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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8761#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1128 fasta sequence
[AGGTTATATTTATATAAAAACAAGAGGATTTCCAAATCCCCTTGAGGATCATTCCTGTACAACGTTATGAGATGTTATTGCTGGTAAAATCAATAATATCAGGATCTAGCCATACCAGTAAATGAAAATGTTGGTCGAATGCGTTTTGATAAAGCTTTTTCTGTTTCCTGTTTACGTTTGGCTTGAATTTCCATAAGTTCTTCATGCTTTTCACGGAAGAAGGCTAAAGGGTCATCAAACTCTCTATAGTAATCTAGCACAAGGCGAACATCATCGACACTCCCCATTGCAATCATTCTTAGGAAGGCAGCCAAGTCTATCAATTCTCTATCTGACTCATCGCCATTCCAACGTTNTATAATCAGTGAATTGCGTGGTTGCAACTGAGCTGCAGCAGGGTCCCAATCAACGAACACCACACGGGAGAGATCTCTATTAAGACATGACAAATCCTTGATATGTTTTCCTCCTTTATAGCGAGTTGCTTCGCGAAACAGCCGGAAGTGAATAAACTGTCCTTGAGGATCCATCTGAGCCAAGACAGGACCTCCAATCATTACTGATTCATTTGTATAGACAACAACCTCATAGTGAGGAGATAGCTGTTGCAAAAACAAATCTAACGCTGCTCTTTTCTTAAAGCGCCAACCTGAGCGGAACTTCCAATCAGGATGAACAAGCACATCGGTCATCTCCAGAACAAGAGTATATGGTGGTTGGTAATATGGGGGTTGTACTGGATCTGGAAGGAGTTTCTCACTAACAGGATCCTTTATGCTTTGGTTGAATTCAAGCATAGAACTGAACGTTCGACAAAGGTAACCCCAGATAATTGGTTTTCGACTAAAATTGTCTTCAATTTCGACTCCGTTATCATCCTTTTTCGGAGGACCCCAAGTAGCCACGGCAAACCCAACCGCAAACAAACCGGAACATGCCAAAGTAAAACAACCTATTTTCCATGCATTTTTCTCACTCCACCAAGACTGTTTAGATTTATCTTCTGATGAATCGT-TTGAGCCTATGGAGTAATATGCACTATATTGCTTGAAATAAGTCCACCTATCACATCTGTTCAGGGCGAAACGTCGCGTTGCTGATAGAAGCATCAGTTGCGGATCACGTTCC]
[+] EMBL AI977046 [AGGTTATATTTATATAAAAACAAGAGGATTTCCAAATCCCCTTGAGGATCATTCCTGTACAACGTTATGAGATGTTATTGCTGGTAAAATCAATAATATCAGGATCTAGCCATACCAGTAAATGAAAATGTTGGTCGAATGCGTTTTGATAAAGCTTTTTCTGTTTCCTGTTTACGTTTGGCTTGAATTTCCATAAGTTCTTCATGCTTTTCACGGAAGAAGGCTAAAGGGTCATCAAACTCTCTATAGTAATCTAGCACAAGGCGAACATCATCGACACTCCCCATTGCAATCATTCTTAGGAAGGCAGCCAAGTCTATCAATTCTCTATCTGACTCATCGCCATTCCAACGTTNTATAATCAGTGAATTGCGTGG ]
[+] EMBL CD160204 [ TCAAACTCTCTATAGTAATCTAGCACAAGGCGAACATCATCGACACTCCCCATTGCAATCATTCTTAGGAAGGCAGCCAAGTCTATCAATTCTCTATCTGACTCATCGCCATTCCAACGTTTTATAATCAGTGAATTGCGTGGTTGCAACTGAGCTGCAGCAGGGTCCCAATCAACGAACACCACACGGGAGAGATCTCTATTAAGACATGACAAATCCTTGATATGTTTTCCTCCTTTATAGCGAGTTGCTTCGCGAAACAGCCGGAAGTGAATAAACTGTCCTTGAGGATCCATCTGAGCCAAGACAGGACCTCCAATCATTACTGATTCATTTGTATAGACAACAACCTCATAGTGAGGAGATAGCTGTTGCAAAAACAAATCTAACGCTGCTCTTTTCTTAAAGCGCCAACCTGAGCGGAACTTCCAATCAGGATGAACAAGCACATCGGTCATCTCCAGAAC ]
[-] EMBL CD065030 [ TGAGGATCCATCTGAGCCAAGACAGGACCTCCAATCATTACTGATTCATTTGTATAGACAACAACCTCATAGTGAGGAGATAGCTGTTGCAAAAACAAATCTAACGCTGCTCTTTTCTTAAAGCGCCAACCTGAGCGGAACTTCCAATCAGGATGAACAAGCACATCGGTCATCTCCAGAACAAGAGTATATGGTGGTTGGTAATATGGGGGTTGTACTGGATCTGGAAGGAGTTTCTCACTAACAGGATCCTTTATGCTTTGGTTGAATTCAAGCATAGAACTGAACGTTCGACAAAGGTAACCCCAGATAATTGGTCTTCGACCA CTT ACTTCGACTCCGTTATCATCCTTTTTCGGAGGACCCCAAGTAGCCACGGCAAACCCAACCGCAAACAAACCGGAACATGCCAAAGTAAAACAACCTATTTTCCATGCATTTTTCTCACTCCACCAAGACTGTTTAGATTTATCTTCTGATGAATCGT TTGAGCCTATGGAGTAATATGCA ]
[-] EMBL CD086158 [ CCAAGACAGGACCTCCAATCATTACTGATTCATTTGTATAGACAACAACCTCATAGTGAGGAGATAGCTGTTGCAAAAACAAATCTAACGCTGCTCTTTTCTTAAAGCGCCAACCTGAGCGGAACTTCCAATCAGGATGAACAAGCACATCGGTCATCTCCAGAACAAGAGTATATGGTGGTTGGTAATATGGGGGTTGTACTGGATCTGGAAGGAGTTTCTCACTAACAGGATCCTTTATGCTTTGGTTGAATTCAAGCATAGAACTGAACGTTCGACAAAGGTAACCCCAGATAATTGGTTTTCGACTAAAATTGTCTTCAATTTCGACTCCGTTATCATCCTTTTTCGGAGGACCCCAAGTAGCCACGGCAAACCCAACCGCAAACAAACCGGAACATGGCAAAGTAAAACAACCTATTTTCCATGCATTTTTCTCACTCCACCAAGACTGTTTAGATTTATCTT ]
[-] EMBL CD097824 [ AATCAGGATGAACAAGCACATCGGTCATCTCCAGAACAAGAGTATATGGCGGTTGGTAATATGGGGGTTGTACTGGATTTGGAAGGAGTTTCTCACTAACAGGATCCTTTATGCTTTGGTTGAATTCAAGCATAGAACTGAACGTTCGACAAAGGTAACCCCAGATAATTGGTTTTCGACTAAAATTGTCTTCAATTTCGACTCCGTTATCATCCTTTTTCGGAGGACCCCAAGTAGCCACGGCAAACCCAACCGCAAACAAACCGGAACATGCCAAAGTAAAACAACCTATTTTCCATGCATTTTTCTCACTCCACCAAGACTGTTTAGATTTATCTTCTGATGAATCGT TTGAGCCTATGGAGTAATATGCACTATATTGCTTGAAATAAGTCCACCTATCACATCTGTTCAGGGCGAAACGTCGCGTTGCTGATAGAAGCATCAGTTGCGGATCACGTTCC]
[-] EMBL CD097968 [ GGTCATCTCCAGAACAAGAGTATATGTTGGTTGCTAATATGGGGGTTGTACTGGATCTGGAAGGAGTTTCTCACTAACAGGATCCTTTATGCTTTGGTTGAATTCAAGCATAGAACTGAACGTTCGACAAAGGTAACCCCAGATAATTGGTTTTCGACTAAAATTGTCTTCAATTTCGACTCCGTTATCATCCTTTTTCGGAGGACCCCAAGTAGCCACGGCAAACCCAACCGCAAACAAACCGGAACATGCCTAAGTAAAACAATCTATTTTCCATGCATTTTTCTCACTCCACCAAGACTGTTTAGATTTATCTTCTGATGAATCGTCTTGAGCCTATGGAGTAATATGCACTATATTGCTTGAAATAAGTCCACCTATCACATCTGTTCAGGGCGAAACGTCGCGTTGCTGATAGAAGCATCAGTTGCGGATCACGTTCC]
consensusID : consensus_8761#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[TCCCACTCTTAAACACTTTTGCTGTTTCTCAATGTCGGTCTGAATGAGAAATGTCGGAGATACAACGCCATGTGGATAGTTCAAAATTATAGCTGAAAAACCTGGCTTCGTTTGAAACAAATGCTTTGTAAATTATTTTTTGGCTGTAGTTTGTCTGTCAACACTACAAAATTATGCATGGTTTCAAACGAATAAATTTAAGTTCAAAATAGACTTACCATAAGTTCTTCATGCTTTTCACGGAAGAAGGCTAAAGGGTCATCAAACTCTCTATAGTAATCTAGCACAAGGCGAACATCATCGACACTCCCCATTGCAATCACTAGAAAATTATAGATAATTAAGAACAGAGGAACATATGATAAGGGTAGTTGACGAGCATTTGAAGATGCAACAACTAGAGGTGAAAGGAGCGTCAACTTTTACTAGGTTTCAGAACAAGACTTTTAAATAGTTACTGAATACGAGATTAATTGATAGTGGTTGACTAGTCATCATGAGTTTGTCTTGTAACTTCAACCTGGGAATTAAGAAAGTCCCATTCCTAACCTTCCGGTACCGATGGTTTTGTACATGAAAAACTAATAGAAATTGAAATAGAACACATACTACTAAAAATAG]
[-] EMBL CD114131 [TCCCACTCTTAAACACTTTTGCTGTTTCTCAATGTCGGTCTGAATGAGAAATGTCGGAGATACAACGCCATGTGGATAGTTCAAAATTATAGCTGAAAAACCTGGCTTCGTTTGAAACAAATGCTTTGTAAATTATTTTTTGGCTGTAGTTTGTCTGTCAACACTACAAAATTATGCATGGTTTCAAACGAATAAATTTAAGTTCAAAATAGACTTACCATAAGTTCTTCATGCTTTTCACGGAAGAAGGCTAAAGGGTCATCAAACTCTCTATAGTAATCTAGCACAAGGCGAACATCATCGACACTCCCCATTGCAATCACTAGAAAATTATAGATAATTAAGAACAGAGGAACATATGATAAGGGTAGTTGACGAGCATTTGAAGATGCAACAACTAGAGGTGAAAGGAGCGTCAACTTTTACTAGGTTTCAGAACAAGACTTTTAAATAGTTACTGAATACGAGATTAATTGATAGTGGTTGACTAGTCATCATGAGTTTGTCTTGTAACTTCAACCTGGGAATTAAGAAAGTCCCATTCCTAACCTTCCGGTACCGATGGTTTTGTACATGAAAAACTAATAGAAATTGAAATAGAACACATACTACTAAAAATAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8761#0 ------------------------------AGGTTATATTTATATAAAAACAAGAGGATT 30
consensus_8761#1 TCCCACTCTTAAACACTTTTGCTGTTTCTCAATGTCGGTCTGAATGAGAAATGTCGGAGA 60
* * * * ** * ** ***
consensus_8761#0 TCCAAATCCCCTTGAGGATCATTCCTGTACAACGTTATGAGATGTTATTGCTGGTAAAAT 90
consensus_8761#1 TACAA--CGCCATGTGGATAGTTCAAAATTATAGCTGAAAAACCTGGCTTCGTTTGAAAC 118
* *** * ** ** **** *** * * * * * * * * * ***
consensus_8761#0 CAATAATATCAGGATCTAGCCATACCAGTAAATGAAAATGTTGGTCGAATGCGTTTTGAT 150
consensus_8761#1 AAATGCTTTGTAAATTATTTTTTGGCTGTAGTTTGTC-TGTCAACACTACAAAATTATGC 177
*** * * ** * * *** * *** * **
consensus_8761#0 AAAGCTTTTTCTGTTTCCTGTTTACGTTTGGCTTGAATTT-CCATAAGTTCTTCATGCTT 209
consensus_8761#1 ATGGTTTCAAACGAATAA-ATTTAAGTTCAAAATAGACTTACCATAAGTTCTTCATGCTT 236
* * ** * * **** *** * * ** *******************
consensus_8761#0 TTCACGGAAGAAGGCTAAAGGGTCATCAAACTCTCTATAGTAATCTAGCACAAGGCGAAC 269
consensus_8761#1 TTCACGGAAGAAGGCTAAAGGGTCATCAAACTCTCTATAGTAATCTAGCACAAGGCGAAC 296
************************************************************
consensus_8761#0 ATCATCGACACTCCCCATTGCAATCATTCTTAGGAAGGCAGCCAAGTCT-ATCAATTCTC 328
consensus_8761#1 ATCATCGACACTCCCCATTGCAATCACTAG-AAAATTATAGATAATTAAGAACAGAGGAA 355
************************** * * * ** ** * * **
consensus_8761#0 TATCTGACTCATCGCCATT--CCAACGTTNTATAATCAGTGAATTGCGTGGTTGCAACTG 386
consensus_8761#1 CATATGA-TAAGGGTAGTTGACGAGCATTTGAAGATGCAACAACTA-GAGGT--GAAAGG 411
** *** * * * ** * * * ** * ** ** * * *** ** *
consensus_8761#0 AGCTGCAGCAGGGTCCCAATCAACGAACACCACACGGGAGAGATCTCTATTAAGACATGA 446
consensus_8761#1 AGCGTCAACTTTTACTAGGTTTCAGAACAAGACTTTTAAATAGTTACTG--AATACGAGA 469
*** ** * * * ***** ** * * ** ** ** **
consensus_8761#0 CAAATCCTTGATATGTTTTCCTCCTTTATAGCGAGTT-GCTTCGCGAAAC--AGCCGGAA 503
consensus_8761#1 TTAA---TTGATAGTGGTTGACTAGTCATCATGAGTTTGTCTTGTAACTTCAACCTGGGA 526
** ****** ** * ** ***** * * * * * * ** *
consensus_8761#0 GTGAATAAACTGTCCTTGAGGATCCATCTGAGCCAAGACAGGACCTCCAATCATTACTGA 563
consensus_8761#1 ATTAAGAAAGTCCCATTCCTAACCTTCCGGTACCGAT---GGTTTTGTA--CATGAAAAA 581
* ** *** * * ** * * * * ** * ** * * *** * *
consensus_8761#0 TTCATTTGTATAGACAACAACCTCATAGTGA-GGAGATAGCTGTTGCAAAAACAAATCTA 622
consensus_8761#1 CTAATAGAAATTGAAATAGAACACATACTACTAAAAATAG-------------------- 621
* ** ** ** * * * **** * * ****
consensus_8761#0 ACGCTGCTCTTTTCTTAAAGCGCCAACCTGAGCGGAACTTCCAATCAGGATGAACAAGCA 682
consensus_8761#1 ------------------------------------------------------------
consensus_8761#0 CATCGGTCATCTCCAGAACAAGAGTATATGGTGGTTGGTAATATGGGGGTTGTACTGGAT 742
consensus_8761#1 ------------------------------------------------------------
consensus_8761#0 CTGGAAGGAGTTTCTCACTAACAGGATCCTTTATGCTTTGGTTGAATTCAAGCATAGAAC 802
consensus_8761#1 ------------------------------------------------------------
consensus_8761#0 TGAACGTTCGACAAAGGTAACCCCAGATAATTGGTTTTCGACTAAAATTGTCTTCAATTT 862
consensus_8761#1 ------------------------------------------------------------
consensus_8761#0 CGACTCCGTTATCATCCTTTTTCGGAGGACCCCAAGTAGCCACGGCAAACCCAACCGCAA 922
consensus_8761#1 ------------------------------------------------------------
consensus_8761#0 ACAAACCGGAACATGCCAAAGTAAAACAACCTATTTTCCATGCATTTTTCTCACTCCACC 982
consensus_8761#1 ------------------------------------------------------------
consensus_8761#0 AAGACTGTTTAGATTTATCTTCTGATGAATCGTTTGAGCCTATGGAGTAATATGCACTAT 1042
consensus_8761#1 ------------------------------------------------------------
consensus_8761#0 ATTGCTTGAAATAAGTCCACCTATCACATCTGTTCAGGGCGAAACGTCGCGTTGCTGATA 1102
consensus_8761#1 ------------------------------------------------------------
consensus_8761#0 GAAGCATCAGTTGCGGATCACGTTCC 1128
consensus_8761#1 --------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||