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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8765#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1013 fasta sequence
[AACACTCGGTACGAGGCCAAAATCTACCGATTCATCGACTAGCAGGAAATATGCGAATGAATGAACTTATAGATGAATACCATAGTATACAATTGAATGAAATGAATGAAACAAATGAAACAGAACTGAAGACTATACGTCAACAAGTTGAAGATTTATCATGTCAATTGAATATATTATCAAAATTCACTTCTTTGGTTGCTGTAGATCCAACCAAGTTAGATGTTGATCCCAAGGAAAGAGTTAAAGTCACTGTACCTCATATGTTCCGTCGTTGCTCTGCTTTGAAAATGGCAATGCCTGCAGCGAATTTTTGCTATGATAGCATTGATGCTTCTGTCGGTGGAGCTATTGAATGCTACGCTTCACCGATGTGCTCCTTCACTGGTTCGTTGGGTTTTGATACAGGCATATGTGCTGAAGATCAATTTCAAAAAATTGAACCAGTTAAATTAATGGAAAAACATATAAGACTTGCTGAATTACAAAGTTTTTCCGGATTCTGGAAATTAAATTCTGATTTATCTGAATGTTTTGAAATACCTCTGGACAACTTAACAGAGTTTTTAAAACAAAATGAAAAATCCTCATTTCTATCGGATGTTACATGGGGGACCGCTCTGGCAATTGCTTTTCTGGAGTTATGTATGCCTGAGAAGGAAAATGAATGGCGTCTGATAGTTGATAAGGCCAAATATTGGCTCAACACTCAAGGTCAAATGAATCAAAAAGATACAAAGAATCCGAGTGAATCATGTGATGAACTTATTG-AA-AAGCTCGTCAGGTATTGACTAAATTATTGAAATCGACTACATCC-AATAGTCCTTG-AATAGAC-ATCTGACTGACTTTCTA-TTTGATTTGGAAGA-TTTTTTGACTTTC-TTCTTT-TATGATGGAAA-GTTGC-C-TTGATTT-T-AAACTA-GCCTATATTTGTTTGACAAACTAATTTATTATTTTATCTTTCTCATGAAAATACCATCGCAATTGATATTGGAATTTTTGAATATATCCCAATAGAT]
[+] EMBL CD082288 [AACACTCGGTACGAGGCCAAAATCTACCGATTCATCGACTAGCAGGAAATATGCGAATGAATGAACTTATAGATGAATACCATAGTATACAATTGAATGAAATGAATGAAACAAATGAAACAGAACTGAAGACTATACGTCAACAAGTTGAAGATTTATCATGTCAATTGAATATATTATCAAAATTCACTTCTTTGGTTGCTGTAGATCCAACCAAGTTAGATGTTGATCCCAAGGAAAGAGTTAAAGTCACTGTACCTCATATGTTCCGTCGTTGCTCTGCTTTGAAAATGGCAATGCCTGCAGCGAATTTTTGCTATGATAGCATTGATGCTTCTGTCGGTGGAGCTATTGAATGCTACGCTTCACCGATGTGCTCCTTCACTGGTTCGTTGGGTTTTGATACAGGCATATGTGCTGAAGATCAATTTCAAAAAATTGAACCAGTTAAATTAATGGAAAAACATATAAGACTTGCTGAATTACAAAGTTTTTCCGGATTCTGGAAATTAAATTCTGATTTATCTGAATGTTTTGAAATACCTCTGGACAACTTAACAGAGTTTTTAAAACAAAATGAAAAATCCTCATTTCTATCGGATGTTACATGGGGGACCGCTCTGGCAATTGCTTTTCTGGAGTTATGTATGCCTGAGAAGG AAATGAATGGCGTCTGATAGTTGATAAGGCC AATATTGGCTC ACACTCANGGTC AATGAATC ANAAGAT CAAAGAATCCGAGTG ATCATGTGATGAACTTATTG AA AAGCTCGTCAGGTATGGACTAAA TA TGAAATCGACTACATCC AATAGTCCTTG AATAGAC ATCTGACTGACTTTCTA TTTGATTTGGAAGA TTTTTTGACTTTC TTCTTT TTTGAAGGAAA GTGGC C TTGATTT T AAACTA GCCTA ]
[+] EMBL CD150094 [ CATAGTATACAATTGAATGAAATGAATGAAACAAATAAAACAGAACTGAAGACTATACGTCAACAAGTTGAAGATTTATCATGTCAATTGAATATATTATCAAAATTCACTTCTTTGGTTGCTGTAGATCCAACCAAGTTAGATGTTGATCCCAAGGAAAGAGTTAAAGTCACTGTACCTCATATGTTCCGTCGTTGCTCTGCTTTGAAAATGGCAATGCCTGCAGCGAATTTTTGCTATGATAGCATTGATGCTTCTGTCGGTGGAGCTATTGAATGCTACGCTTCACCGATGTGCTCCTTCACTGGTTCGTTGGGTTTTGATACAGGCATATGTGCTGAAGATCAATTTCAAAAAATTGAACCAGTTAAATTAATGGAAAAACATATAAGACTTGCTGAATTACGAAGTTTTTCCGGATTCTGGAAATTAAATTCTGATTTATCTGAATGTTTTGAAATACCTCTGGACAACTTAACAGAGTTTTTAAAACAAAATGAAAAATCCTCATTTCT ]
[+] EMBL CD082340 [ gagaccCAATTGAATATATTATCAAAATTCACTTCTTTGGTTGCTGTAGATCCAACCAAGTTAGATGTTGATCCCAAGGAAAGAGTTAAAGTCACTGTACCTCATATGTTCCGTCGTTGCTCTGCTTTGAAAATGGCAATGCCTGCAGCGAATTTTTGCTATGATAGCATTGATGCTTCTGTCGGTGGAGCTATTGAATGCTACGCTTCACCGATGTGCTCCTTCACTGGTTCGTTGGGTTTTGATACAGGCATATGTGCTGAAGATCAATTTCAAAAAATTGAACCAGTTAAATTAATGGAAAAACATATAAGACTTGCTGAATTACAAAGTTTTTCCGGATTCTGGAAATTAAATTCTGATTTATCTGAATGTTTTGAAATACCTCTGGACAACTTAACAGAGTTTTTAAAACAAAATGAAAAATCCTCATTTCTATCGGATGTTACATGGGGGACCGCTCTGGCAATTGCTTTTCTGGAGTTATGTATGCCTGAGAAGGAAAATGAATGGCGTCTGATAGTTGATAAGGCCAAATATTGGCTCAACACTCAAGGTCAAATGAATCAAAAAGATACAAAGAATCCGAGTGAATCATGTGATGAACTTATTG AANAAGCTCGTCAGGTATTGACTAAATTATTGAAATCGACTACAT ]
[+] EMBL AI977227 [ ATTATCAAAATTCACTTCTTTGGTTGCTGTAGATCCAACCAAGTTAGATGTTGATCCCAAGGAAAGAGTTAAAGTCACTGTACCTCATATGTTCCGTCGTTGCTCTGCTTTGAAAATGGCAATGCCTGCAGCGAATTTTTGCTATGATAGCATTGATGCTTCTGTCGGTGGAGCTATTGAATGCTACGCTTCACCGATGTGCTCCTTCACTGGTTCGTTGGGTTTTGATACAGGCATATGTGCTGAAGATCAATTTCAAAAAATTGAACCAGTTAAATTAATGGAAAAACATATAAGACTTGCTGAATTACAAAGTTTTTCCGGATTCTGGAAATTAAATTCTGATTTATCTGAATGTTTTGAAATACCTCTGGACAACTTAACAGAGTTTTTAAAACAAAATGAAAAATCCTCATTTCTATCGGATGTTACATGGGGGACCGCTCTGGCAATTGCTTTTCTGGAGTTATGTATGCCTGAGAAGGAAAATGAATGGCGTCTGATAGTTGATAAGGCCAAATATTGGCTCAACACTCAAGGTCAAATGAATCAAAAAGATACAAAGAANCCGAGTGAATCATGTGAT ]
[-] EMBL CD075894 [ ACAGGCATATGTGCTGAAGATCAATTTCAAAAAATTGAACCAGTTAAATTAATGGAAAAACATATAAGACTTGCTGAATTACAAAGTTTTTCCGGATTCTGGAAATTAAATTCTGATTTATCTGAATGTTTTGAAATACCTCTGGACAACTTAACAGAGTTTTTAAAACAAAATGAAAAATCCTCATTTCTATCGGATGTTACATGGGGGACCGCTCTGGCAATTGCTTTTCTGGAGTTATGTATGCCTGAGAAGGAAAATGAATGGCGTCTGATAGTTGATAAGGCCAAATATTGGCTCAACACTCAAGGTCAAATGAATCAAAAAGATACAAAGAATCCGAGTGAATCATGTGATGAACTTATTGAAA AAGCTCGTCAGGTATTGACTAAATTATTGAAATCGACTACATCCAAATAGTCCTTGTAATAGACAATCTGACTGACTTTCTATTTTGATTTGGAAGATTTTTTTGACTTTCTTTCTTTATATGATGGAAATGTTGCACTTTGATTTATAAAACTATGCCTATAT ]
[-] EMBL CD075939 [ ATCTGAATGTTTTGAAATACCTCTGGACAACTTAACAGAGTTTTTAAAACAAAATGAAAAATCCTCATTTCTATCGGATGTTACATGGGGGACCGCTCTGGCAATTGCTTTTCTGGAGTTATGTATGCCTGAGAAGGAAAATGAATGGCGTCTGATAGTTGATAAGGCCAAATATTGGCTCAACACTCAAGGTCAAATGAATCAAAAAGATACAAAGAATCCGAGTGAATCATGTGATGAACTTATTGAAA AAGCTCGTCAGGTATTGACTAAATTATTGAAATCGACTACATCCAAATAGTCCTTGTAATAGACAATCTGACTGACTTTCTATTTTGATTTGGAAGATTTTTTTGACTTTCTTTCTTTATATGATGGAAATGTTGCACTTTGATTTATAAAACTATGCCTATATTTGTTTGACAAACTAATTTATTATTTTATCTTTCTCATGAAAATACCATCGCAATTGATATTGGAATTTTTGAATATATCCCAATAGAT]
consensusID : consensus_8765#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence
[CGGGGCTGGGGAACTTATAGATGAATACCATAGTATACAATTGAATGAAATGAATGAAACAAATGAAACAGAACTGAAGACTATACGTCAACAAGTTGAAGATTTATCATGTCAATTGAATATATTATCAAAATTCACTTCTTTGGTTGCTGTAGATCCAACCAAGTTAGATGTTGATCCCAAGGAAGGAGTTAAAGTCACTGTACCTCATATGTTCCGTCGTTGCTCTGGTATGATTCATTAGACACTTATTTCATAATGTTTATTTACATGATTACTTTATCAATGAATTAAGATTTTATAGATTTATCAAATCAGTCTAACGTCAAAGGGGATATTCAAACAACCAATACAAAAATAAACCAATCAAACGTTATTTTTTGTCCGACTGATGTATACGTATTTGTAAATACTTTCTCGTGATTTACCTTTGGGTCGAATAAAATATGAGAACGTTTTTGAGTTTTATAAATTAGGTTGATTTCTCGCTCACCTTATCTGTAACTGACAATTTTCGGATT]
[-] EMBL CD200533 [CGGGGCTGGGGAACTTATAGATGAATACCATAGTATACAATTGAATGAAATGAATGAAACAAATGAAACAGAACTGAAGACTATACGTCAACAAGTTGAAGATTTATCATGTCAATTGAATATATTATCAAAATTCACTTCTTTGGTTGCTGTAGATCCAACCAAGTTAGATGTTGATCCCAAGGAAGGAGTTAAAGTCACTGTACCTCATATGTTCCGTCGTTGCTCTGGTATGATTCATTAGACACTTATTTCATAATGTTTATTTACATGATTACTTTATCAATGAATTAAGATTTTATAGATTTATCAAATCAGTCTAACGTCAAAGGGGATATTCAAACAACCAATACAAAAATAAACCAATCAAACGTTATTTTTTGTCCGACTGATGTATACGTATTTGTAAATACTTTCTCGTGATTTACCTTTGGGTCGAATAAAATATGAGAACGTTTTTGAGTTTTATAAATTAGGTTGATTTCTCGCTCACCTTATCTGTAACTGACAATTTTCGGATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8765#0 AACACTCGGTACGAGGCCAAAATCTACCGATTCATCGACTAGCAGGAAATATGCGAATGA 60
consensus_8765#1 ---------------------------------------------------CGGGGCTGG 9
* * **
consensus_8765#0 ATGAACTTATAGATGAATACCATAGTATACAATTGAATGAAATGAATGAAACAAATGAAA 120
consensus_8765#1 G-GAACTTATAGATGAATACCATAGTATACAATTGAATGAAATGAATGAAACAAATGAAA 68
**********************************************************
consensus_8765#0 CAGAACTGAAGACTATACGTCAACAAGTTGAAGATTTATCATGTCAATTGAATATATTAT 180
consensus_8765#1 CAGAACTGAAGACTATACGTCAACAAGTTGAAGATTTATCATGTCAATTGAATATATTAT 128
************************************************************
consensus_8765#0 CAAAATTCACTTCTTTGGTTGCTGTAGATCCAACCAAGTTAGATGTTGATCCCAAGGAAA 240
consensus_8765#1 CAAAATTCACTTCTTTGGTTGCTGTAGATCCAACCAAGTTAGATGTTGATCCCAAGGAAG 188
***********************************************************
consensus_8765#0 GAGTTAAAGTCACTGTACCTCATATGTTCCGTCGTTGCTCTGCTTTGAAAATGGCAATGC 300
consensus_8765#1 GAGTTAAAGTCACTGTACCTCATATGTTCCGTCGTTGCTCTGGTATGA------------ 236
****************************************** * ***
consensus_8765#0 CTGCAGCGAATTTTTGCTATGATAGCATTGATGCTTCTGTCGGTGGAGCTATTGAATGCT 360
consensus_8765#1 -TTCATTAGACACTTATT-TCATAATGTTTAT-------------------TTACATGAT 275
* ** * ** * * *** ** ** ** *** *
consensus_8765#0 ACGCTTCACCGATGTGCTCCTTCACTGGTTCGTTGGGTTTTGATACAGGCATATGTGCTG 420
consensus_8765#1 -TACTTTATCAATGAATT-----AAGATTTTATAGATTTATCAAATCAGTCTA-ACGTCA 328
*** * * *** * * ** * * ** * * * * ** *
consensus_8765#0 AAGATCAATTTCAAAAAATTGAACCAGTTAAATTAATGGAAAAACATATAAGACTTGCTG 480
consensus_8765#1 AAGGGGATATTCAAACAACCAATACAA--AAATAAACC---AATCAAACGTTATTTTTTG 383
*** * ****** ** * ** **** ** ** ** * * ** **
consensus_8765#0 AATTACAAAGTTTTTCCGGATTCTGGAAATTAAATTCTGATTTATCTGAATGTTTTGAAA 540
consensus_8765#1 TCCGACTGATGTATACGTATTTGTAAATACTTTCTCGTGATTTACCTTTGGGTC---GAA 440
** * * * * ** * * * * * ******* ** ** **
consensus_8765#0 TACCTCTGGACAACTTAACAGAGTTTTTAAAACAAAATGAAAAATCCTCATTTCTATCGG 600
consensus_8765#1 TAAAATATGAGAACGTTTTTGAGTTTTATAAATTAGGTTGAT--TTCTCGCTCACCTTAT 498
** ** *** * ******* *** * * * * *** * *
consensus_8765#0 ATGTTACATGGGGGACCGCTCTGGCAATTGCTTTTCTGGAGTTATGTATGCCTGAGAAGG 660
consensus_8765#1 CTGTAACT-----GACAATTTTCGGATT-------------------------------- 521
*** ** *** * * * * *
consensus_8765#0 AAAATGAATGGCGTCTGATAGTTGATAAGGCCAAATATTGGCTCAACACTCAAGGTCAAA 720
consensus_8765#1 ------------------------------------------------------------
consensus_8765#0 TGAATCAAAAAGATACAAAGAATCCGAGTGAATCATGTGATGAACTTATTGAAAAGCTCG 780
consensus_8765#1 ------------------------------------------------------------
consensus_8765#0 TCAGGTATTGACTAAATTATTGAAATCGACTACATCCAATAGTCCTTGAATAGACATCTG 840
consensus_8765#1 ------------------------------------------------------------
consensus_8765#0 ACTGACTTTCTATTTGATTTGGAAGATTTTTTGACTTTCTTCTTTTATGATGGAAAGTTG 900
consensus_8765#1 ------------------------------------------------------------
consensus_8765#0 CCTTGATTTTAAACTAGCCTATATTTGTTTGACAAACTAATTTATTATTTTATCTTTCTC 960
consensus_8765#1 ------------------------------------------------------------
consensus_8765#0 ATGAAAATACCATCGCAATTGATATTGGAATTTTTGAATATATCCCAATAGAT 1013
consensus_8765#1 -----------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||