATGAGCTTATTCAATGACTCGTTTACTCTAACATATCTTGGTAAAAGCTCCGAACCCCTTGCTAAACCATTACAAGTTCCAATGACCAATAAGGGAATCGCTTGGCGTACTGATGTTGAAGAAAAATTTGGTAAACCACCAGCTGATTCATGGGCAAACACAGTAAAACCACTTAGTTGGAAAAAGTCAGCTCTTGAACGCTCATCTGGTGCATATAGCGAAGATGAAGAGTTATTAGTATGGATGCGTGTTTCAGCACTACCAACATTTCGTAAATTATATCGTCTAATCACTCATGTCAACGCTTTTTCAAACGGTCTGCCAGCTGGAATTTATAGTGTTAATATTGAGTACTGTGAGTACTGATTTAC] [+] EMBL CD084131 [CCTCGAGGACAGATCGGCACGAGGAGTTACGTGCCTGCAGTTAGTTGTATCATGGAATCAGCTGAGACAAAGCCAAAGAAATTAAACAAACCAAAAGACACACCTTTTCACCAGCAACGTCTCAAGTCATGGAGACCGATTCTAACTGCTAGAAATGCGTTTCCAATATTTCTCACTATTGGGTTATTATCTATACCAGTGGGTATAGTTTTACTTACTTTCTCTAATAGCGTCTCAGAAGTTGTTGTGGAGTATACTCACTGCGAAGATACCGTACGCCATACACGATGTTCTGAGTTGGTCAGACTTCCTGAGTTCTATAGAACATATAATATATGTTCATGCAAAGTCGAATTTGAACTTAAGGAAGAATTCAAGGGTCAAGTGTACTTTTACTATGGCCTGTCAAATTTCTTCCAAAACCATCGCCGCTATGTCATATCAAAGGATGATTACCAGTT ] [-] EMBL CD138126 [ AAATTAAACAAACCAAAAGACACACCTTTTCACCAGCAACGTCTCAAGTCATGGAGACCGATTCTAACTGCTAGAAATGCGTTTCCAATATTTCTCACTATTGGGTTATTATCTATACCAGTGGGTATAGTTTTACTTACTTTCTCTAATAGCGTCTCAGAAGTTGTTGTGGAGTATACTCACTGCGAAGATACCGTACGCCATACACGATGTTCTGAGTTGGTCAGACTTCCTGAGTTCTATAGAACATATAATATATGTTCATGCAAAGTCGAATTTGAACTTAAGGAAGAATTCAAGGGTCAAGTGTATTTTTACTATGGCCCGTCAAATTTCTTCCAAAACCATCGCCGCTATGTCATATCAAAGGATGATTACCAGTTACATGGTTCAGTAGAAACTCCAAAAGCAAGTTGTGAACCGTATCGATTTGATCCG ] [+] EMBL CD063719 [ ACTGCGAAGAT CGTACGCCATACACGATGTTCTGAGTTGGTCAGACTTCCTGAGTTCTATAGAACATAT ATATATGTTCATGCAAAGTCGAATTTGAACTTAAGGAAGAATTCAAGGGTCAAGTGTACTTTTACTATGGCCTGTCAAATTTCTTCCAAAACCATCGCCGCTATGTCATATCAAAGGATGATTACCAGTTACATGGTTCAGTAGAAACTCCAAAAGCAAGTTGTGAACCGTATCGATTTGATCCGAGTGGAAAAGTCTACGCCCCCTGTGGAGCTATTGCAATGAGCTTATTCAATGACTCGTTTACTCTAACATATCTTGGTAAAAGCTCCGAACCCCTTGCTAAACCATTACAAGTTCCAATGACCAATAAGGGAATCGCTTGGCGTACTGATGTTGAAGAAAAATTTGGTAAACCACCAGCTGATTCATGGGCAAACACAGTAAAACCACTTAGTTGG ] [-] EMBL CD149596 [ AGTGTATTTTTACTATGGCCTGTCAAATTTCTTCCAAAACCATCGCCGCTATGTCATATCAAAGGATGATTACCAGTTACATGGTTCAGTAGAAACTCCAAAAGCAAGTTGTGAACCGTATCGATTTGATCCGAGTGGAAAAGTCTACGCCCCCTGTGGAGCTATTGCAATGAGCTTATTCAATGACTCGTTTACTCTAACATATCTTGGAAAAAGCTCCGAACCCCTTGCTAAACCATTACAAGTTCCAATGACCAATAAGGGAATCGCTTGGCATACTGATGTTGAAGAAAAATTTGGTAAACCACCAGCTGATTCATGGGCAAACACAGTAAAACCACTTAGTTGGAAAAAGTCAGCTCTTGAACGCTCATCTGGTGCATATAGCGAAGATGAAGAGTTATTAGTATGGATGCGTGTTTCAGCACTACCAACATTTCGTAAATTATATCGTCTAATCACTCATGTCAACGCTTTTTCAAACGGTCTGCCAGCTGGAATTTATAGTGTTAATATTGAGTACTGTGAGTACTGATTTAC] consensusID : consensus_8754#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 691 fasta sequence [GGGCCTTATTCGGCACGCAGGCCATAAGGGAATCGCTTGGCGTACTGATGTTGAAGAAAAATTTGGTAAACCACCAGCTGATTCATGGGCAAACACAGTAAAACCACTTAGTTGGAAAAAGTCAGCTCTTGAACGCTCATCTGGTGCATATAGCGAAGATGAAGAGTTATTAGTATGGATGCGTGTTTCAGCACTACCAACATTTCGTAAATTATATCGTCTAATCACTCATGTCAACGCTTTTTCAAACGGTCTGCCAGCTGGAATTTATAGTGTTAATATTGAGTACTCTTATCCCGTCACTCAATTTGGTGGCACTAAACGAATTATACTGTCTACTATGAGTTGGGTAGGTGGCCGAAATCCAACATTAGGGATATCCTATATTGTTATGGGCAGTGTGGGTCTTATTTTAGGTCTCATATTTTTCATTCTTCACTTTCATACCATGGAGCATTGATAACCTAGCGCTTGGAAATATTAAACCATTTTCCGGACGAAAACTTGGTAATCATTCCATAAGAAGTGAAGTGCCTTTTAGTGA-ATATTTTGAAAGACCCTTTATGAAGTATTTTTTAATTATAAC-TTTAATTCTTTATGGATTAAGAATATTC-CTCCCTTTAAAAAC-AACATATGAGATTTTAC-TTTAAAAGTGA-ATTTCCCAGAATTTTGG-ATAAAATACCGGGATTGT] [+] EMBL CD081510 [GGGCCTTATTCGGCACGCAGGCCATAAGGGAATCGCTTGGCGTACTGATGTTGAAGAAAAATTTGGTAAACCACCAGCTGATTCATGGGCAAACACAGTAAAACCACTTAGTTGGAAAAAGTCAGCTCTTGAACGCTCATCTGGTGCATATAGCGAAGATGAAGAGTTATTAGTATGGATGCGTGTTTCAGCACTACCAACATTTCGTAAATTATATCGTCTAATCACTCATGTCAACGCTTTTTCAAACGGTCTGCCAGCTGGAATTTATAGTGTTAATATTGAGTACTCTTATCCCGTCACTCAATTTGGTGGCACTAAACGAATTATACTGTCTACTATGAGTTGGGTAGGTGGCCGAAATCCAACATTAGGGATATCCTATATTGTTATGGGCAGTGTGGGTCTTATTTTAGGTCTCATATTTTTCATTCTTCACTTTCATACCATGGAGCATTGATAACCTAGCGCTTGGAAATATTAAACCATTTTCCGGACGAAAACTTGGTAATCATTCCATAAGAAGTGAAGTGCCTTTTAGTGA ATATTTTGAAAGACCCTTTATGAAGTATTTTTTAATTATAAC TTTAATTCTTTATGGATTAAGAATATTC CTCCCTTTAAAAAC AACATATGAGATTTTAC TTTAAAAGTGA ATTTCCCAGAATTTTGG ATAAAATACCGGGATT ] [-] EMBL CD075334 [ ATCTGGTGCATATAGCGAAGATGAAGAGTTATTAGTATGGATGCGTGTTTCAGCACTACCAACATTTCGTAAATTATATCGTCTAATCACTCATGTCAACGCTTTTTCAAACGGTCTGCCAGCTGGAATTTATAGTGTTAATATTGAGTACTCTTATCCCGTCACTCAATTTGGTGGCACTAAACGAATTATACTGTCTACTATGAGTTGGTTAGGTGGCCGAAATCCAACATTAGGAATATCCTATATTGTTATGGGCAGTGTGGGTCTTATTTTAGGTCTCATATTTTTCATTCTTCACTTTCATACAATGAAGCATCGATAACCTAGCGCTCGTAAATATCAAACAATTTTCCGTACGAAAACTTGTTAATCATTCCATAAGATGTGAAGTGCCTTTTAGTGATATATTTTGAAGGACCCTTTATGAAGTATTTTTTATTTATAACTTTTATTTCTTTATGAATTAGTAATATTCACT CCTTTAAAAACAAACATATGAGTTTTTACTTTTAAATGTGATATTTCCCAGATTTTTGGTATAATATACTGTTATTGT] consensusID : consensus_8754#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence [TTTTTTTTTTTTTTTTGAAACATATACAATAACAGTATATTATACCAAAAATCTGGGAAATATCACATTTAAAAGTAAAAACTCATATGTTTGTTTTTAAAGGAGTGAATATTACTAATTCATAAAGAAATAAAAGTTATAAATAAAAAATACTTCATAAAGGGTCCTTCAAAATATATCACTAAAAGGCACTTCACATCTTATGGAATGATTAACAAGTTTTCGTACGGAAAATTGTTTGATATTTACGAGCGCTAGGTTATCGATGCTTCATTGTATGAAAGTGAAGAATGAAAAATATGAGACCTAAAATAAGACCCACACTGCCCATAACAATATAGGATATTCCTAATGTTGGTTTCGCGCAACCTAACAACTCATAGTAGACAGTATAATCCTTTAAGTGCACCAAAT] [+] EMBL AI395470 [TTTTTTTTTTTTTTTTGAAACATATACAATAACAGTATATTATACCAAAAATCTGGGAAATATCACATTTAAAAGTAAAAACTCATATGTTTGTTTTTAAAGGAGTGAATATTACTAATTCATAAAGAAATAAAAGTTATAAATAAAAAATACTTCATAAAGGGTCCTTCAAAATATATCACTAAAAGGCACTTCACATCTTATGGAATGATTAACAAGTTTTCGTACGGAAAATTGTTTGATATTTACGAGCGCTAGGTTATCGATGCTTCATTGTATGAAAGTGAAGAATGAAAAATATGAGACCTAAAATAAGACCCACACTGCCCATAACAATATAGGATATTCCTAATGTTGGTTTCGCGCAACCTAACAACTCATAGTAGACAGTATAATCCTTTAAGTGCACCAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8754#0 CCTCGAGGACAGATCGGCACGAGGAGTTACGTGCCTGCAGTTAGTTGTATCATGGAATCA 60 consensus_8754#1 ------------------------------------------------------------ consensus_8754#2 ------------------------------------------------------------ consensus_8754#0 GCTGAGACAAAGCCAAAGAAATTAAACAAACCAAAAGACACACCTTTTCACCAGCAACGT 120 consensus_8754#1 ------------------------------------------------------------ consensus_8754#2 ------------------------------------------------------------ consensus_8754#0 CTCAAGTCATGGAGACCGATTCTAACTGCTAGAAATGCGTTTCCAATATTTCTCACTATT 180 consensus_8754#1 ------------------------------------------------------------ consensus_8754#2 ------------------------------------------------------------ consensus_8754#0 GGGTTATTATCTATACCAGTGGGTATAGTTTTACTTACTTTCTCTAATAGCGTCTCAGAA 240 consensus_8754#1 -GGGCCTTATTCGGCACGCAGGCCATAAGGGAA-TCGCTTGGCGTACTGATGTTGAAGAA 58 consensus_8754#2 ------------------------------------------------------------ consensus_8754#0 GTTGTTGTGGAGTATACTCACTGCGAAGATACCGTACGCCATACACGATGTTCTGAGTTG 300 consensus_8754#1 AAATTTG----GTAAACCACCAGCTGATTCATGGG----CAAACACAGTAAAACCACTTA 110 consensus_8754#2 ------------------------------------------------------------ consensus_8754#0 GTCAGACTTCCTGAGTTCTATAGAACATATAATATATGTTCATGCAAAGTCGAATTTGAA 360 consensus_8754#1 GTTGGAAAAAGTCAGCTCTTGAACGCTCATCTGGTGCATATA-GCGAAGATGAA---GAG 166 consensus_8754#2 ------------------------------------------------------------ consensus_8754#0 CT-TAAGGAAGAATTCAAGGGTCAAGTGTACTTTTACTATGGCCTGTCAAATTTCTTCCA 419 consensus_8754#1 TTATTAGTATGGATGCGTGTTTCA---GCACTACCAACATTTCGTAAATTATATCGTCTA 223 consensus_8754#2 -------------------------------------------TTTTTTTTTTTTTTTTG 17 * * * * consensus_8754#0 AAACCATCGCCGCTATGTCATATCAAAGGATGATTACCAGTTACATGGTTCAGTAGAAAC 479 consensus_8754#1 ATCAC-TCATGTCAACGCTTTTTCAAACGGT--CTGCCAGCTGGAATTTATAGTGTTAAT 280 consensus_8754#2 AAACATATACAATAACAGTATATTATACCAA--AAATCTGGGAAATATCACATT--TAAA 73 * * * * * * * * * * * ** consensus_8754#0 TCCAAAAGCAAGTTGTGAACCGTATCGATTTGATCCGAGTGGAAAAGTC-TAC-GCCCCC 537 consensus_8754#1 ATTGAGTACTCTTATCCCGTCAC-TCAATTTGGTGGCACTAAACGAATTATACTGTCTAC 339 consensus_8754#2 AGTAAAAACTCATA-TGTTTGTTTTTAAAGGAGTGAATATTACTAATTCATAAAGAA--- 129 * * * * * * * * * ** * consensus_8754#0 TGTGGAGCTATTGCAATGAGCTTATTCAATGACTCGTTTACTCTAACATATCT-TGGTAA 596 consensus_8754#1 TATGAGTTGGGTAGGTGGCCGAAATCCAACATTAGGGATATCCTA---TATTG-TTATGG 395 consensus_8754#2 -ATAAAAGTTATAAATAAAAAATACTTCATAAAGGGTCCTTCAAAATATATCACTAAAAG 188 * * * * * * *** * consensus_8754#0 AAGCTCCGAACCCCTTGCTAAACCATTACAAGTTCCAATGACCAATAAGGGAATCGCTTG 656 consensus_8754#1 GCAGTGTGGGTCTTATTTTAGGTC-TCATATTTTTCATTCTTCACTTTC---ATACCATG 451 consensus_8754#2 GCACTTCACATCTTATGGAATGAT-TAACAAGTTTTCGTACGGAA------AATTGTTTG 241 * * * * * * * ** * * ** ** consensus_8754#0 GCGTACTGATGTTGAAGAAAAATTTGGTAAACCACCAGCTGATTCATGGGCAAACACAGT 716 consensus_8754#1 GAGCATTGATA---ACCTAGCGCTTGG-AAATATTAAACCATTTTCCGGACGAAAACTTG 507 consensus_8754#2 A--TATTTACG-------AGCGCTAGGTTATCGATGCTTCATTGTATGAAAGTGAAGAAT 292 * * * * * ** * * * * consensus_8754#0 AAAACCACTTAGTTGGAAAAAGTCAGCTCTTGAACGCTCATCTGGTGCATATAGCGAAGA 776 consensus_8754#1 GTAATCATTCCATAAGAAGTGAAGTGCCTTTTAGTGAATATTTTG---AAAGACCCTTTA 564 consensus_8754#2 GAAA--AATATGAGACCTAAAATAAGACCCACACTGCCCATAACA---ATATAGGATATT 347 ** * * * * * ** * * * consensus_8754#0 TGAAGAGTTATTAGTATGGATGCGTGTTTCAGCACTACCAACATTTCGTAAATTATATCG 836 consensus_8754#1 TGAAGTATTTTTTAATTATA-----ACTTTAATTCTTTATGGATTAAGAATATTCCTCCC 619 consensus_8754#2 CCTAATGTTGGTTTCGCGCA-----ACCTAACAACTCATAGTAGACAGTATA----ATCC 398 * ** * * * * ** * * * * * consensus_8754#0 TCTAATCACT-CATGTCAACGCTTTTTCAAACGGTCTGCCAGCTGGAATTTATAGTGTTA 895 consensus_8754#1 TTTAAAAACAACATATGAGATTTTACTTTAAAAGTGAATTTCCCAGAATTT-TGGATAAA 678 consensus_8754#2 TTTAAGTGCACCAAAT-------------------------------------------- 414 * *** * ** * consensus_8754#0 ATATTGAGTACTGTGAGTACTGATTTAC 923 consensus_8754#1 ATACCGGG-ATTGT-------------- 691 consensus_8754#2 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||