cluster # 8762

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Schistosoma mansoni
cluster # 8762 cluster # 8762 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8762#0 length = 840 sequences # 6

consensus_8762#1 length = 422 sequences # 1

consensusID : consensus_8762#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 840
fasta sequence

                              [ATACTTTATTGAACAACTATTGTTATTACTAGCACTCGCAGTGTTATATGAACGAACTATTCGTATTTAGTAGTAATAACCATAGCTTTATTTATATTTTGATATAAAAAAAGTTTTGTGTGTTTATCTTTTCTGTTTCGAATGAATCGTTTTTTTTTCTAAAAGAGAAAACCACAGCTGAACTTTGAAGCAAAACAATATTATGGGAGGAAAATATCATACAATTGGAACTAAGTTTTCATTGCGAACTGTTGATGTTGATGATCCTTTATCAAAAAGTTTATTCGTTCATTTGTTATGGAATAGTTTTTTTATATAAATATAGTTTTATAGACGTGAACGCATATCACAGACTTGGACTAAAGACTGTTATTTATATTCTAATTTTTCAAAAACCCTTCCCGTATATTTTTCTGGTTGCCTACTATCTCTTCTTGTTTGTAATAATGAATACAAGTAATGTTGTTCAATCCAATCTTACAGTTAGTCGATTTTTTTGTTCTGAGCATGTCTACTCGGAAGCATTGTTTGTTTTTTTGTCTGTCACTAAGTGGAAAAAAACCTTGTAAAAATTGTCACTCAATTACGTAGTCCTATGCACTTTCTTCTGTTGTTTATTGTTTTTTACGTTTGAAGTCACTGAAACAAAAAAAACACAACCAAAAAAT-GGACTC-ATGTTCAGTATATTTTCTGTATTAGTTATATCAGCTACAATTGTTTTGGGTTTTTTCTTACATCTGGTCGGTTGTTTTATAAAACGGTTTTCCGCATGGGGAATCTATTTCCTTCCCCGGGGTTAATTGGTATTGCGGGTTGCAATTTTTTAATAACACATTTGGG]

[+] EMBL CD185370             [ATACTTTATTGAACAACTATTGTTATTACTAGCACTCGCAGTGTTATATGAACGAACTATTCGTATTTAGTAGTAATAACCATAGCTTTATTTATATTTTGATATAAAAAAAGTTTTGTGTGTTTATCTTTTCTGTTTCGAATGAATCGTTTTTTTTTCTAAAAGAGAAAACCACAGCTGAACTTTGAAGCAAAACAATATTATGGGAGGAAAATATCATACAATTGGAACTAAGTTTTCATTGCGAACTGTTGATGTTGATGATCCTTTATCAAAAAGTTTATTCGTTCATTTGTTATGGAATAGTTTTTTTATATAAATATAGTTTTATAGACGTGAACGCATATCACAGACTTGGACTAAAGACTGTTATTTATATTCTAATTTTTCAAAAACCCTTCCCGTATATTTTTCTGGTTGCCTACTATCTCTTCTTGTTTGTAATAATGAATACAAGTAATGTTGTTCAATCCAATCTTACAGTTAGTCGA TTTTTTGTTCTGAGCATGTCTACTCGGAAGCATTGTTTGTTTTTTTGTCTGTCACTAAGTGGAAAAA                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD194334             [                                                                                                                                                                                      CTTTGAAGCAAAACAATATTATGGGAGGAAAATATCATACAATTGGAACTAAGTTTTCATTGCGAACTGTTGATGTTGATGATCCTTTATCAAAAAGTTTATTCGTTCATTTGTTATGGAATAGTTTTTTTATATAAATATAGTTTTATAGACGTGAACGCATATCACAGACTTGGACTAAAGACTGTTATTTATATTCTAATTTTTCAAAAACCCTTCCCGTATATTTTTCTGGTTGCCTACTATCTCTTCTTGTTTGTAATAATGAATACAAGTAATGTTGTTCAATCCAATCTTACAGTTAGTCGATTTTTTTGTTCTGAGCATGTCTACTCGGAAGCATTGTTTG TTTTTTGTCTGTCACTAAGTGGAAAAAAACCTTGTAAAAATTGTCACTCAATTACGT                                                                                                                                                                                                                                                             ]
[-] EMBL CD131343             [                                                                                                                                                                                                                                                                             TATCAAAAAGTTTATTCGTTCATTTGTTATGGAATAGTTTTTTTATATAAATATAGTTTTATAGACGTGAACGCATATCACAGACTTGGACT AAGACTGTTATTTATATTCTAATTTTTCAAAAACCCTTCCCGTATATTTTTCTGGTTGCCTACTATCTCTTCTTGTTTGTAATAATGAATACAAGTAATGTTGTTCAATCCAATCTTACAGTTAGTCGATTTTTTTGTTCTGAGCATGTCTACTCGGAAGCATTGTTTG TTTTTTGTCTGTCACTAAGTGGAAAAAAACCTTGTAAAAATTGTCACTCAATTACGTAGTCCTATGCACTTTCTTCTGTTGTTTACTGTTTTTTACGTTTGAAGTCACTGAAACAAAAAA                                                                                                                                                                                              ]
[+] EMBL CD130334             [                                                                                                                                                                                                                                                                                                                                                                                    TTTATATTCTAATTTTTCAAAAACCCTTCCCGTATATTTTTCTGGTTGCCTACTATCTCTTCTTGTTTGTAATAATGAATACAAGTAATGTTGTTCAATCCAATCTTACAGTTAGTCGATTTTTTTGTTCTGAGCATGTCTACTCGGAAGCATTGTTTGTTTTTTTGTCTGTCACTAAGTGGAAAAAAACCTTGTAAAAATTGTCACTCAATTACGTAGNCCTATGCACTTTCTTCTGTTGTTTATTGTTTTTTACGTTTGAAGTCACTGAAACAAAAAAAACACCACNAAAAAATGGGACTC ATGTTCAGTAT                                                                                                                                                           ]
[-] EMBL CD130283             [                                                                                                                                                                                                                                                                                                                                                                                     TTATATTCTAATTTTTCAAAAACCCTTCCCGTATATTTTTCTGGTTGCCTACTATCTCTTCTTGTTTGTAATAATGAATACAAGTAATGTTGTTCAATCCAATCTTACAGTTAGTCGATTTTTTTGTTCTGAGCATGTCTACTCGGAAGCATTGTTTGTTTTTTT TCTGTCACTAAGTGGAAAAAAACCTTGTAAAAATTGTCACTCAATTACGTAGTCCTATGCACTTTCTTCTGTTGTTTATTGTTTTTTACGTTTGAAGTCACTGAAACAAAAAAAACACAACCAAAAAAT GGACTCAATGTTCAGTATA                                                                                                                                                          ]
[+] EMBL AW146527             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AATCTTACAGTTAGTCGATTTTTTTGTTCTGAGCATGTCTACTCGGAAGCATTGTTTG TTTTTTGGCTGTCACTAAGTGGAAAAAAACCTTGTAAAAATTGTCACTCAATTACGTAGTCCTATGCACTTTCTTCTGTCGTTTATTGTTTTTTACGTTTGAAGTCACTGAAACAAAAAAAACACAACCAAAAAAT GGACTCAATGTTCAGTATATTTTCTGTATTAGTTATATCAGCTACAATTGTTTTGGGTTTTTTCTTACATCTGGTCGGTTGTTTTATAAAACGGTTTTCCGCATGGGGAATCTATTTCCTTCCCCGGGGTTAATTGGTATTGCGGGTTGCAATTTTTTAATAACACATTTGGG]




>consensus_8762#0
ATACTTTATTGAACAACTATTGTTATTACTAGCACTCGCAGTGTTATATGAACGAACTAT
TCGTATTTAGTAGTAATAACCATAGCTTTATTTATATTTTGATATAAAAAAAGTTTTGTG
TGTTTATCTTTTCTGTTTCGAATGAATCGTTTTTTTTTCTAAAAGAGAAAACCACAGCTG
AACTTTGAAGCAAAACAATATTATGGGAGGAAAATATCATACAATTGGAACTAAGTTTTC
ATTGCGAACTGTTGATGTTGATGATCCTTTATCAAAAAGTTTATTCGTTCATTTGTTATG
GAATAGTTTTTTTATATAAATATAGTTTTATAGACGTGAACGCATATCACAGACTTGGAC
TAAAGACTGTTATTTATATTCTAATTTTTCAAAAACCCTTCCCGTATATTTTTCTGGTTG
CCTACTATCTCTTCTTGTTTGTAATAATGAATACAAGTAATGTTGTTCAATCCAATCTTA
CAGTTAGTCGATTTTTTTGTTCTGAGCATGTCTACTCGGAAGCATTGTTTGTTTTTTTGT
CTGTCACTAAGTGGAAAAAAACCTTGTAAAAATTGTCACTCAATTACGTAGTCCTATGCA
CTTTCTTCTGTTGTTTATTGTTTTTTACGTTTGAAGTCACTGAAACAAAAAAAACACAAC
CAAAAAATGGACTCATGTTCAGTATATTTTCTGTATTAGTTATATCAGCTACAATTGTTT
TGGGTTTTTTCTTACATCTGGTCGGTTGTTTTATAAAACGGTTTTCCGCATGGGGAATCT
ATTTCCTTCCCCGGGGTTAATTGGTATTGCGGGTTGCAATTTTTTAATAACACATTTGGG

consensusID : consensus_8762#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [CTTTCTTCTGTTGTTTATTGTTTTTTACGTTTGAAGTCACTGAACAAAAAAACACAACCAAAAAATGGACTCAATGTTCAGTATATTTTCTGTATTAGTTATATCAGCTACAATTGTTTTGTGTTTTTTTCTTACATCTGTTCGTTTGTTTTATATAACGTTTTTCCGCATGTGTATTCTATTTCCTTTCCTGTGTTTAATTGTTATTTGCGTGTTGCAAATTCTTTAATAACACATTTGTTACTACTGCACAATTATTTTTTAGCAATTTCGCTTTGTGCTTCGTTTAAGAATTAATTAACAATCATTATATTTATTTACTTTCAGTCTTTATAAATTGTTCTGTTCGGTATTACTATAGTATATACGTTTTTTATCTCGCTCCCTCTGTGTATGTACGCGTTATCACCAATTGCTATTGT]

[-] EMBL AI739691             [CTTTCTTCTGTTGTTTATTGTTTTTTACGTTTGAAGTCACTGAACAAAAAAACACAACCAAAAAATGGACTCAATGTTCAGTATATTTTCTGTATTAGTTATATCAGCTACAATTGTTTTGTGTTTTTTTCTTACATCTGTTCGTTTGTTTTATATAACGTTTTTCCGCATGTGTATTCTATTTCCTTTCCTGTGTTTAATTGTTATTTGCGTGTTGCAAATTCTTTAATAACACATTTGTTACTACTGCACAATTATTTTTTAGCAATTTCGCTTTGTGCTTCGTTTAAGAATTAATTAACAATCATTATATTTATTTACTTTCAGTCTTTATAAATTGTTCTGTTCGGTATTACTATAGTATATACGTTTTTTATCTCGCTCCCTCTGTGTATGTACGCGTTATCACCAATTGCTATTGT]




>consensus_8762#1
CTTTCTTCTGTTGTTTATTGTTTTTTACGTTTGAAGTCACTGAACAAAAAAACACAACCA
AAAAATGGACTCAATGTTCAGTATATTTTCTGTATTAGTTATATCAGCTACAATTGTTTT
GTGTTTTTTTCTTACATCTGTTCGTTTGTTTTATATAACGTTTTTCCGCATGTGTATTCT
ATTTCCTTTCCTGTGTTTAATTGTTATTTGCGTGTTGCAAATTCTTTAATAACACATTTG
TTACTACTGCACAATTATTTTTTAGCAATTTCGCTTTGTGCTTCGTTTAAGAATTAATTA
ACAATCATTATATTTATTTACTTTCAGTCTTTATAAATTGTTCTGTTCGGTATTACTATA
GTATATACGTTTTTTATCTCGCTCCCTCTGTGTATGTACGCGTTATCACCAATTGCTATT
GT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8762#0      ATACTTTATTGAACAACTATTGTTATTACTAGCACTCGCAGTGTTATATGAACGAACTAT 60
consensus_8762#1      ------------------------------------------------------------
                                                                                  

consensus_8762#0      TCGTATTTAGTAGTAATAACCATAGCTTTATTTATATTTTGATATAAAAAAAGTTTTGTG 120
consensus_8762#1      ------------------------------------------------------------
                                                                                  

consensus_8762#0      TGTTTATCTTTTCTGTTTCGAATGAATCGTTTTTTTTTCTAAAAGAGAAAACCACAGCTG 180
consensus_8762#1      ------------------------------------------------------------
                                                                                  

consensus_8762#0      AACTTTGAAGCAAAACAATATTATGGGAGGAAAATATCATACAATTGGAACTAAGTTTTC 240
consensus_8762#1      ------------------------------------------------------------
                                                                                  

consensus_8762#0      ATTGCGAACTGTTGATGTTGATGATCCTTTATCAAAAAGTTTATTCGTTCATTTGTTATG 300
consensus_8762#1      ------------------------------------------------------------
                                                                                  

consensus_8762#0      GAATAGTTTTTTTATATAAATATAGTTTTATAGACGTGAACGCATATCACAGACTTGGAC 360
consensus_8762#1      -------------------------------------------------CTTTCTTCTGT 11
                                                                       *   ***    

consensus_8762#0      TAAAGACTGTTATTTATATTCTAATTTTTC-----AAAAACCCTTCCCGTATATTTTTCT 415
consensus_8762#1      TGTTTATTGTTTTTTACGTTTGAAGTCACTGAACAAAAAAACACAACCAAAAAATGGACT 71
                      *    * **** ****  **  ** *         ***** *    **  * * *   **

consensus_8762#0      GGTTGCCTACTATCTCTTCT-TGTTTGTAATAATGAATACAAGTAATGTTGTTCAATCCA 474
consensus_8762#1      CAATGTTCAGTATATTTTCTGTATTAGTTATATCAGCTACAA---TTGTTTTGTGTTTTT 128
                         **   * *** * **** * ** ** ***     *****    **** *    *   

consensus_8762#0      ATCTTACAGTTAGTCGATTTTTTTGTTCTGAGCATGTCTACTCGGAAGCATTGTTTGTTT 534
consensus_8762#1      TTCTTACATCTGTTCGTTTGTTTTAT----ATAACGTTTTTCCGCATGTGTATTCTATTT 184
                       *******  *  *** ** **** *    *  * ** *   ** * *  *  * * ***

consensus_8762#0      TTTTGTCTGTCACTAAGTGGAAAAAAACCTTGTAAAAATTGTCACTCAATTACGTAGTCC 594
consensus_8762#1      CCTTTCCTGTGTTTAATTGTTATTTGCGTGTTGCAAATTCTTTAATAACACATTTGTTAC 244
                        **  ****   *** **  *        *   *** *  * * * *   *  *  * *

consensus_8762#0      TA-TGCACTTTCTTCTGTTGTTTATTGTTTTTTACGTTTGAAGTCACTGAAACAAAAAAA 653
consensus_8762#1      TACTGCACAATTATTTTTTAGCAATTTCGCTTTGTGCT-----TCGTTTAAG-AATTAAT 298
                      ** *****  *  * * **    ***    ***  * *     **  * **  **  ** 

consensus_8762#0      ACACAACCAAAAAATGGACTCATGTTCAGTATATTTTCTGTATTAGTTATATCAGCTACA 713
consensus_8762#1      TAACAATCATTATATTTATTTACTTTCAGT---CTTTATAAATT-GTTCTGTTCGGTATT 354
                        **** **  * **  * * *  ******    *** *  *** *** * *  * **  

consensus_8762#0      ATTGTTTTGGGTTTTTTCTTACATCTGGTCGGTTGTTTTATAAAACGGTTTTCCGCATGG 773
consensus_8762#1      ACTATAGTATATACGTTTTTTATCTCGCTCCCTCTGTGTATGTACGCGTTATCACCAATT 414
                      * * *  *   *   ** **      * **  *   * ***  *   *** **  **   

consensus_8762#0      GGAATCTATTTCCTTCCCCGGGGTTAATTGGTATTGCGGGTTGCAATTTTTTAATAACAC 833
consensus_8762#1      GCTAT-TGT--------------------------------------------------- 422
                      *  ** * *                                                   

consensus_8762#0      ATTTGGG 840
consensus_8762#1      -------