These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence [TAAACATTTTATGTAGAAAAAAACTAATCATAACAGTAAAGAAATAATCCGTACAATTACAATCATTAGATCTTCTGACAAATACTTGTTCATAATTAATATAAAATAAAATTAATAGGGGAATTGGAAAACAATAATCTTAAGTTATTTTAAATGTTATTACCCTTAAAAAATATTGGATAACGTAACAATATTAGTAATAATCTAGAATAGGTAACAAAAATTTTAAAAGACTATCGTTTTTACAATTAAAAAATATATAATTACAGTGAGATGAAATATATAATAACACTATAAATTAGCGAAATGACCACTGGAAATATTCTGTTAAACTTTAGACCGGAA] [+] EMBL AI976433 [TAAACATTTTATGTAGAAAAAAACTAATCATAACAGTAAAGAAATAATCCGTACAATTACAATCATTAGATCTTCTGACAAATACTTGTTCATAATTAATATAAAATAAAATTAATAGGGGAATTGGAAAACAATAATCTTAAGTTATTTTAAATGTTATTACCCTTAAAAAATATTGGATAACGTAACAATATTAGTAATAATCTAGAATAGGTAACAAAAATTTTAAAAGACTATCGTTTTTACAATTAAAAAATATATAATTACAGTGAGATGAAATATATAATAACACTATAAATTAGCGAAATGACCACTGGAAATATTCTGTTAAACTTTAGACCGGAA] consensusID : consensus_883#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [TAACCTTTTGTGGAAAAAAACATGGCATATACGCTTGAGATATATTCCGTCAAATTACAATCATTAGATTTTGTGGGAAATCCTTGTCACATAATTATTTAAAATAAATTTAGGGGGGAATTGGAAACAATAATCTTAAGTTATTTTAAATGTTAATTACCCTTAAAAATATTGGATAACGTTAACAATATCAGTAATAATTCAGAAGAGGTAACAAAAATATTAAAAGACTATCGATTTTACAATTAAAAAATATATAAATACAATGAGATGAAATAATAATAACACTATAAATTAGCGA] [-] EMBL AW018293 [TAACCTTTTGTGGAAAAAAACATGGCATATACGCTTGAGATATATTCCGTCAAATTACAATCATTAGATTTTGTGGGAAATCCTTGTCACATAATTATTTAAAATAAATTTAGGGGGGAATTGGAAACAATAATCTTAAGTTATTTTAAATGTTAATTACCCTTAAAAATATTGGATAACGTTAACAATATCAGTAATAATTCAGAAGAGGTAACAAAAATATTAAAAGACTATCGATTTTACAATTAAAAAATATATAAATACAATGAGATGAAATAATAATAACACTATAAATTAGCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_883#0 TAAACATTTTATGTAGAAAAAAACTAATCATA-ACAGTAAAGAAATAATCCGTACAATTA 59 consensus_883#1 ---TAACCTTTTGTGGAAAAAAACATGGCATATACGCTTGAGATATATTCCGTCAAATTA 57 * ** *** ********* **** ** * *** *** ***** ***** consensus_883#0 CAATCATTAGATCTTCTGACAAATACTTGTT-CATAATTAATATAAAATAAAATTAATAG 118 consensus_883#1 CAATCATTAGATTTTGTGGGAAATCCTTGTCACATAATTA-TTTAAAATAAATTTAG-GG 115 ************ ** ** **** ***** ******** * ********* *** * consensus_883#0 GGGAATTGGAAAACAATAATCTTAAGTTATTTTAAATGTTATTACCCTTAAAAAATATTG 178 consensus_883#1 GGGAATTGGAAA-CAATAATCTTAAGTTATTTTAAATGTTAATTACCCTTAAAAATATTG 174 ************ **************************** * ** * ********** consensus_883#0 GATAACGT-AACAATATTAGTAATAATCTAGAATAGGTAACAAAAATTTTAAAAGACTAT 237 consensus_883#1 GATAACGTTAACAATATCAGTAATAATTCAGAAGAGGTAACAAAAATATTAAAAGACTAT 234 ******** ******** ********* **** ************* ************ consensus_883#0 CGTTTTTACAATTAAAAAATATATAATTACAGTGAGATGAAATATATAATAACACTATAA 297 consensus_883#1 CGATTTTACAATTAAAAAATATATAAATACAATGAGATGAAATA-ATAATAACACTATAA 293 ** *********************** **** ************ *************** consensus_883#0 ATTAGCGAAATGACCACTGGAAATATTCTGTTAAACTTTAGACCGGAA 345 consensus_883#1 ATTAGCGA---------------------------------------- 301 ******** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||