These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8781#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 518 fasta sequence [TCGAGGCCAGAATCGGCACGAGGCCGATTCTAGTCGCCAGTTCATTTCGCAATTTGTCGACTTCATCACAATTATTCAGAAACCAGCAGCAAAGATATCGTGAGGCTAAGGTAACTGTGAATGAAAAGTCGAAGAGTAGACGAGATGCTGCTCGTGAGCTATTGATGAAAACAAATAGGACGAAATGGGAGCAGGAAATGGCTAGATTAAATATTTTGAAAGGTCGAATTCCAACTTCCGATACTTATTTAATGTCTGAGTTTGAGCCGAAAAAATACAGTTTGTCAGAAGCTGTTGAACTACTGCGTGAAAGTGCTCACCCGGATATGTATGATTGTATGGATAATCCAGTTCGAGTTAAGGTTACGCTCAATATGTGTACAAGGAAAAAGACAAGGTTCATTCCGAAATTTAATGGTAACCTCGTTCTACCGAATTTATTGGATTTCATGCCTGCTCATCGAGTATTGGCCATATGTCAAGATTCAGATGATCATGAAGCATATATAACTGCTGGC] [+] EMBL CD083479 [TCGAGGCCAGAATCGGCACGAGGCCGATTCTAGTCGCCAGTTCATTTCGCAATTTGTCGACTTCATCACAATTATTCAGAAACCAGCAGCAAAGAT TCGTGAGGCTAA GTAACTGTGAATGAAAAGTCGAAGAGTAGACGAGATGCTGCTCGTGAGCTATTGATGAAAACAAATAGGACGAAATGGGAGCAGGAAATGGCTAGATTAAATATTTTGAAAGGTCGAATTCCAACTTCCGATACTTATTTAATGTCTGAATTTGAGCCGAAAAAATACAGTTTGTCAGAAGCTGTTGAACTACTGCGTGAAAGTGCTCACCCGGATATGTATGATTGTATGGATAATCCAGTTCGAGTTAAGGTTACGCTCAATATGTGTACAAAGAAAAAGACAAGGTTCATTCCGAAATTTAATGGTAACCTCGTTCTACCGAATTTATTGGATTTCATGCCTGCTCATCGAGTATTGGCCATATGTCCAGATTCCGATGA ] [-] EMBL CD146985 [ CAAAGATATCGTGAGGCTAAGGTAACTGTGAATGAAAAGTCGAAGAGTAGACGAGATGCTGCTCGTGAGCTATTGATGAAAACAAATAGGACGAAATGGGAGCAGGAAATGGCTAGATTAAATATTTTGAAAGGTCGAATTCCAACTTCCGATACTTATTTAATGTCTGAGTTTGAGCCGAAAAAATACAGTTTGTCAGAAGCTGTTGAACTACTGCGTGAAAGTGCTCACCCGGATATGTATGATTGTATGGATAATCCAGTTCGAGTTAAGGTTACGCTCAATATGTGTACAAGGAAAAAGACAAGGTTCATTCCGAAATTTAATGGTAACCTCGTTCTACCGAATTTATTGGATTTCATGCCTGCTCATCGAGTATTGGCCATATGTCAAGATTCAGATGATCATGAAGCATATATAACTGCTGGC] [-] EMBL CD146963 [ AAAGATATCGTGAGGCTAAGGTAACTGTGAATGAAAAGTCGAAGAGTAGACGAGATGCTGCTCGTGAGCTATTGATGAAAACAAATAGGACGAAATGGGAGCAGGAAATGGCTAGATTAAATATTTTGAAAGGTCGAATTCCAACTTCCGATACTTATTTAATGTCTGAGTTTGAGCCGAAAAAATACAGTTTGTCAGAAGCTGTTGAACTACTGCGTGAAAGTGCTCACCCGGATATGTATGATTGTATGGATAATCCAGTTCGAGTTAAGGTTACGCTCAATATGTGTACAAGGAAAAAGACAAGGTTCATTCCGAAATTTAATGGTAACCTCGTTCTACCGAATTTATTGGATTTCATGCCTGCTCATCGAGTATTGGCCATATGTCAAGATTCAGATGATCATGAAGCATATATAACTGCTGGC] consensusID : consensus_8781#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 455 fasta sequence [ATGAAAAGGTTCAATGCAAATTCGCAAAGTAATTTGTTACAGTCATGCACATATTCAACCGATTCTAGTCGCCAGTTCATTTCGCAATTTGTCGACTTCATCACAATTATTCAGAAACCAGCAGCAAAGATATCGTGAGGCTAAAGTAACTGTGAATGAAAAGTCGAAGAGTAGACGAGATGCTGCTCGTGAGCTATTGATGAAAACAAATAGGACGAAATGGGAGCAGGAAATGGCTAGATTAAATATTTTGAAAGGTCGAATTCCAACTTCCGATACTTATTTAATGTCTGAATTTGAGCCGAAAAAATACAGTTTGTCAGAAGCTGTTGAACTACTGCGTGAAAGTGCTCACCCGGATATGTATGATTGTATGGATAATCCAGTTCGAGTTAAGGTTACGCTCAATATGTGTACAAAGAAAAAGACAAGGTTCATTCCGAAATTTAATGGTA] [+] EMBL CD140098 [ATGAAAAGGTTCAATGCAAATTCGCAAAGTAATTTGTTACAGTCATGCACATATTCAACCGATTCTAGTCGCCAGTTCATTTCGCAATTTGTCGACTTCATCACAATTATTCAGAAACCAGCAGCAAAGATATCGTGAGGCTAAAGTAACTGTGAATGAAAAGTCGAAGAGTAGACGAGATGCTGCTCGTGAGCTATTGATGAAAACAAATAGGACGAAATGGGAGCAGGAAATGGCTAGATTAAATATTTTGAAAGGTCGAATTCCAACTTCCGATACTTATTTAATGTCTGAATTTGAGCCGAAAAAATACAGTTTGTCAGAAGCTGTTGAACTACTGCGTGAAAGTGCTCACCCGGATATGTATGATTGTATGGATAATCCAGTTCGAGTTAAGGTTACGCTCAATATGTGTACAAAGAAAAAGACAAGGTTCATTCCGAAATTTAATGGTA] [+] EMBL CD140091 [ATGAAAAGGTTCAATGCAAATTCGCAAAGTAATTTGTTACAGTCATGCACATATTCAACCGATTCTAGTCGCCAGTTCATTTCGCAATTTGTCGACTTCATCACAATTATTCAGAAACCAGCAGCAAAGATATCGTGAGGCTAAAGTAACTGTGAATGAAAAGTCGAAGAGTAGACGAGATGCTGCTCGTGAGCTATTGATGAAAACAAATAGGACGAAATGGGAGCAGGAAATGGCTAGATTAAATATTTTGAAAGGTCGAATTCCAACTTCCGATACTTATTTAATGTCTGAATTTGAGCCGAAAAAATACAGTTTGTCAGAAGCTGTTGAACTACTGCGTGAAAGTGCTCACCCGGATATGTATGATTGTATGGATTATCCAGTTCG ] [+] EMBL CD140228 [ATGAAAAGGTTCAATGCAAATTCGCAAAGTAATTTGTTACAGTCATGCACATATTCAACCGATTCTAGTCGCCAGTTCATTTCGCAATTTGTCGACTTCATCACAATTATTCAGAAACCAGCAGCAAAGATATCGTGAGGCTAAAGTAACTGTGAATGAAAAGTCGAAGAGTAGACGAGATGCTGCTCGTGAGCTATTGATGAAAACAAATAGGACGAAATGGGAGCAGGAAATGGCTAGATTAAATATTTTGAAAGGTCGAATTCCAACTTCCGATACTTATTTAATGTCTGAATTTGAGCCGAAAAAATACAGTTTGTCAGAAGCTGTTGAACTACTGCGTGAAAGTGCTCACCCGGATATGTATGATTGTATGGATAATCCA ] consensusID : consensus_8781#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence [CTGCGTTACATTACTTCCTTATTATACAGTAACAACCCAATAAGCTTTCCCCGTTTAAAATTGTGAATCTTGTGATTGTATTGTTTTCTGTATTTCATGGGGTTCACAAACACAGGTTACGCTCAATATGTGTACAAAGAAAAAGACAAGGTTCATTCCGAAATTTAATGGTAACCTCGCTCTACCGAATTTATTGGATTTCATGCCTGCTCATCGAGTATTGGCCATATGTCAAGTACGTTAAAGGAGAAACTCACATATAAAAGTAACTTATTCTGTTTTGTGTTGATATAAACC] [+] EMBL CD135042 [CTGCGTTACATTACTTCCTTATTATACAGTAACAACCCAATAAGCTTTCCCCGTTTAAAATTGTGAATCTTGTGATTGTATTGTTTTCTGTATTTCATGGGGTTCACAAACACAGGTTACGCTCAATATGTGTACAAAGAAAAAGACAAGGTTCATTCCGAAATTTAATGGTAACCTCGCTCTACCGAATTTATTGGATTTCATGCCTGCTCATCGAGTATTGGCCATATGTCAAGTACGTTAAAGGAGAAACTCACATATAAAAGTAACTTATTCTGTTTTGTGTTGATATAAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8781#0 ------------------------------------TCGAGGCCAGAATCGGCACGAGGC 24 consensus_8781#1 ATGAAAAGGTTCAATGCAAATTCGCAAAGTAATTTGTTACAGTCATGCACA-TATTCAAC 59 consensus_8781#2 ------------------------------------------------------------ consensus_8781#0 CGATTCTAGTCGCCAGTTCATTTCGCAATTTGTCGACTTCATCACAATTATTCAGAAACC 84 consensus_8781#1 CGATTCTAGTCGCCAGTTCATTTCGCAATTTGTCGACTTCATCACAATTATTCAGAAACC 119 consensus_8781#2 ------------------------------------CTGCGTTACATTACTTCCTTATTA 24 ** * * *** * *** * consensus_8781#0 AGCAGCAAAGATATCGTGAGGCTAAGGTAACTGTGAATGAAAAGTCGAAGAGTAGACGAG 144 consensus_8781#1 AGCAGCAAAGATATCGTGAGGCTAAAGTAACTGTGAATGAAAAGTCGAAGAGTAGACGAG 179 consensus_8781#2 TACAGTAACAACCCAATAAGCTTTCCCCGTTTAAAATTGTGAATCTTGTGATTGTATTGT 84 *** ** * * ** * * * ** ** ** * * consensus_8781#0 ATGCTGCTCGTGA-GCTATTGATGAAAACAAATAGGACGAAATGGGAGCAGGAAATGGCT 203 consensus_8781#1 ATGCTGCTCGTGA-GCTATTGATGAAAACAAATAGGACGAAATGGGAGCAGGAAATGGCT 238 consensus_8781#2 TTTCTGTATTTCATGGGGTTCACAAACACAGGTTACGCTCAATATGTGTAC-AAAGAAAA 143 * *** * * * ** * ** *** * * *** * * * *** consensus_8781#0 AGATTAAATATTTTGAAAGGTCGAATTCCAACTTC-CGATACTTATTTAATGTCTGAGTT 262 consensus_8781#1 AGATTAAATATTTTGAAAGGTCGAATTCCAACTTC-CGATACTTATTTAATGTCTGAATT 297 consensus_8781#2 AGACAAGGTTCATTCCGAAATTTAATGGTAACCTCGCTCTACCGAATTTAT---TGGATT 200 *** * * ** * * *** *** ** * *** * ** ** ** ** consensus_8781#0 TGAGCCGAAAAAATACAGTTTGTCAGAAGCTGTTGAACTACTGCGTGAAAGTGCTCACCC 322 consensus_8781#1 TGAGCCGAAAAAATACAGTTTGTCAGAAGCTGTTGAACTACTGCGTGAAAGTGCTCACCC 357 consensus_8781#2 TCATGCCTGCTCATCGAGTATT-----GGCCATATGTCAAGTACGTTAAAGGAGAAACTC 255 * * * ** *** * ** * * * * *** **** ** * consensus_8781#0 GGATATGTATGATTGTATGGATAATCCAGTTCGAGTTAAGGTTACGCTCAATATGTGTAC 382 consensus_8781#1 GGATATGTATGATTGTATGGATAATCCAGTTCGAGTTAAGGTTACGCTCAATATGTGTAC 417 consensus_8781#2 ----ACATATAAAAGTA-ACTTATTCTGTTTTGTGTTGATATAAACC------------- 297 * *** * *** ** ** ** * *** * * * * consensus_8781#0 AAGGAAAAAGACAAGGTTCATTCCGAAATTTAATGGTAACCTCGTTCTACCGAATTTATT 442 consensus_8781#1 AAAGAAAAAGACAAGGTTCATTCCGAAATTTAATGGTA---------------------- 455 consensus_8781#2 ------------------------------------------------------------ consensus_8781#0 GGATTTCATGCCTGCTCATCGAGTATTGGCCATATGTCAAGATTCAGATGATCATGAAGC 502 consensus_8781#1 ------------------------------------------------------------ consensus_8781#2 ------------------------------------------------------------ consensus_8781#0 ATATATAACTGCTGGC 518 consensus_8781#1 ---------------- consensus_8781#2 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||