These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8827#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 645 fasta sequence [CGGTAGCCGAAATCTGTGTTTTCTGTTGTGCATGTGAATCATGGATGTTTCATAATATTTTTTTCAGTTCGATAAGCTTTTTTAAAATCAAGATTCTGTTTCTGTCTTCTATTTTTTTAGGTTGCTGTATCCCGACCTTTCGACGTTGGACGTCTTGATGAACTTGAAAAACTTGTTACCAGTCTTGTTAGTCGCATATCAGATCTGGAATCACGGATAAGCACTATGAAGTTGAGTAATGATTCTCATGATAAAGTTGGAGAAAAATCTGATGCAGAGCTTGATCTTTTTGCTTCAGACAGCGAGGAGGATAGAGAAGCTGAGCGTATCAGGAGTGAGAGAGAAGCCATGTACCTTGCAAAAAAAGCTCTAAAGCCCGTTGTGGTGGCAAAGTCAAATATCACACTCGAAGTGAAACCATGGGATGATGAAGTAAATATGGAAGAACTTACCTCTATGGTGAAAGGTATTAAAGCAGATGGCCTTTTGTGGGGTGCATCCAAACTAGTGCCTATCGCTTTTGGTATAAAAAAGCTCCAAATCTGCTGTGTCGTTGAAGATGACAAGGTTGGAACTGACTTCCTCGAAGAATCTATAAAAGAGTTTACGGAACATGTCCAATCTGTAGATATTGTATCATTCAAC] [+] EMBL CD112632 [CGGTAGCCGAAATCTGTGTTTTCTGTTGTGCATGTGAATCATGGATGTTTCATAATATTTTTTTCAGTTCGATAAGCTTTTTTAAAATCAAGATTCTGTTTCTGTCTTCTATTTTTTTAGGTTGCTGTATCCCGACCTTTCGACGTTGGACGTCTTGATGAACTTGAAAAACTTGTTACCAGTCTTGTTAGTCGCATATCAGATCTGGAATCACGGATAAGCACTATGAAGTTGAGTAATGATTCTCATGATAAAGTTGGAGAAAAATCTGATGCAGAGCTTGATCTTTTTGCTTCAGACAGCGAGGAGGATAGAGAAGCTGAGCGTATCAGGAGTGAGAGAGAAGCCATGTACCTTGCAAAAAAAGC ] [+] EMBL CD137881 [ GAACTTGAAAAACTTGTTACCAGTCTTGTTAGTCGCATATCAGATCTGGAATCACGGATAAGCACTATGAAGTTGAGTAATGATTCTCATGATAAAGTTGGAGAAAAATCTGATGCAGAGCTTGATCTTTTTGCTTCAGACAGCGAGGAGGATAGAGAAGCTGAGCGTATCAGGAGTGAGAGAGAAGCCATGTACCTTGCAAAAAAAGCTCTAAAGCCCGTTGTGGTGGCAAAGTCAAATATCACACTCGAAGTGAAACCATGGGATGATGAAGTAAATATGGAAGAACTTACCTCTATGGTGAAAGGTATTAAAGCAGATGGCCTTTTGTGGGGTGCATCCAAACTAGTGCCTATCGCTTTTGGTATAAAAAAGCTCCAAATCTGCTGTGTCGTTGAAGATGACAAGGTTGGGACTGACTTCCTCGAAGAATCTATAAAAGAGTTTACGGAACATGTCC ] [-] EMBL CD161549 [ AGGATAGAGAAGCTGAGCGTATCAGGAGTGAGAGAGAAGCCATGTACCTTGCAAAAAAAGCTCTAAAGCCCGTTGTGGTGGCAAAGTCAAATATCACACTCGAAGTGAAACCATGGGATGATGAAGTAAATATGGAAGAACTTACCTCTATGGTGAAAGGTATTAAAGCAGATGGCCTTTTGTGGGGTGCATCCAAACTAGTGCCTATCGCTTTTGGTATAAAAAAGCTCCAAATCTGCTGTGTCGTTGAAGATGACAAGGTTGGAACTGACTTCCTCGAAGAATCTATAAAAGAGTTTACGGAACATGTCCAATCTGTAGATATTGTATCATTCAAC] [-] EMBL CD161565 [ AGGATAGAGAAGCTGAGCGTATCAGGAGTGAGAGAGAAGCCATGTACCTTGCAAAAAAAGCTCTAAAGCCCGTTGTGGTGGCAAAGTCAAATATCACACTCGAAGTGAAACCATGGGATGATGAAGTAAATATGGAAGAACTTACCTCTATGGTGAAAGGTATTAAAGCAGATGGCCTTTTGTGGGGTGCATCCAAACTAGTGCCTATCGCTTTTGGTATAAAAAAGCTCCAAATCTGCTGTGTCGTTGAAGATGACAAGGTTGGAACTGACTTCCTCGAAGAATCTATAAAAGAGTTTACGGAACATGTCCAATCTGTAGATATTGTATCATTCAcc] consensusID : consensus_8827#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 511 fasta sequence [GTGGTCGAGATGGAGGCAGGTCTACTTGTGAGCGCACAGACACTTCAATTTCCTGACTATCCGGATATTGAGAAAGCTTATGTATCTCATCTGTCTTCATCTGCTCAATCGAAAGCTCCAGAAACACTGAAAACGGGGTCTTTGACACAAGAAATTCAGAAAGCTAGAGAGCATATCAAAACATCCTTGGATCGCGTTGCTGTATCCCGACCTTTCGACGTTGGACGTCTTGATGAACTTGAAAAACTTGTTACCAGTCTTGTTAGTCGCATATCAGATCTGGAATCACGGGAT-AGCACTATGAAGTTGAGTAATGATTCTCATGGTAAAGTTGGAGAAAAATCTGATGCAGAGCTTGATCTTTTTGCTTCAGACAGCGAGGAGGATAGAGAAGCTGAGCGTATCAGGAGTGAGAGAGAAGCCATGTACCTTGCAAAAAAAGCTCCAAATCTGCTGTGTCGTTGAAGATGACAAGGTTGGAACTGACTTCCTCGAAGAGTCTATAAAAGAG] [+] EMBL CD078138 [GTGGTCGAGATGGAGGCAGGTCTACTTGTGAGCGCACAGACACTTCAATTTCCTGACTATCCGGATATTGAGAAAGCTTATGTATCTCATCTGTCTTCATCTGCTCAATCGAAAGCTCCAGAAACACTGAAAACGGGGTCTTTGACACAAGAAATTCAGAAAGCTAGAGAGCATATCAAAACATCCTTGGATCGCGTTGCTGTATCCCGACCTTTCGACGTTGGACGTCTTGATGAACTTGAAAAACTTGTTACCAGTCTTGTTAGTCGCATATCAGATCTGGAATCACGGGAT AGCACTATGAAGTTGAGTAA ] [+] EMBL CD191572 [ GTCGAGATGGAGGCAGGTCTACTTGTGAGCGCACAGACACTTCAATTTCCTGACTATCCGGATATTGAGAAAGCTTATGTATCTCATCTGTCTTCATCCGCTCAATCGAAAGCTCCAGAAACACTGAAAACGGGGTCTTTGACACAAGAAATTCAGAAAGCTAGAGAGCATATCAAAACATCCTTGGATCGCGTTGCTGTATCCCGACCc ] [+] EMBL CD154301 [ GAACTTGAAAAACTTGTTACCAGTCTTGTTAGTCGCATATCAGATCTGGAATCAC GGATAAGCACTATGAAGTTGAGTAATGATTCTCATGGTAAAGTTGGAGAAAAATCTGATGCAGAGCTTGATCTTTTTGCTTCAGACAGCGAGGAGGATAGAGAAGCTGAGCGTATCAGGAGTGAGAGAGAAGCCATGTACCTTGCAAAAAAAGCTCCAAATCTGCTGTGTCGTTGAAGATGACAAGGTTGGAACTGACTTCCTCGAAGAGTCTATAAAAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8827#0 ------------------------------------------------------------ consensus_8827#1 GTGGTCGAGATGGAGGCAGGTCTACTTGTGAGCGCACAGACACTTCAATTTCCTGACTAT 60 consensus_8827#0 ----CGGTAGCCGAAATCTGTGTTTTCTGT---TGTGCATGTGAATCAT-GGATGTTTCA 52 consensus_8827#1 CCGGATATTGAGAAAGCTTATGTATCTCATCTGTCTTCATCTGCTCAATCGAAAGCTCCA 120 * * ** * *** * * * * *** ** ** * * * * ** consensus_8827#0 TAA-TATTTTTTTCAG----TTCGATA--AGCTTTTTTAAAATCAAGATTCTGTTTCTGT 105 consensus_8827#1 GAAACACTGAAAACGGGGTCTTTGACACAAGAAATTCAGAAAGCTAGAGAGCATATCAAA 180 ** * * * * ** ** * ** ** *** * *** * ** consensus_8827#0 CTTCTATTTTTTTAGGTTGCTGTATCCCGACCTTTCGACGTTGGACGTCTTGATGAACTT 165 consensus_8827#1 ACATCCTTGGATCGCGTTGCTGTATCCCGACCTTTCGACGTTGGACGTCTTGATGAACTT 240 ** * ********************************************* consensus_8827#0 GAAAAACTTGTTACCAGTCTTGTTAGTCGCATATCAGATCTGGAATCACGGATAAGCACT 225 consensus_8827#1 GAAAAACTTGTTACCAGTCTTGTTAGTCGCATATCAGATCTGGAATCACGGGATAGCACT 300 *************************************************** ****** consensus_8827#0 ATGAAGTTGAGTAATGATTCTCATGATAAAGTTGGAGAAAAATCTGATGCAGAGCTTGAT 285 consensus_8827#1 ATGAAGTTGAGTAATGATTCTCATGGTAAAGTTGGAGAAAAATCTGATGCAGAGCTTGAT 360 ************************* ********************************** consensus_8827#0 CTTTTTGCTTCAGACAGCGAGGAGGATAGAGAAGCTGAGCGTATCAGGAGTGAGAGAGAA 345 consensus_8827#1 CTTTTTGCTTCAGACAGCGAGGAGGATAGAGAAGCTGAGCGTATCAGGAGTGAGAGAGAA 420 ************************************************************ consensus_8827#0 GCCATGTACCTTGCAAAAAAAGCTCTAAAGCCCGTTGTGGTGGCAAAGTCAAATATCACA 405 consensus_8827#1 GCCATGTACCTTGCAAAAAAAGCTCCAAA-TCTGCTGTGTCGTTGAAGATGA---CAAGG 476 ************************* *** * * **** * *** * * consensus_8827#0 CTCGAAGTGAAACCATGGGATGATGAAGTAAATATGGAAGAACTTACCTCTATGGTGAAA 465 consensus_8827#1 TTGGAACTGACTTCCTCGAAGAGTCTATAAAAGAG------------------------- 511 * *** *** * * * * * * *** * consensus_8827#0 GGTATTAAAGCAGATGGCCTTTTGTGGGGTGCATCCAAACTAGTGCCTATCGCTTTTGGT 525 consensus_8827#1 ------------------------------------------------------------ consensus_8827#0 ATAAAAAAGCTCCAAATCTGCTGTGTCGTTGAAGATGACAAGGTTGGAACTGACTTCCTC 585 consensus_8827#1 ------------------------------------------------------------ consensus_8827#0 GAAGAATCTATAAAAGAGTTTACGGAACATGTCCAATCTGTAGATATTGTATCATTCAAC 645 consensus_8827#1 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||