cluster # 8773

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Schistosoma mansoni
cluster # 8773 cluster # 8773 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8773#0 length = 1199 sequences # 5

consensus_8773#1 length = 462 sequences # 1
consensus_8773#2 length = 323 sequences # 1

consensusID : consensus_8773#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1199
fasta sequence

                              [AGCTTGCAACCGGTGCATAATGAAAATGGACCATCATTGTCCCTGGATAAACACATGTTGCGGTCATCTTAACCATAAATATTTTTTGATATTTTTGTTGTTTGCTCCATTTG-GATGCATCACCTCTTGTATAGCACTATTGCTTTCTATATATCAAAGTCCAGCAATCTTTCCTAGTTTACTTTTGCGAAGATTTCAATCAAGCGTTTTGTTCGTCATAGCTGATCTAATGATAACATTATTTGCTTTGGGTTTAGCTGTGGGTGTTGCACTGTCTGTTGGGATTTTAGCCATTTTCCAGTTGAAAGCTGTTGCAAGGAATCAAACGGGAATAGAATCATGGATCGTAGCGAAAGCAAACGTTTGGCGAAAAGATGTAGGGG-AAAAAAAACCATTTCGCTATCCATATGACCTTGGAAAGATCGGAAATTTTCAGCAGATTTTTCTGTGGTCTGGTAAAGTCTTAGGAGATGGATACTACTGGCCTGTTGTGAAAGGCTGCACTCAGTATGACTTGACTTTGGAACAGATCTATCAAAAAAGGTTGAAGCAGAAAATTCAGCGCACATTCAAAATTACCCGAAATTATGATGGGAGTCGGTGTTTGTGTTTTCGCTATGGATGTCTAACTGCGATACGTTCCCCATGTTTTGAAGAACCCAGAATACCTGTACGTGTCGGTGATGTTCTTATGGTGACAAGAGGAACAAAGTACTGGATTTATGGTCATTTGGTCCCTTCTGAGAGTTTTGGTGATTTTTCAGATTCTGTCGAAACTTGTGGATGGGTTCCTCGTGTTTGTGCTTTGGAAGTCGGTTTCAAGCACAAAAACGACAAGTTCTCTCTTAAAAACGACTAGGCAATCACATTCCATCGTTCAGAGGACGATCCGTTTTCTATTTTGTAAATTACTACAGTGTTCGTACTAATTATCGTTACTTTACTCACTTTTGTAATTTCTTTTCTTGTTCTGTTCTTTCATTTTATTTTCCTATTTACTTTCTCTTATCTAAAAGATTGAGTGGGATGAAATTATTCTAATAACACAAACTGAACATCTCAGTCTAAGATTTGTCTAGATGTATTGTTTACCATCATTCTAACCACCAATCTTATGAAGTGACCCAAATGTTAGAGGAGCGTACTAGTAGTTGGTGTTTGTTTAACACAAGCTTTTCATATAGATTGATAATACAGTG]

[+] EMBL CD147647             [AGCTTGCAACCGGTGCATAATGAAAATGGACCATCATTGTCCCTGGATAAACACATGTTGCGGTCATCTTAACCATAAATATTTTTTGATATTTTTGTTGTTTGCTCCATTTG GATGCATCACCTCTTGTATAGCACTATTGCTTTCTATATATCAAAGTCCAGCAATCTTTCCTAGTTTACTTTTGCGAAGATTTCAATCAAGCGTTTTGTTCGTCATAGCTGATCTAATGATAACATTATTTGCTTTGGGTTTAGCTGTGGGTGTTGCACTGTCTGTTGGGATTTTAGCCATTTTCCAGTTGAAAGCTGTTGCAAGGAATCAAACGGGAATAGAATCATGGATCGTAGCGAAAGCAAACGTTTGGCGAAAAGATGTAGGGGAAAAAAAAACCATTTCGCTATCCATATGACCTTGGAAAGATCGGAAATTTTCAGCAGATTTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD144120             [     ggagCCGGTGCATAATGAAAATGGACCATCATTGTCCCTGGATAAACACATGTTGCGGTCATCTTAACCATAAATATTTTTTGATATTTTTGTTGTTTGCTCCATTTG GATGCATCACCTCTTGTATAGCACTATTGCTTTCTATATATCANAGTCCAGCAATCTTTCCTAGTTTACTTTTGCGAAGATTTCAATCAAGCGTTTTGTTCGTCATAGCTGATCTAATGATAACATTATTTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD083931             [                                                                                                           CATTTGTCATGCATCACCTCTTGTATAGCACTATTGCTTTCTATATATCAAAGTCCAGCAATCTTTCCTAGTTTACTTTTGCGAATATTTCAATCAACCGTTTCGTTCGTCATATCTGTTCTCTTTATGACATTATTTGCTTTGGGTTTAGCTGTGGGTGTTGCACTGTCTGTTGGGATTTTAGCCATTTTCCAGTTGAAAGCTGTTGCAAGGAATCAAACGGGAATAGAATCATGGATCGTAGCGAAAGCAAACGTTTGGCGAAAAGATGTAGGGG AAAAAAAACCATTTCGCTATCCATATGACCTTGGAAAGATCGGAAATTTTCAGCAGATTTTTCTGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD168123             [                                                                                                                                                                                                                                                                                                                                                     TGGATCGTAGCGAAAGCAAACGTTTGGCGAAAAGATGTAGGGG  AAAAAAACCATTTCGCTATCCATATGACCTTGGAAAGATCGGAAATTTTCAGCAGATTTTTCTGTGGTCTGGTAAAGTCTTAGGAGATGGATACTACTGGCCTGTTGTGAAAGGCTGCACTCAGTATGACTTGACTTTGGAACAGATCTATCAAAAAAGGTTGAAGCAGAAAATTCAGCGCACATTCAAAATTACCCGAAATTATGATGGGAGTCGGTGTTTGTGTTTTCGCTATGGATGTCTAACTGCGATACGTTCCCCATGTTTTGAAGAACCCAGAATACCTGTACGTGTCGGTGATGTTCTTATGGTGACAAGAGGAACAAAGTACTGGATTTATGGTCATTTGGTCCCTTCTGAGAGTTTTGGTGATTTTTCAGATTCTGTCGAAACTTGTGGATGGGTTCCTCGTGTTTGTGCTTTGGAAGTCGGTTTCAAGCACAAAAACGACAAGTTCTCTCTTAAAAACGACTAGGCAATCACATTCCATCGTTCAGAGGACGATCCGTTTTCTATTTTGTAAATTACTACAGTGTTCGTACTAATTATCGTTACTTTACTCACTTTTGTAATTTCTTTTCTTGTTCTGTTCTTTCATT                                                                                                                                                                                                                        ]
[-] EMBL BF440146             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGTCCGTGTCGGTGATGTT TT   GTGACAAGNGGAACAAAGTACT GATTTAT GTCATTT GTCCCTTCTGAGAGTTTTGGTGA TTTTCAGATTCTGTCGAAACTCGTGGATGGGTTCCTCGTGTTTGTGCTTTGGAAGTCGGTTTCAAGCACAAAAACGACAAGTTCTCTCTTAAAAACGACTAGGCAATCACATTCCATCGTTCAGAGGACGATCCGTTTTCTATTTTGTAAATTACTACAGTGTTCGTACTAATTATCGTTAC TTACTCACTTTTGTAATTTCTTTCCTTGTTCTGTTCTTTCATTTTATTTTCCTATTTACTTTCTCTTATCTAAAAGATTGAGTGGGATGAAATTATTCTAATAACACAAACTGAACATCTCAGTCTAAGATTTGTCTAGATGTATTGTTTACCATCATTCTAACCACCAATCTTATGAAGTGACCCAAATGTTAGAGGAGCGTACTAGTAGTTGGTGTTTGTTTAACACAAGCTTTTCATATAGATTGATAATACAGTG]




>consensus_8773#0
AGCTTGCAACCGGTGCATAATGAAAATGGACCATCATTGTCCCTGGATAAACACATGTTG
CGGTCATCTTAACCATAAATATTTTTTGATATTTTTGTTGTTTGCTCCATTTGGATGCAT
CACCTCTTGTATAGCACTATTGCTTTCTATATATCAAAGTCCAGCAATCTTTCCTAGTTT
ACTTTTGCGAAGATTTCAATCAAGCGTTTTGTTCGTCATAGCTGATCTAATGATAACATT
ATTTGCTTTGGGTTTAGCTGTGGGTGTTGCACTGTCTGTTGGGATTTTAGCCATTTTCCA
GTTGAAAGCTGTTGCAAGGAATCAAACGGGAATAGAATCATGGATCGTAGCGAAAGCAAA
CGTTTGGCGAAAAGATGTAGGGGAAAAAAAACCATTTCGCTATCCATATGACCTTGGAAA
GATCGGAAATTTTCAGCAGATTTTTCTGTGGTCTGGTAAAGTCTTAGGAGATGGATACTA
CTGGCCTGTTGTGAAAGGCTGCACTCAGTATGACTTGACTTTGGAACAGATCTATCAAAA
AAGGTTGAAGCAGAAAATTCAGCGCACATTCAAAATTACCCGAAATTATGATGGGAGTCG
GTGTTTGTGTTTTCGCTATGGATGTCTAACTGCGATACGTTCCCCATGTTTTGAAGAACC
CAGAATACCTGTACGTGTCGGTGATGTTCTTATGGTGACAAGAGGAACAAAGTACTGGAT
TTATGGTCATTTGGTCCCTTCTGAGAGTTTTGGTGATTTTTCAGATTCTGTCGAAACTTG
TGGATGGGTTCCTCGTGTTTGTGCTTTGGAAGTCGGTTTCAAGCACAAAAACGACAAGTT
CTCTCTTAAAAACGACTAGGCAATCACATTCCATCGTTCAGAGGACGATCCGTTTTCTAT
TTTGTAAATTACTACAGTGTTCGTACTAATTATCGTTACTTTACTCACTTTTGTAATTTC
TTTTCTTGTTCTGTTCTTTCATTTTATTTTCCTATTTACTTTCTCTTATCTAAAAGATTG
AGTGGGATGAAATTATTCTAATAACACAAACTGAACATCTCAGTCTAAGATTTGTCTAGA
TGTATTGTTTACCATCATTCTAACCACCAATCTTATGAAGTGACCCAAATGTTAGAGGAG
CGTACTAGTAGTTGGTGTTTGTTTAACACAAGCTTTTCATATAGATTGATAATACAGTG

consensusID : consensus_8773#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 462
fasta sequence

                              [AGTACATATTAGTTCTGCTACTGAAAACCAATTACAAGCCGCATCTACTTTTTAAATACAGAAAAAGTGGAATGAAAACGTGTTAAGATGGTAAGATTAGCTTTTAAAGCACATCAACACTATAAAACAAACTCCTTACGAGTTATAGGTCACTGTTCACCACTCCTAAACAAAAAAAATGATATGAGTACTCGACAGCTACCCGAATGATTCAGAGAGCTAAAAACTATATAAGTATCCCTGAACACTCCAGATATATTGCCTTGTTCCACCAGTACCAATGTGATACTTAAAGAAGGTATAACATAAAAAATTTACTAGTCTTATTAGCTATTGAAGATTCATCATAAAATTAAAATACGGGCCATGAACCATATATTTTATGAATTTTCACTGAACATTTTCTTCATCAATATTACCCACTCGGATTTATATACAGAAACAAAACAATTATGCTATATA]

[+] EMBL CD194600             [AGTACATATTAGTTCTGCTACTGAAAACCAATTACAAGCCGCATCTACTTTTTAAATACAGAAAAAGTGGAATGAAAACGTGTTAAGATGGTAAGATTAGCTTTTAAAGCACATCAACACTATAAAACAAACTCCTTACGAGTTATAGGTCACTGTTCACCACTCCTAAACAAAAAAAATGATATGAGTACTCGACAGCTACCCGAATGATTCAGAGAGCTAAAAACTATATAAGTATCCCTGAACACTCCAGATATATTGCCTTGTTCCACCAGTACCAATGTGATACTTAAAGAAGGTATAACATAAAAAATTTACTAGTCTTATTAGCTATTGAAGATTCATCATAAAATTAAAATACGGGCCATGAACCATATATTTTATGAATTTTCACTGAACATTTTCTTCATCAATATTACCCACTCGGATTTATATACAGAAACAAAACAATTATGCTATATA]




>consensus_8773#1
AGTACATATTAGTTCTGCTACTGAAAACCAATTACAAGCCGCATCTACTTTTTAAATACA
GAAAAAGTGGAATGAAAACGTGTTAAGATGGTAAGATTAGCTTTTAAAGCACATCAACAC
TATAAAACAAACTCCTTACGAGTTATAGGTCACTGTTCACCACTCCTAAACAAAAAAAAT
GATATGAGTACTCGACAGCTACCCGAATGATTCAGAGAGCTAAAAACTATATAAGTATCC
CTGAACACTCCAGATATATTGCCTTGTTCCACCAGTACCAATGTGATACTTAAAGAAGGT
ATAACATAAAAAATTTACTAGTCTTATTAGCTATTGAAGATTCATCATAAAATTAAAATA
CGGGCCATGAACCATATATTTTATGAATTTTCACTGAACATTTTCTTCATCAATATTACC
CACTCGGATTTATATACAGAAACAAAACAATTATGCTATATA

consensusID : consensus_8773#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [TCGAGCTTGCAACCGGTGCATAATGTAAATGGACCATCATTGTCCCTGGATAAACACATGTTGCGGTCATCTTAACCATAAATATTTTTTGATATTTTTGTTGTTTGCTCCATTTGGATGCATCACCTCTTGTATAGCACTATTGCTTTCTATATATCAAAGTCCAGCAATCATGCGGCTTGTAATTGGTTTTCAGTAGCAGAACTAATATGTACTGTCTTATTCCAGCTACATTTTTCACTCCATAAGTCATGTATTAGTCTCTTGAGAGGATATAGATATGGCGTGAACGTTTTGGGTGGTATCAGTGTTTCTAACTTCCT]

[+] EMBL CD200380             [TCGAGCTTGCAACCGGTGCATAATGTAAATGGACCATCATTGTCCCTGGATAAACACATGTTGCGGTCATCTTAACCATAAATATTTTTTGATATTTTTGTTGTTTGCTCCATTTGGATGCATCACCTCTTGTATAGCACTATTGCTTTCTATATATCAAAGTCCAGCAATCATGCGGCTTGTAATTGGTTTTCAGTAGCAGAACTAATATGTACTGTCTTATTCCAGCTACATTTTTCACTCCATAAGTCATGTATTAGTCTCTTGAGAGGATATAGATATGGCGTGAACGTTTTGGGTGGTATCAGTGTTTCTAACTTCCT]




>consensus_8773#2
TCGAGCTTGCAACCGGTGCATAATGTAAATGGACCATCATTGTCCCTGGATAAACACATG
TTGCGGTCATCTTAACCATAAATATTTTTTGATATTTTTGTTGTTTGCTCCATTTGGATG
CATCACCTCTTGTATAGCACTATTGCTTTCTATATATCAAAGTCCAGCAATCATGCGGCT
TGTAATTGGTTTTCAGTAGCAGAACTAATATGTACTGTCTTATTCCAGCTACATTTTTCA
CTCCATAAGTCATGTATTAGTCTCTTGAGAGGATATAGATATGGCGTGAACGTTTTGGGT
GGTATCAGTGTTTCTAACTTCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8773#0      -----------------------------------------AGCTTGCAACCGGTGCATA 19
consensus_8773#2      --------------------------------------TCGAGCTTGCAACCGGTGCATA 22
consensus_8773#1      AGTACATATTAGTTCTGCTACTGAAAACCAATTACAAGCCGCATCTACTTTTTAAATACA 60
                                                                   * *         * *

consensus_8773#0      ATGAAAATGGACCATCATTGTCCCTGGATAAACACATGTTGCGGTCATCTTAACCATAAA 79
consensus_8773#2      ATGTAAATGGACCATCATTGTCCCTGGATAAACACATGTTGCGGTCATCTTAACCATAAA 82
consensus_8773#1      GAAAAAGTGGAATGAAAACGTGTTAAGATGGTAAGAT-TAGCTTTTAAAGCA--CATCAA 117
                          ** ****     *  **     ***    * ** * **  * *    *  *** **

consensus_8773#0      TATTTTTTGATATTTTTGTTGTTTGCTCCATTTGGATGCATCACC--TCTTGTATAGCAC 137
consensus_8773#2      TATTTTTTGATATTTTTGTTGTTTGCTCCATTTGGATGCATCACC--TCTTGTATAGCAC 140
consensus_8773#1      CACTATAAAACAAACTCCTTACGAGTTATAGGTCACTGT-TCACCACTCCTAAACAAAAA 176
                       * * *   * *   *  **    * *  *  *   **  *****  ** *  * *  * 

consensus_8773#0      TATTGCTTTCTATATATCAAAGTCCAGC-AATCTTTCCT--AGTTTACTTTTGCGAAGAT 194
consensus_8773#2      TATTGCTTTCTATATATCAAAGTCCAGC-AATCATGC----GGCTTGTAATTG----GTT 191
consensus_8773#1      AAATGATATGAGTACTCGACAGCTACCCGAATGATTCAGAGAGCTAAAAACTATATAAGT 236
                       * ** * *   **    * **     * ***  * *     * *      *       *

consensus_8773#0      TTCAATCAAGCGTTTTGTTCGTCATAGCTGATCTAATGATAAC--ATTATTTGCTTTGGG 252
consensus_8773#2      TTCAGTAGCAGAACTAATATGTACTGTCTTATTCCA--GCTAC--ATTTTTCACTCCA-- 245
consensus_8773#1      ATCCCT-GAACACTCCAGATATATTGCCTTGTTCCACCAGTACCAATGTGATACTTAAAG 295
                       **  *               *  *  **  *   *     **  **      **     

consensus_8773#0      T---TTAGCTGTGG-GTGTTGCACTGTCTGTTGGGATTTTAGCCATTTTCCAGTTGAAAG 308
consensus_8773#2      ----TAAGTCAT---GTATTA----GTCTCTTGAGAGGATATAGATATGGCG--TGAACG 292
consensus_8773#1      AAGGTATAACATAAAAAATTTACTAGTCTTATTAGCTATTGAAGATTCATCA-TAAAATT 354
                          *      *      **     ****  *  *    *    **    *     **  

consensus_8773#0      CTGTTGCAAGGAATCAAACGGGAATAGAATCATGGATCGTAGCGAAAGCAAACGTTTGGC 368
consensus_8773#2      TT-TTGGGTGGTATCAG-TGTTTCTAACTTCCT--------------------------- 323
consensus_8773#1      AAAATACGGGCCATGAACCATATAT---TTTATGAATTTTCACTGAACATTTTCTTCATC 411
                          *    *  ** *        *    *  *                           

consensus_8773#0      GAAAAGATGTAGGGGAAAAAAAACCATTTCGCTATCCATATGACCTTGGAAAGATCGGAA 428
consensus_8773#2      ------------------------------------------------------------
consensus_8773#1      AATATTACCCACTCGGATTTATATACAGAAACAAAACAATTATGCTATATA--------- 462
                                                                                  

consensus_8773#0      ATTTTCAGCAGATTTTTCTGTGGTCTGGTAAAGTCTTAGGAGATGGATACTACTGGCCTG 488
consensus_8773#2      ------------------------------------------------------------
consensus_8773#1      ------------------------------------------------------------
                                                                                  

consensus_8773#0      TTGTGAAAGGCTGCACTCAGTATGACTTGACTTTGGAACAGATCTATCAAAAAAGGTTGA 548
consensus_8773#2      ------------------------------------------------------------
consensus_8773#1      ------------------------------------------------------------
                                                                                  

consensus_8773#0      AGCAGAAAATTCAGCGCACATTCAAAATTACCCGAAATTATGATGGGAGTCGGTGTTTGT 608
consensus_8773#2      ------------------------------------------------------------
consensus_8773#1      ------------------------------------------------------------
                                                                                  

consensus_8773#0      GTTTTCGCTATGGATGTCTAACTGCGATACGTTCCCCATGTTTTGAAGAACCCAGAATAC 668
consensus_8773#2      ------------------------------------------------------------
consensus_8773#1      ------------------------------------------------------------
                                                                                  

consensus_8773#0      CTGTACGTGTCGGTGATGTTCTTATGGTGACAAGAGGAACAAAGTACTGGATTTATGGTC 728
consensus_8773#2      ------------------------------------------------------------
consensus_8773#1      ------------------------------------------------------------
                                                                                  

consensus_8773#0      ATTTGGTCCCTTCTGAGAGTTTTGGTGATTTTTCAGATTCTGTCGAAACTTGTGGATGGG 788
consensus_8773#2      ------------------------------------------------------------
consensus_8773#1      ------------------------------------------------------------
                                                                                  

consensus_8773#0      TTCCTCGTGTTTGTGCTTTGGAAGTCGGTTTCAAGCACAAAAACGACAAGTTCTCTCTTA 848
consensus_8773#2      ------------------------------------------------------------
consensus_8773#1      ------------------------------------------------------------
                                                                                  

consensus_8773#0      AAAACGACTAGGCAATCACATTCCATCGTTCAGAGGACGATCCGTTTTCTATTTTGTAAA 908
consensus_8773#2      ------------------------------------------------------------
consensus_8773#1      ------------------------------------------------------------
                                                                                  

consensus_8773#0      TTACTACAGTGTTCGTACTAATTATCGTTACTTTACTCACTTTTGTAATTTCTTTTCTTG 968
consensus_8773#2      ------------------------------------------------------------
consensus_8773#1      ------------------------------------------------------------
                                                                                  

consensus_8773#0      TTCTGTTCTTTCATTTTATTTTCCTATTTACTTTCTCTTATCTAAAAGATTGAGTGGGAT 1028
consensus_8773#2      ------------------------------------------------------------
consensus_8773#1      ------------------------------------------------------------
                                                                                  

consensus_8773#0      GAAATTATTCTAATAACACAAACTGAACATCTCAGTCTAAGATTTGTCTAGATGTATTGT 1088
consensus_8773#2      ------------------------------------------------------------
consensus_8773#1      ------------------------------------------------------------
                                                                                  

consensus_8773#0      TTACCATCATTCTAACCACCAATCTTATGAAGTGACCCAAATGTTAGAGGAGCGTACTAG 1148
consensus_8773#2      ------------------------------------------------------------
consensus_8773#1      ------------------------------------------------------------
                                                                                  

consensus_8773#0      TAGTTGGTGTTTGTTTAACACAAGCTTTTCATATAGATTGATAATACAGTG 1199
consensus_8773#2      ---------------------------------------------------
consensus_8773#1      ---------------------------------------------------