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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8777#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1124 fasta sequence
[ATTTCGGCACGAGGCGTAAACGTAAAACAACATTATATCTTGGCAGTACAACCAGCACCACCGATATCGTGAACAATAATCATAATAATATCAACGAAGCCGAATCGTCATTGACAACTGATGACATTCCTGATAGTTTTCTGTCATCTGAGCCGCCAATTATACGAACTGATGTTCATAATAATGATAATCTCATTTCATTGCAAACTAGTGGACCAAGAAAGTTGAATAGTAGTAATGGTAATAATATAGTTCATTCAACTAAATCAAATGATAAATTCACACTGTCAGCTTTAAACCTAAGTCGTACCGCTGCTTCAATTGGTTTTATGAATCCTATTTATGTACCATTGAACGATAAATATGCAGAAGATAATTATGATCCAGAGCCCATAAATTAATTCATCATTCATACCTTTTCTTGGTTGTTTATCTCTAATAAAATCATACAAATAAACACACATATATGTGTGTACTTTTCGTGTCCATATCACAGTTTCAGTCTTTCGGTTGTTGAACAAAGTAATTGTCAAAAAAAATTTCTTGATGGTACATAGTAAGTTACTCGATAACATCACTTATTTGTTCACGTTACCATACAGTAATCATCATCAACATACACTGTTCATGTTNTATTGCGCTTATTCTGTTGTTTTTGTGCCTTTTTGTGAATGAATATGTCGATATGAAAATGTGAAACGACTTTATTATTATTAATGTGTAGAAGGCTCGTTCTTTTTTTTCATTTCCATTGTAATCAGATCTGCACATTCCTTTCCTGATTTCATG-AAAAGCTTTTTTTCTCAGTTTCGTTATCCTCCCCACTCATTTCTCCTTTGGACGTGTGTATTTTCTTGCCTGTAAAGGCGAAACTATTGCTATCGTTTTTCTTGTCCCTTTTATCCTGCCTTTCTAAGACTCAGTCAGCTTTTTTCTCTTATATATACAGTGTGATATAATACGTATGCGCCCTTGCTCACTCACTCAGATATGTGAGTAAAACAGTTTCTCTCACTGAAATCATGTATTCCTTTTTCACATTATTGTTTCCCACCACCAATCGTCCCTTCTGTTTAATTTATTTGGCTGTGCTACATACCATTAGATAAGTAATATATTTTTGT]
[+] EMBL CD081461 [ATTTCGGCACGAGGCGTAAACGTAAAACAACATTATATCTTGGCAGTACAACCAGCACCACCGATATCGTGAACAATAATCATAATAATATCAACGAAGCCGAATCGTCATTGACAACTGATGACATTCCTGATAGTTTTCTGTCATCTGAGCCGCCAATTATACGAACTGATGTTCATAATAATGATAATCTCATTTCATTGCAAACTAGTGGACCAAGAAAGTTGAATAGTAGTAATGGTAATAATATAGTTCATTCAACTAAATCAAATGATAAATTCACACTGTCAGCTTTAAACCTAAGTCGTACCGCTGCTTCAATTGGTTTTATGAATCCTATTTATGTACCATTGAACGATAAATATGCAGAAGATAATTATGATCCAGAGCCCATAAATTAATTCATCATTCATACCTTTTCTTGGTTGTTTATCTCTAATAAAATCATACAAATAAACACACATATATGTGTGTACTTTTCGTGTCCATATCACAGTTTCAGTCTTTCGGTTGTTGAACAAAGTAATTGTCAAAAAAAATTTCTTGATGGTACATAGTAAGTTACTCGATAACATCACTTATTTGTTCACGTTACCATACAGTAATCATCATCAACATACACTGTTCATGTTNTATTGCGCTTATTCTGTTGTTTTTGT ]
[+] EMBL CD181332 [ AAATTTCTTGATGGTACATGGTAAGTTACTCGATAACATCACTTATTTGTTCACGTTACCATACAGTAATCATCATCAACGTACACTGTTCATGTTTTATTGCGCTTATTCTGTTGTTTTTGTGCCTTTTTGTGAATGAATATGTCGATATGAAAATGTGAAACGACTTTATTATTATTAATGTGTAGAAGGCTCGTTCTTTTTTTTCATTTCCATTGTAATCAGATCTGCACATTCCTTTCCTGATTTCATGAAAAAGCTTTTTT ]
[-] EMBL CD075286 [ ATCATCATCAACATACACTGTTCATGTTNTATTGCGCTTATTCTGTTGTTTTTGTGCCTTTTTGTGAATGAATATGTCGATATGAAAATGTGAAACGACTTTATTATTATTAATGTGTAGAAGGCTCGTTCTTTTTTTTCATTTCCATTGTAATCAGATCTGCACATTCCTTTCCTGATTTCATG AAAAGCTTTTTTTCTCAGTTTCGTTATCCTCCCCACTCATTTCTCCTTTGGACGTGTGTATTTTCTTGCCTGTAAAGGCGAAACTATTGCTATCGTTTTTCTTGTCCCTTTTATCCTGCCTTTCTAAGACTCAGTCAGCTTTTTTCTCTTATATATACAGTGTGATATAATACGTATGCGCCCTTGCTCACTCACTCAGATATGTGAGTAAAACAGTTTCTCTCACTGAAATCATGTATTCCTTTTTCACATTATTGTTTCCCACCACCAATCGTCCCTTCTGTTTAATTTATTTGGCTGTGCTACATACCATTAGATAAGTAATATATTTTTGT]
consensusID : consensus_8777#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 665 fasta sequence
[TAATTGATCATAATTTCACTGATGTGTCATTAGATTTCAATTTTATACGAAATCATTTACTCGCTGCTGAAATGGTTCATGGTGGCAGTAATACTTATTCATATGCTGAAAATTATTGTTCACTTATACACGATGGAAAAACGCAATCAACCAAATTCGGTTGTTACATCAGTATAAATCCACCAATGTTTGAGAATTGTTCTCTAATTCAGTGCTTATATTCGGTTCCTACAGTTGGACGATCTATTCATTGGTCTAGTGGAATCATGCTATTTATATTTATTACTATATGTTGCATTTTCAGTGTCTACCTGTTTCGACGTATCGGTATTCATAAATGTATTAAAATTCGACGACGTTACCAACCATTTGATAGGTATCGTACATCACGTAAACGTAAAACAACATTATATCTTGGCAGTACAACCAGCACCACCGATATCGTGAACAATAATCATAATAATATCAACGAAGCCGAATCGTCATTGACAACTGATGACATTCCTGATAGTTTTCTGTCATCTGAGCCGCCAATTATACGAACTGATGTTCATAATAATGATAATCTCATTTCATTGCAAACTAGTGGACCAAGAAAGTTGAATAGTAGTAATGGTAATAATATAGTTCATTCAACTAAATCAAATGAATAATTCACACTGTCA]
[-] EMBL CD190601 [TAATTGATCATAATTTCACTGATGTGTCATTAGATTTCAATTTTATACGAAATCATTTACTCGCTGCTGAAATGGTTCATGGTGGCAGTAATACTTATTCATATGCTGAAAATTATTGTTCACTTATACACGATGGAAAAACGCAATCAACCAAATTCGGTTGTTACATCAGTATAAATCCACCAATGTTTGAGAATTGTTCTCTAATTCAGTGCTTATATTCGGTTCCTACAGTTGGACGATCTATTCATTGGTCTAGTGGAATCATGCTATTTATATTTATTACTATATGTTGCATTTTCAGTGTCTACCTGTTTCGACGTATCGGTATTCATAAATGTATTAAAATTCGACGACGTTACCAACCATTTGATAGGTATCGTACATCACGTAAACGTAAAACAACATTATATCTTGGCAGTACAACCAGCACCACCGATATCGTGAACAATAATCAT ]
[+] EMBL CD137926 [ TGAAAATTATTGTTCACTTATACACGATGGAAAAACGCAATCAACCAAATTCGGTTGTTACATCAGTATAAATCCACCAATGTTTGAGAATTGTTCTCTAATTCAGTGCTTATATTCGGTTCCTATAGTTGGACGATCTATTCATTGGTCTAGTGGAATCATGCTATTTATATTTATTACTATATGTTGCATTTTCAGTGTCTACCTGTTACGACGTATCGGTATTCATAAATGTATTAAAATTCGACGACGTTACCAACCATTTGATAGGTATCGTACATCACGTAAACGTAAAACAACATTATATCTTGGCAGTACAACCAGCACCACCGATATCGTGAACAATAATCATAATAATATCAACGAAGCCGAATCGTCATTGACAACTGATGACATTCCTGATAGTTTTCTGTCATCTGAGCCGCCAATTATACGAACTGATGTTCATAATAATGATAATCTCATTTCATTGCAAACTAGTGGACCAAGAAAGTTGAATAGTAGTAATGGTAATAATATAGTTCATTCAACTAAATCAAATGAATAATTCACACTGTCA]
[+] EMBL CD137983 [ TGAAAATTATTGTTCACTTATACACGATGGAAAAACGCAATCAACCAAATTCGGTTGTTACATCAGTATAAATCCACCAATGTTTGAGAATTGTTCTCTAATTCAGTGCTTATATTCGGTTCCTACAGTTGGACGATCTATTCATTGGTCTAGTGGAATCATGCTATTTATATTTATTACTATATGTTGCATTTTCAGTGTCTACCTGTTTCGACGTATCGGTATTCATAAATGTATTAAAATTCGACGACGTTACCAACCATTTGATAGGTATCGTACATCACGTAAACGTAAAACAACATTATATCTTGGCAGTACAACCAGCACCACCGATATCGTGAACAATAATCATAATAATATCAACGAAGCCGAATCGTCATTGACAACTGATGACATTCCTGATAGTTTTCTGTCATCTGAGCCGCCAATTATACGAACTGATGTTCATAATAATGATAATCTCATTTCATTGCAAACTAGTGGACCAAGAAAGTTGAATAGTAGTAATGGTAATAATATAGTTCATTCAACTAAATCAAATGATAAATTCACACTGTCA]
consensusID : consensus_8777#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence
[TACGAAATCATTTACTCGCTGCTGAAATGGTTCATGGTGGCAGTAATACTTATTCATATGCTGAAAATTATTGTTCACTTATACACGATGGAAAAACGCAATCAACCAAATTCGGTTGTTACATCAGTATAAATCCACCAATGTTTGAGAATTGTTCTCTAATTCAGTGCTTATATTCGGTTCCTACAGTTGGACGATCTATTCATTGGTCTAGTGGAATCATGCTATTTATATTTATTACTATATGTTGCATTTTCAGTGTCTACCTGTTTCGACGTATCGGTATTCATAAATGTATTAAAATTCGACGACGTTACCAACCATTTGATAGGTATCGTACATCACGTAAACGTAAAACAACATTATATCTTGGCAGTACAACCAGCACCACCGATATCGTGAACAATAATCATAATAATATCAACGAAGCCGAATCGTCATTGACAACTGATGACATTCCTGATAGTTTTCTGTCATCTGAGCCGCCAATTATACGAACTGATGTTCATAATAATGATAATCTCATTTCATTGCAAACTAGTGGACCAAGAAAGGGGTACCGAGG]
[-] EMBL CD129013 [TACGAAATCATTTACTCGCTGCTGAAATGGTTCATGGTGGCAGTAATACTTATTCATATGCTGAAAATTATTGTTCACTTATACACGATGGAAAAACGCAATCAACCAAATTCGGTTGTTACATCAGTATAAATCCACCAATGTTTGAGAATTGTTCTCTAATTCAGTGCTTATATTCGGTTCCTACAGTTGGACGATCTATTCATTGGTCTAGTGGAATCATGCTATTTATATTTATTACTATATGTTGCATTTTCAGTGTCTACCTGTTTCGACGTATCGGTATTCATAAATGTATTAAAATTCGACGACGTTACCAACCATTTGATAGGTATCGTACATCACGTAAACGTAAAACAACATTATATCTTGGCAGTACAACCAGCACCACCGATATCGTGAACAATAATCATAATAATATCAACGAAGCCGAATCGTCATTGACAACTGATGACATTCCTGATAGTTTTCTGTCATCTGAGCCGCCAATTATACGAACTGATGTTCATAATAATGATAATCTCATTTCATTGCAAACTAGTGGACCAAGAAAGGGGTACCGAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8777#1 ------------------------------------------------------------
consensus_8777#2 ------------------------------------------------------------
consensus_8777#0 ATTTCGGCACGAGGCGTAAACGTAAAACAACATTATATCTTGGCAGTACAACCAGCACCA 60
consensus_8777#1 -------------------------------------------TAATTGATCATAATTTC 17
consensus_8777#2 ------------------------------------------------------------
consensus_8777#0 CCGATATCGTGAACAATAATCATAATAATATCAACGAAGCCGAATCGTCATTGACAACTG 120
consensus_8777#1 ACTGATGTGTCATTAGATTTCAATTTTATACGAAATCATTTACTCGCTGCTGAAATGGTT 77
consensus_8777#2 ----------------------------TACGAAATCATTTACTCGCTGCTGAAATGGTT 32
consensus_8777#0 ATGACATTCCTGATAGTTTTCTGTCATCTGAGCCGCCAATTATACGA-ACTGATGTTCAT 179
* * ** *** ** **** * *
consensus_8777#1 CATGGTGGCAGTAATACTTATTCATATGCTG-------AAAATTATTGTTCACTTATAC- 129
consensus_8777#2 CATGGTGGCAGTAATACTTATTCATATGCTG-------AAAATTATTGTTCACTTATAC- 84
consensus_8777#0 AATAATGATAATCTCATTTCATTGCAAACTAGTGGACCAAGAAAGTTGAATAGTAGTAAT 239
** ** * * * ** * * ** ** * *** * * **
consensus_8777#1 -ACGATGGAAAAACGCAATCAACCAAATTCGGTTGTTACATCAGTATAAATCCACCAATG 188
consensus_8777#2 -ACGATGGAAAAACGCAATCAACCAAATTCGGTTGTTACATCAGTATAAATCCACCAATG 143
consensus_8777#0 GGTAATAATATAGTTCATTCAACTAAATCAAATGATAAATTCACACTGTCAGCTTTAAAC 299
** * * ** ***** **** * * * *** * * **
consensus_8777#1 TTTGA--GAATTGTT-CTCTAATTCAGTGCTTATATTCGGTTCCTACA--GTTGGACGAT 243
consensus_8777#2 TTTGA--GAATTGTT-CTCTAATTCAGTGCTTATATTCGGTTCCTACA--GTTGGACGAT 198
consensus_8777#0 CTAAGTCGTACCGCTGCTTCAATTGGTTTTATGAATCCTATTTATGTACCATTGAACGAT 359
* * * * * ** **** * * ** * ** * * *** *****
consensus_8777#1 C--TATTCATTGGTCTAGTGGAATCATG---CTATTTAT--ATTTATTACTATATGTTGC 296
consensus_8777#2 C--TATTCATTGGTCTAGTGGAATCATG---CTATTTAT--ATTTATTACTATATGTTGC 251
consensus_8777#0 AAATATGCAGAAGATAATTATGATCCAGAGCCCATAAATTAATTCATCATT-CATACCTT 418
*** ** * * * *** * * ** ** *** ** * * **
consensus_8777#1 ATTTTCAGTGTCTACCTGT-------TTCGACGTATCGGTATTCATAAATGTATTAAAAT 349
consensus_8777#2 ATTTTCAGTGTCTACCTGT-------TTCGACGTATCGGTATTCATAAATGTATTAAAAT 304
consensus_8777#0 TTCTTGGTTGTTTATCTCTAATAAAATCATACAAATAAACACACATATATGTGTGTACTT 478
* ** *** ** ** * * ** ** * **** **** * * *
consensus_8777#1 TCGACGACGTTACCAACCATTTGAT-----AGGTATCGTACATCACGTAAACGTAAAACA 404
consensus_8777#2 TCGACGACGTTACCAACCATTTGAT-----AGGTATCGTACATCACGTAAACGTAAAACA 359
consensus_8777#0 TTCGTGTCCATATCACAGTTTCAGTCTTTCGGTTGTTGAACA--AAGTAATTGTCAAAAA 536
* * * ** ** ** * * * * * *** * **** ** *** *
consensus_8777#1 ACATTATATCTTGGCAGTACAACCAGCACCAC-CGATATCGTGAACAAT--AATCATAAT 461
consensus_8777#2 ACATTATATCTTGGCAGTACAACCAGCACCAC-CGATATCGTGAACAAT--AATCATAAT 416
consensus_8777#0 AAATT---TCTTGATGGTACATAGTAAGTTACTCGATAACATCACTTATTTGTTCACGTT 593
* *** ***** ***** ** ***** * * * ** *** *
consensus_8777#1 AATATCAACGAAGCCGAATCGTCATTGACAACTGATGACAT-TCCTGATAGTTTTCTGTC 520
consensus_8777#2 AATATCAACGAAGCCGAATCGTCATTGACAACTGATGACAT-TCCTGATAGTTTTCTGTC 475
consensus_8777#0 ACCATACAGTAATCATCATCAACATACACTGTTCATGTTNTATTGCGCTTATTCTGTTGT 653
* ** * ** * *** *** ** * *** * * * * ** * *
consensus_8777#1 ATCTGAGCCGCCAATTATACGAACTGATGTTCATAATAATG----ATAATCTCATT-TCA 575
consensus_8777#2 ATCTGAGCCGCCAATTATACGAACTGATGTTCATAATAATG----ATAATCTCATT-TCA 530
consensus_8777#0 TTTTGTGCCTTTTTGTGAATGAATATGTCGATATGAAAATGTGAAACGACTTTATTATTA 713
* ** *** * * *** * ** * **** * * * *** * *
consensus_8777#1 TTGCAAACTAGTGGACCAAGAAAGTTGAATAGTAGTAATGGTAATAATATA---GTTCAT 632
consensus_8777#2 TTGCAAACTAGTGGACCAAGAAAGGGGTACCGAGG------------------------- 565
consensus_8777#0 TTAATGTGTAGAAGGCTCGTTCTTTTTTTTCATTTCCATTGTAATCAGATCTGCACATTC 773
** *** * *
consensus_8777#1 TCAACTAAATCAAATGAATAATTCACACTGTCA--------------------------- 665
consensus_8777#2 ------------------------------------------------------------
consensus_8777#0 CTTTCCTGATTTCATGAAAAGCTTTTTTTCTCAGTTTCGTTATCCTCCCCACTCATTTCT 833
consensus_8777#1 ------------------------------------------------------------
consensus_8777#2 ------------------------------------------------------------
consensus_8777#0 CCTTTGGACGTGTGTATTTTCTTGCCTGTAAAGGCGAAACTATTGCTATCGTTTTTCTTG 893
consensus_8777#1 ------------------------------------------------------------
consensus_8777#2 ------------------------------------------------------------
consensus_8777#0 TCCCTTTTATCCTGCCTTTCTAAGACTCAGTCAGCTTTTTTCTCTTATATATACAGTGTG 953
consensus_8777#1 ------------------------------------------------------------
consensus_8777#2 ------------------------------------------------------------
consensus_8777#0 ATATAATACGTATGCGCCCTTGCTCACTCACTCAGATATGTGAGTAAAACAGTTTCTCTC 1013
consensus_8777#1 ------------------------------------------------------------
consensus_8777#2 ------------------------------------------------------------
consensus_8777#0 ACTGAAATCATGTATTCCTTTTTCACATTATTGTTTCCCACCACCAATCGTCCCTTCTGT 1073
consensus_8777#1 ---------------------------------------------------
consensus_8777#2 ---------------------------------------------------
consensus_8777#0 TTAATTTATTTGGCTGTGCTACATACCATTAGATAAGTAATATATTTTTGT 1124
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||