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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8810#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1339 fasta sequence
[ATGTGCAATAGTAGGTTCTGACAAACACTGCAAAAGTTCATAATGCAGATCCGAATACAGTTGGATATCAACTTGACACTTTCATCTTGTTTCGATTTGTAAGAGTAACCAATTATATGTCTCAGTGGTTCAAAAATAGTCCACCAC-ATTAGGCAAAGTGGAGGAGGTGGTTGAGACATCAAAATCTGATCAACAGAAAAGC-GGGGATGGCTGAGAAACTTATAACGTCCAGCTGTACTTGGCCAATCAATACTGGTCCAGCTGCTGAGAGAATTAGTTCCAGGTTGATGGTGCTTTGAAATCCTCGAAAGTCTTAACCAGTGGGAGATACATAAAATAATCTGCGGCGGAGGAATTTTGGTTGCTTCGTGCGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCATAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATAGTGTATAATGGGTTGTCTTTGTTTGGATCTCCATTCTGGATCATATCGTTTTTAGACAATATTGGATTCGAAGATAATGGAGACCCCTGTATACTGAGCATATCGGATGTAAGTGCTGTAACGTACTCCTCAATAATTTCATACGAAATGTAAGGTAAATAATTAGCTGACTGTAGTGCTGAGGAAGCACAAAGTTGGCAAACTCGGACCTTTAGCCACAAAGAAACAATTTCTAGTACTGGGGATAGTCCAAGGCAAATAGCTAACGATGATAATTTTATTAGGAAGTACAAACAGTCAGTGCTAATATCCTTATCAGCAGGAAAGACTTCGAAGAACAAGCGATACTTCATATCCTCTTCGTTTTTCAGCATTACGTACGTAGCTATGGTATCCAAAATTTCGACTTCCTCCAGTGGACTTGGTTTCTTCCCATCAACTGTAAGTACGCTGTTAGCAGAAAATTTCAAAGTTTCTGAATTAGTATGTTCGTCTCTAAGATATGACTCCAAGGTAACAAGAGACTTTTTGCATGTTTCAGAAGCTGACATTTTACGATCACAAATTTAATGTCTTCGGATTACTCGTTAAGGAATTTGTTAAACTTCTATATTTATTAAACANATAATAATAGTAGTAACTACTATAGGATATTTATAGCCTTTTGTCACTTAAATACCAAAGTAAACTCTAGCCCTTTATTGCTGTCTAGAGCAAATAAAATATACTTTATTTTTCTCAGTGTATTGAAGCCATCAGTAATGTGGCACTTGTAGTCTGAGGATGCTCTTACTCCAATGTTGAACGATGGCACAAGGAAACAAGGGTGCGATTCATAGGTATTTGTTCAGCAAATTAA]
[+] EMBL CD127528 [ATGTGCAATAGTAGGTTCTGACAAACACTGCAAAAGTTCATAATGCAGATCCGAATACAGTTGGATATCAACTTGACACTTTCATCTTGTTTCGATTTGTAAGAGTAACCAATTATATGTCTCAGTGGTTCAAAAATAGTCCACCAC ATTAGGCAAAGTGGAGGAGGTGGTTGAGACATCAAAATCTGATCAACAGAAAAGC GGGGATGGCTGAGAAACTTATAACGTCCAGCTGTACTTGGCCAATCAATACTGGTCCAGCTGCTGAGAGAATTAGTTCCAGGTTGATGGTGCTTTGAAATCCTCGAAAGTCTTAACCAGTGGGAGATACATAAAATAATCTGCGGCGGAGGAATTTTGGTTGCTTCGTGCGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCATAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATAGTGTATAATG ]
[-] EMBL CD180497 [ CTCAGTGGTTCAAAAATAGTCCACCACAATTAGGCAAATTGGAGGAGTTGTTTGAGACATCAATATCTGATCAACAGAAAAGCGGGGGATGGCTGAGAAACTTATAACGTCTAGCTGTACTTGGCCAATCAATACTGGTCCAGCTGCTGAGAGAATTAGTTCCAGGTTGATGGTGCTTTGAAATCCTCGAAAGTCTTAACCAGTGGGAGATACATAAAATAATCTGCGGCGGAGGAATTTTGGTTGCTTCGTGCGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCATAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATAGTGTATAATGGGTTGTCTTTGTTTGGATCTCCATTCTGGATCATATCGTTTTTAGACAATATTGGAT ]
[+] EMBL CD116637 [ CGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCATAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATAGTGTATAATGGGTTGTCTTTGTTTGGATCTCCATTCTGGATCATATCGTTTTTAGACAATATTGGATTCGAAGATAATGGAGACCCCTGTATACTGAGCATATCGGATGTAAGTGCTGTAACGTACTCCTCAATAATTTCATACGAAATGTAAGGTAAATAATTAGCTGACTGTAGTGCTGAGGAAGCACAAAGTTGGCAAACTCGGACCTTTAGCCACAAAGAAACAATTTCTAGTACTGGGGATAGTCCAAGGCAAATAGCTAACGATGATAATTTTATTAGGAAGTACAAACAGTCAGTGCTAATATCCTTATCAGCAGGAAAGACTTCGAAGAACAAGCGATACTTCATATCCTCTTCGTTTTTCAGCATTACGTA ]
[-] EMBL CD186154 [ TATAATGGG TGTCTTTG TTGGATCTCCATTGTGGATCATATCGTTTTTAGACAATATTGGATTCGAAGATAATGGAGACCCCTGTATACTGAGCATATCGGATGTAAGTGCTGTAACGTACTCCTCAATAATTTCATACGAAATGTAAGGTAAATAATTAGCTGACTGTAGTGCTGAGGAAGCACAAAGTTGGCAAACTCGGACCTTTAGCCACAAAGAAACAATTTCTAGTACTGGGGATAGTCCAAGGCAAATAGCTAACGATGATAATTTTATTAGGAAGTACAAACAGTCAGTGCTAATATCCTTATCAGCAGGAAAGACTTCGAAGAACAAGCGATACTTCATATCCTCTTCGTTTTTCAGCATTACGTACGTAGCTATGGTATCCAAAATTTCGACTTCCTCCAGTGGACTTGGTTTCTTCCCATCAACTGTAAGTACGCTGTTAGCAGAAAATTTCAAAGTTTCTGAATTAGTATGTTCGTCTCTAAGATATGACTCCAAGGTAACAAGAGACTTTTTGCATGTTTCAGAAGCTGACATTTTACGATCACAAATTT ]
[+] EMBL CD179357 [ GGATCTCCATTCTGGATCATATCGTTTTTAGACAATATTGGATTCGAAGATAATGGAGACCCCTGTATACTGAGCATATCGGATGTAAGTGCTGTAACGTACTCCTCAATAATTTCATACGAAATGTAAGGTAAATAATTAGCTGACTGTAGTGCTGAGGAAGCACAAAGTTGGCAAACTCGGACCTTTAGCCACAAAGAAACAATTTCTAGTACTGGGGATAGTCCAAGGCAAATAGCTAACGATGATAATTTTATTAGGAAGTACAAACAGTCAGTGCTAATATCCTTATCAGCAGGAAAGACTTCGAAGAACAAGCGATACTTCATATCCTCTTCGTTTTTCAGCATTACGTACGTAGCTATGGTATCCAAAATTTCGACTTCCTCCAGTGGACTTGGTTTCTTCCCATCAACTGTAAGTACGCTGTTAGCAGAAAATTTCAAAGTTTCTGAATTAGTATGTTCGTCTCTAAGATATGACTCCAAGGTAACAAGAGACTTTTTGCATGTTTCAGAAGCTGACATTTTACGATCACAAATTTAATGTCTTCGGATTACTCGTTAAGGAATTTGTTAAACTTCTATATTTATTAAACANATAATAATAG ]
[-] EMBL CD180638 [ TTCTTCCCATCAACTGTAAGTACGCTGTTAGCAGAAAATTTCAAAGTTTCTGAATTAGTATGTTCGTCTCTAAGATATGACTCCAAGGTAACAAGAGACTTTTTGCATGTTTCAGAAGCTGACATTTTACGATCACAAATTTAATGTCTTCGGATTACTCGTTAAGGAATTTGTTAAACTTCTATATTTATTCAACAAATAATAATAGTAGTAACTACTATAGGATATTTATAGCCTTTTGTCACTTAAATACCAAAGTAAACTCTAGCCCTTTATTGCTGTCTAGAGCAAATAAAATATACTTTATTTTTCTCAGTGTATTGAAGCCATCAGTAATGTGGCACTTGTAGTCTGAGGATGCTCTTACTCCAATGTTGAACGATGGCACAAGGAAACAAGGGTGCGATTCATAGGTATTTGTTCAGCAAATTAA]
consensusID : consensus_8810#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence
[GGNNNANACATCAAAATCTGATCAACAAAAAAGCGGGGATGGCTGAGAAACTTATAACGTCCAGCTGTACTTGGCCAATCAATACTGGTCCAGCTGCTGAGAGAATTAGTTCCAGGTTGATGGTGCTTTGAAATCCTCGAAAGTCTTAACCAGTGGGAGATACATAAAATAATCTGCGGCGGAGGAATTTTGGTTGCTTCGTGCGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCATAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATAGTGTATAATGGGTTGTCTTTACCTACCTAT]
[+] EMBL CD127069 [GGNNNANACATCAAAATCTGATCAACAAAAAAGCGGGGATGGCTGAGAAACTTATAACGTCCAGCTGTACTTGGCCAATCAATACTGGTCCAGCTGCTGAGAGAATTAGTTCCAGGTTGATGGTGCTTTGAAATCCTCGAAAGTCTTAACCAGTGGGAGATACATAAAATAATCTGCGGCGGAGGAATTTTGGTTGCTTCGTGCGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCATAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATAGTGTATAATGGGTTGTCTTTACCTACCTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8810#0 ATGTGCAATAGTAGGTTCTGACAAACACTGCAAAAGTTCATAATGCAGATCCGAATACAG 60
consensus_8810#1 ------------------------------------------------------------
consensus_8810#0 TTGGATATCAACTTGACACTTTCATCTTGTTTCGATTTGTAAGAGTAACCAATTATATGT 120
consensus_8810#1 ------------------------------------------------------------
consensus_8810#0 CTCAGTGGTTCAAAAATAGTCCACCACATTAGGCAAAGTGGAGGAGGTGGTTGAGACATC 180
consensus_8810#1 ------------------------------------------------GGNNNANACATC 12
** * *****
consensus_8810#0 AAAATCTGATCAACAGAAAAGCGGGGATGGCTGAGAAACTTATAACGTCCAGCTGTACTT 240
consensus_8810#1 AAAATCTGATCAACAAAAAAGCGGGGATGGCTGAGAAACTTATAACGTCCAGCTGTACTT 72
*************** ********************************************
consensus_8810#0 GGCCAATCAATACTGGTCCAGCTGCTGAGAGAATTAGTTCCAGGTTGATGGTGCTTTGAA 300
consensus_8810#1 GGCCAATCAATACTGGTCCAGCTGCTGAGAGAATTAGTTCCAGGTTGATGGTGCTTTGAA 132
************************************************************
consensus_8810#0 ATCCTCGAAAGTCTTAACCAGTGGGAGATACATAAAATAATCTGCGGCGGAGGAATTTTG 360
consensus_8810#1 ATCCTCGAAAGTCTTAACCAGTGGGAGATACATAAAATAATCTGCGGCGGAGGAATTTTG 192
************************************************************
consensus_8810#0 GTTGCTTCGTGCGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCA 420
consensus_8810#1 GTTGCTTCGTGCGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCA 252
************************************************************
consensus_8810#0 TAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATA 480
consensus_8810#1 TAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATA 312
************************************************************
consensus_8810#0 GTGTATAATGGGTTGTCTTTGTTTGGATCTCCATTCTGGATCATATCGTTTTTAGACAAT 540
consensus_8810#1 GTGTATAATGGGTTGTCTTTACCTACCTAT------------------------------ 342
******************** * * *
consensus_8810#0 ATTGGATTCGAAGATAATGGAGACCCCTGTATACTGAGCATATCGGATGTAAGTGCTGTA 600
consensus_8810#1 ------------------------------------------------------------
consensus_8810#0 ACGTACTCCTCAATAATTTCATACGAAATGTAAGGTAAATAATTAGCTGACTGTAGTGCT 660
consensus_8810#1 ------------------------------------------------------------
consensus_8810#0 GAGGAAGCACAAAGTTGGCAAACTCGGACCTTTAGCCACAAAGAAACAATTTCTAGTACT 720
consensus_8810#1 ------------------------------------------------------------
consensus_8810#0 GGGGATAGTCCAAGGCAAATAGCTAACGATGATAATTTTATTAGGAAGTACAAACAGTCA 780
consensus_8810#1 ------------------------------------------------------------
consensus_8810#0 GTGCTAATATCCTTATCAGCAGGAAAGACTTCGAAGAACAAGCGATACTTCATATCCTCT 840
consensus_8810#1 ------------------------------------------------------------
consensus_8810#0 TCGTTTTTCAGCATTACGTACGTAGCTATGGTATCCAAAATTTCGACTTCCTCCAGTGGA 900
consensus_8810#1 ------------------------------------------------------------
consensus_8810#0 CTTGGTTTCTTCCCATCAACTGTAAGTACGCTGTTAGCAGAAAATTTCAAAGTTTCTGAA 960
consensus_8810#1 ------------------------------------------------------------
consensus_8810#0 TTAGTATGTTCGTCTCTAAGATATGACTCCAAGGTAACAAGAGACTTTTTGCATGTTTCA 1020
consensus_8810#1 ------------------------------------------------------------
consensus_8810#0 GAAGCTGACATTTTACGATCACAAATTTAATGTCTTCGGATTACTCGTTAAGGAATTTGT 1080
consensus_8810#1 ------------------------------------------------------------
consensus_8810#0 TAAACTTCTATATTTATTAAACANATAATAATAGTAGTAACTACTATAGGATATTTATAG 1140
consensus_8810#1 ------------------------------------------------------------
consensus_8810#0 CCTTTTGTCACTTAAATACCAAAGTAAACTCTAGCCCTTTATTGCTGTCTAGAGCAAATA 1200
consensus_8810#1 ------------------------------------------------------------
consensus_8810#0 AAATATACTTTATTTTTCTCAGTGTATTGAAGCCATCAGTAATGTGGCACTTGTAGTCTG 1260
consensus_8810#1 ------------------------------------------------------------
consensus_8810#0 AGGATGCTCTTACTCCAATGTTGAACGATGGCACAAGGAAACAAGGGTGCGATTCATAGG 1320
consensus_8810#1 ------------------------------------------------------------
consensus_8810#0 TATTTGTTCAGCAAATTAA 1339
consensus_8810#1 -------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||