These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8786#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 941 fasta sequence [TTTTGGCTGAGGATTCTAATTGTCTCCGATAACACAGCAGACGTTGAGTTAATAAAGTAGACAAGTGTGGATTTGTAATAAAGTTATGTGTGAGCATTGTAGCTGCATCAGGTCTTCGTCGTTCTGCTTTGATTAAACAACATTTAATAAACGAATGAAATAATGGTGACCATTTATGACGGTCTTGTAAAGAAGGAGGCTTATAGTTTCGCGAACCCAGAATTTGTAGTGCTTTCCTAGGGTCTAAATCGAACATTGGAGGTTGCAGTTCAGCATATTCAATAGCGGTAATCCCAACACCCCAAATATCACACTTTCCATCATAACCCGAGCCACGAGATTCAATTGAGGCTACCTCAGGCGCCATCCAGTAGGGTGTTCCAATTAAAGTTGTCCGTTTGGCAATCGAAGTACTCAGTTGGGCGGCGACACCGAAATCCGCCACTTTGACATGACCGTCATCTGTCAGAAGAATATTAGCACCTTTAATATCTCTATGAATACGCCCACGATTGTGCATAAAGTTCAAACCTTGTAAAGTTTCCCGGGAGACAAATGCAATGCAGTCTTCTTCTAAGGGACGTCTGGTATAGAGATAAATATCTTGCATAGATTGTCCACCGCAATATTCCATGCATATCCATAATTTGTTATTTCTAAGATAACTACCATAAAATTGCACAATATTTGGATGCCGACATTCTCTCAAGGTGTGTATTTCTTGACAAATTGATCGAATGTCATCCTTTAGATCAATCTTCATAACTTTAACCGCCACCAGTGTTCGCCTTTCACGATGAACCGCCTTGAAGACATCTCCGTAGGTCCCACTACCGATTGGAGCGAGTATTTTATATTCCTCCTTCGGGTCATTAGGTTTCACAAACTGTCGAAGGTAATCTAGCTTAGGATGGTTCATGTATCGTTATATTCATTTCGTC] [-] EMBL CD188174 [TTTTGGCTGAGGATTCTAATTGTCTCCGATAACACAGCAGACGTTGAGTTAATAAAGTAGACAAGTGTGGATTTGTAATAAAGTTATGTGTGAGCATTGTAGCTGCATCAGGTCTTCGTCGTTCTGCTTTGATTAAACAACATTTAATAAACGAATGAAATAATGGTGACCATTTATGACGGTCTTGTAAAGAAGGAGGCTTATAGTTTCGCGAACCCAGAATTTGTAGTGCTTTCCTAGGGTCTAAATCGAACATTGGAGGTTGCAGTTCAGCATATTCAATAGCGGTAATCCCAACACCCCAAATATCACACTTTCCATCATAACCCGAGCCACGAGATTCAATTGAGGCTACCTCAGGCGCCATCCAGTAGGGTGTTCCAATTAAAGTTGTCCGTTTGGCAAT ] [+] EMBL CD147010 [ TCTCCGATAACACAGCAGACGTTGAGTTAATAAAGTAGACAAGTGTGGATTTGTAATAAAGTTATGTGTGAGCATTGTAGCTGCATCAGGTCTTCGTCGTTCTGCTTTGATTAAACAACATTTAATAAACGAATGAAATAATGGTGACCATTTATGACGGTCTTGTAAAGAAGGAGGCTTATAGTTTCGCGAACCCAGAATTTGTAGTGCTTTCCTAGGGTCTAAATCGAACATTGGAGGTTGCAGTTCAGCATATTCAATAGCGGTAATCCCAACACCCCAAATATCACACTTTCCATCATAACCCGAGCCACGAGATTCAATTGAGGCTACCTCAGGCGCCATCCAGTAGGGTGTTCCAATTAAAGTTGTCCGTTTGGCAATCGAAGTACTCAGTTGGGCGGCGACACCGAAATCCGCCACTTTGACATGACCGTCATCTGTCAGAAGAATATTAGCACCTTTAATATCTCTATGAATACGCCCACGATTGTGCATAAAGTTCAAACCTTGTAAAGTTTCCCGGGAGACAAATGCAATGCAGTCTTCTTCTAAGGGACGTCTGGTATAGAGATAAATATCTTGCAT ] [-] EMBL CD165321 [ CAAATGCAATGCAGTCTTCTTCTAAGGGACGTCTGGTATAGAGATAAATATCTTGCATAGATTGTCCACCGCAATATTCCATGCATATCCATAATTTGTTATTTCTAAGATAACTACCATAAAATTGCACAATATTTGGATGCCGACATTCTCTCAAGGTGTGTATTTCTTGACAAATTGATCGAATGTCATCCTTTAGATCAATCTTCATAACTTTAACCGCCACCAGTGTTCGCCTTTCACGATGAACCGCCTTGAAGACATCTCCGTAGGTCCCACTACCGATTGGAGCGAGTATTTTA ] [-] EMBL CD185924 [ AATGCAGTCTTCTTCTAAGGGACGTCTGGTATAGAGATAAATATCTTGCATAGATTGTCCACCGCAATATTCCATGCATATCCATAATTTGTTATTTCTAAGATAACTACCATAAAATTGCACAATATTTGGATGCCGACATTCTCCCAAGGTGTGTATTTCTTGACAAATTGATCGAATGTCATCCTTTAGATCAATCTTCATAACTTTAACCGCCACCAGTGTTCGCCTTTCACGATGAACCGCCTTGAAGACATCTCCGTAGGTCCCACTACCGATTGGAGCGAGTATTTTATATTCCTCCTTCGGGTCATTAGGTTTCACAAACTGTCGAAGGTAATCTAGCTTAGGATGGTTCATGT ] [-] EMBL CD193935 [ TACCATAAAATTGCACAATATTTGGATGCCGACATTCTCTCAAGGTGTGTATTTCTTGACAAATTGATCGAATGTCATCCTTTAGATCAATCTTCATAACTTTAACCGCCACCAGTGTTCGCCTTTCACGATGAACCGCCTTGAAGACATCTCCGTAGGTCCCACTACCGATTGGAGCGAGTATTTTATATTCCTCCTTCGGGTCATTAGGTTTCACAAACTGTCGAAGGTAATCTAGCTTAGGATGGTTCATGTATCGTTATATTCATTTCGTC] consensusID : consensus_8786#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 488 fasta sequence [CGTCGTTCTTTGATTAAACAACATTTAATAAACGAATGAAATAATGGTGACCATTTATGACGGTCTTGTAAAGAAGGAGGCTTATAGTTTCGCGAACCCAGAATTTGTAGTGCTTTCCTAGGGTCTAAATCGAACATTGGAGGTTGCAGTTCAGCATAAAGTTCAAACCTTGTAAAGTTTCCCGGGAGACAAATGCAATGCAGTCTTCTTCTAAGGGACGTCTGGTATAGAGATAAATATCTTGCATAGATTGTCCACCGCAATATTCCATGCATATCCATAATTTGTTATTTCTAAGATAACTACCATAAAATTGCACAATATTTGGATGCCGACATTCTCTCAAGGTGTGTATTTCTTGACAAATTGATCGAATGTCATCCTTTAGATCAATCTTCATAACTTTAACCGCCACCAGTGTTCGCCTTTCACGATGAACCGCCTTGAAGACATCTCCGTAGGTCCCACTACCGATTGGAGCGAGTATT] [+] EMBL CD095206 [CGTCGTTCTTTGATTAAACAACATTTAATAAACGAATGAAATAATGGTGACCATTTATGACGGTCTTGTAAAGAAGGAGGCTTATAGTTTCGCGAACCCAGAATTTGTAGTGCTTTCCTAGGGTCTAAATCGAACATTGGAGGTTGCAGTTCAGCATAAAGTTCAAACCTTGTAAAGTTTCCCGGGAGACAAATGCAATGCAGTCTTCTTCTAAGGGACGTCTGGTATAGAGATAAATATCTTGCATAGATTGTCCACCGCAATATTCCATGCATATCCATAATTTGTTATTTCTAAGATAACTACCATAAAATTGCACAATATTTGGATGCCGACATTCTCTCAAGGTGTGTATTTCTTGACAAATTGATCGAATGTCATCCTTTAGATCAATCTTCATAACTTTAACCGCCACCAGTGTTCGCCTTTCACGATGAACCGCCTTGAAGACATCTCCGTAGGTCCCACTACCGATTGGAGCGAGTATT] [+] EMBL CD095265 [CGTCGTTCTTTGATTAAACAACATTTAATAAACGAATGAAATAATGGTGACCATTTATGACGGTCTTGTAAAGAAGGAGGCTTATAGTTTCGCGAACCCAGAATTTGTAGTGCTTTCCTAGGGTCTAAATCGAACATTGGAGGTTGCAGTTCAGCATAAAGTTCAAACCTTGTAAAGTTTCCCGGGAGACAAATGCAATGCAGTCTTCTTCTAAGGGACGTCTGGTATAGAGATAAATATCTTGCATAGATTGTCCACCGCAATATTCCATGCATATCCATAATTTGTTATTTCTAAGATAACTACCATAAAATTGCACAATATTTGGATGCCGACATTCTCTCAAGGTGTGTATTTCTTGACAAATTGATCGAATGTCATCCTTTAGATCAATCTTCATAACTTTAACCGCCACCAGTGTTCGCCTTTCACGATGAAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8786#0 TTTTGGCTGAGGATTCTAATTGTCTCCGATAACACAGCAGACGTTGAGTTAATAAAGTAG 60 consensus_8786#1 ------------------------------------------------------------ consensus_8786#0 ACAAGTGTGGATTTGTAATAAAGTTATGTGTGAGCATTGTAGCTGCATCAGGTCTTCGTC 120 consensus_8786#1 ------------------------------------------------------------ consensus_8786#0 GTTCTGCTTTGATTAAACAACATTTAATAAACGAATGAAATAATGGTGACCATTTATGAC 180 consensus_8786#1 ------------------------------------------------------------ consensus_8786#0 GGTCTTGTAAAGAAGGAGGCTTATAGTTTCGCGAACCCAGAATTTGTAGTGCTTTCCTAG 240 consensus_8786#1 ------------------------------------------------------------ consensus_8786#0 GGTCTAAATCGAACATTGGAGGTTGCAGTTCAGCATATTCAATAGCGGTAATCCCAACAC 300 consensus_8786#1 ------------------------------------------------------------ consensus_8786#0 CCCAAATATCACACTTTCCATCATAACCCGAGCCACGAGATTCAATTGAGGCTACCTCAG 360 consensus_8786#1 -------------------------------------------CGTCGTTCTTTGATTAA 17 * * * * * consensus_8786#0 GCGCCATCCAGTAGGGTGTTCCAATTAAAGTTGTCCGTTTGGCAATCGAAGTACTCAGTT 420 consensus_8786#1 ACAACATTTAATAAA-CGAATGAAATAATGGTGACCATTTA-----TGACGGTCTTGTAA 71 * *** * ** * ** *** * ** ** *** ** * ** consensus_8786#0 GGGCGGCGACACCGAAATCCGCCACTTTGACATGACCGTCATCTGTCAGAAGAATATTAG 480 consensus_8786#1 AGAAGGAGGCTTATAGTTTCGCGAACCCAGAAT--TTGTAGTGCTTTCCTAGGGTCTAAA 129 * ** * * * * *** * ** ** * * ** * * * consensus_8786#0 CACCTTTAATATCTCTATGAATACGCCCACGATTGTGCATAAAGTTCAAACCTTGTAAAG 540 consensus_8786#1 ----TCGAACAT-----TGGA---GGTTGCAGTTCAGCATAAAGTTCAAACCTTGTAAAG 177 * ** ** ** * * * ** ************************ consensus_8786#0 TTTCCCGGGAGACAAATGCAATGCAGTCTTCTTCTAAGGGACGTCTGGTATAGAGATAAA 600 consensus_8786#1 TTTCCCGGGAGACAAATGCAATGCAGTCTTCTTCTAAGGGACGTCTGGTATAGAGATAAA 237 ************************************************************ consensus_8786#0 TATCTTGCATAGATTGTCCACCGCAATATTCCATGCATATCCATAATTTGTTATTTCTAA 660 consensus_8786#1 TATCTTGCATAGATTGTCCACCGCAATATTCCATGCATATCCATAATTTGTTATTTCTAA 297 ************************************************************ consensus_8786#0 GATAACTACCATAAAATTGCACAATATTTGGATGCCGACATTCTCTCAAGGTGTGTATTT 720 consensus_8786#1 GATAACTACCATAAAATTGCACAATATTTGGATGCCGACATTCTCTCAAGGTGTGTATTT 357 ************************************************************ consensus_8786#0 CTTGACAAATTGATCGAATGTCATCCTTTAGATCAATCTTCATAACTTTAACCGCCACCA 780 consensus_8786#1 CTTGACAAATTGATCGAATGTCATCCTTTAGATCAATCTTCATAACTTTAACCGCCACCA 417 ************************************************************ consensus_8786#0 GTGTTCGCCTTTCACGATGAACCGCCTTGAAGACATCTCCGTAGGTCCCACTACCGATTG 840 consensus_8786#1 GTGTTCGCCTTTCACGATGAACCGCCTTGAAGACATCTCCGTAGGTCCCACTACCGATTG 477 ************************************************************ consensus_8786#0 GAGCGAGTATTTTATATTCCTCCTTCGGGTCATTAGGTTTCACAAACTGTCGAAGGTAAT 900 consensus_8786#1 GAGCGAGTATT------------------------------------------------- 488 *********** consensus_8786#0 CTAGCTTAGGATGGTTCATGTATCGTTATATTCATTTCGTC 941 consensus_8786#1 ----------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||