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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8832#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1046 fasta sequence
[AGGGTTATCATCATCATCATCATCCTCTTCTTCTTCCTCCTCTTGTAATACAACTATACATTCAAATCAATGACTGAAATGATGGTATACTTCGTTACTCTGTTGAATTTGATATTTGCTATGAGATTCATTTAGATTATTATTGAATTCGATTATCTTTTGATATCTTGGATGTGTGTGTGATGATGATGATGCTAATGATGATGCCTAAAAAGTAGATTATTTACAGAGTATGATTTCCAAATGTCAATTTCCTTATCCTTTTTTTCATATTCATTAGTAATTAGGTTTTCTAGGCATTAAAAAACTGTCTCATTGAATTGTCGACAGAATCATCATATTCTGTCCTGTCTCTTTTTCTGTCTTATTGTTCCTAGACCCTTTTTTTCATCATAGAATGAATGATTGTTGTTAAGCATAGTCTTTTTTTTTACTCATTCCTGGGCTTTTGTTGTCGTTGTTGTT-GTTGTTGTTTTGTAAACGAAAGATAAAACAGTCTTATCTATACATAGTTTCTATTCAGTGTCTAGTAGCTCTTTTTGTTAAATCAGACTTGCCAGTACATTCTGATGCATATTCATATATACAAATATGCATATCAACTATTTATTGTAACCGCTTAAGAAGAGATTAAAATGTAATACTTAGCTTTCAACCAGTAGGTTGTGAGTTCGAAC--CCCC--T-CCCCCCACACATA-CACTCCCCTTTAGCTTACTTAGGTTTAGACAGTTAGGCTATACATATATAATATCACTAATACACATGAATGAGTACAGTCCAAAGTCGAGTGAATACAGTCTATACTAGGTATTTCATTCCTGTTAGGATTGACATGTTTGTTTTTTCTAATTCTTCTTATATTGCTTTTGTCACCATACATTCTGACTGACATTTGTTATGTACTGTTTTTTTTTCTAAATGTTTTCATATACTACTAACCTTTGTTTTTATTCTTATTTACTTTGTTAATGAATTTTGTTTAGAATTTCTTTCATTGTGTATTTTTTACGTGGAATGATTATGTTATACGAAACAATAAAGGTTATTA]
[+] EMBL CD082919 [AGGGTTATCATCATCATCATCATCCTCTTCTTCTTCCTCCTCTTGTAATACAACTATACATTCAAATCAATGACTGAAATGATGGTATACTTCGTTACTCTGTTGAATTTGATATTTGCTATGAGATTCATTTAGATTATTATTGAATTCGATTATCTTTTGATATCTTGGATGTGTGTGTGATGATGATGATGCTAATGATGATGCCTAAAAAGTAGATTATTTACAGAGTATGATTTCCAAATGTCAATTTCCTTATCCTTTTTTTCATATTCATTAGTAATTAGGTTTTCTAGGCATTAAAAAACTGTCTCATTGAATTGTCGACAGAATCATCATATTCTGTCCTGTCTCTTTTTCTGTCTTATTGTTCCTAGACCCTTTTTTTCATCATAGAATGAATGATTGTTGTTAAGCATAGTCTTTTTTTTTACTCATTCCTGGGCTTTTGTTGTCGTTGTTGTT GTTGTTGTTTTGTAAACGAAAGATAAAACAGTCTTATCTATACATAGTTTCTATTCAGTGTCTAGTAGCTCTTTTTGTTAAATCAGACTTGCCAGTACATTCTGATGCATATTCATATATACAAATATGCATATCAACTATNTATTGntac ]
[+] EMBL CD080515 [ GTTACTCTGTTGAATTTGATATTTGCTATGAGATTCATTTAGATTATTATTGAATTCGATTATCTTTTGATATCTTGGATGTGTGTGTGATGATGATGATGCTAATGATGATGCCTAAAAAGTAGATTATTTACAGAGTATGATTTCCAAATGTCAATTTCCTTATCCTTTTTTTCATACTCATTAGTAATTAGGTTTTCTAGGCATTAAAAAACTGTCTCATTGAATTGTCGACAGAATCATCATATTCTGTCCTGTCTCTTTTTCTGTCTTATTGTTCCTAGACCCTTTTTTTCATCATAGAATGAATGATTGTTGTTAAGCATAGTCTTTTTTTTTACTCATTCCTGGGCTTTTGTTGTCGTTGTTGTT GTTGTTGTTTTGTAAACGAAAGATAAAACAGTCTTATCTATACATAGTTTCTATTCAGTGTCTAGTAGCTCTTTTTGTTAAATCAGACTTGCCAGTACATTCTGATGCATATTCATATATACAAATATGCATATCAACTATTTATTGTAACCGCTTAAGAAGAGATTAAAATGTAATACTTAGCTTTCAACCAGTAGGTTGTGAGTTCGAAC CCNC T CCCCCa ]
[-] EMBL CD076502 [ CTTTTGTGNTCGTTG TGTTGGTTGTTG TTTGTAAACGAAAGATAAAACAGTCTTATCTATACATAGTTTCTATTCAGTGTCTAGTAGCTCTTTTTGTTAAATCAGACTTGCCAGTACATTCTGATGCATATTCATATATACAAATATGCATATCAACTATTTATTGTAACCGCTTAAGAAGAGATTAAAATGTAATACTTAGCTTTCAACCAGTAGGTTGTGAGTTCGAACCNCCCC TNCCCCCCACACATACCACTCCCCTTTAGCTTACTTAGGTTTAGACAGTTAGGCTATACATATATAATATCACTAATACACATGAATGAGTACAGTCCAAAGTCGAGTGAATACAGTCTATACTAGGTATTTCATTCCTGTTAGGATTGACATGTTTGTTTTTTCTAATTCTTCTTATATTGCTTTTGTCACCATACATTCTGACTGACATTTGTTATGTACTGTTTTTTTTTCTAAATGTTTTCATATACTACTAACCTTTGTTTTTATTCTTATTTACTTTGTTAATGAATTTTGTTTAGAATTTCTTTCATTGTGTATTTTTTACGTGGAATGATTATGTTATACGAAACAATAAAGGT ]
[-] EMBL CD074427 [ CTATACATAGTTTCTATTCAGTGTCTAGTAGCTCTTTTTGTTAAATCAGACTTGCCAGTACATTTTGATGCATATTCATATATACAAATATGCATATCAACTATTTATTGTAACCGCTTAAGAAGAGATTAAAATGTAATACTTAGCTTTCAACCAGTAGGTTGTGAGTTCGAAC CCCCTTT CCCCCCACACATA CACTCCCCTTTAGCTTACTTAGGTTTAGACAGTTAGGCTATACATATATAATATCCCTAATACACATGAATGAGTACAGTCCAAAGTCGAGTGAATACAGTCTATACTAGGTATTTCATTCCTGTTAGGATTGACATGTTTGTTTTTTCTAATTCTTCTTATATTGCTTTTGTCCCCATACATTTTGACTGACATTTG ]
[-] EMBL CD074426 [ ATATACTACTAACCTTTGTTTTTATTCTTATTTACTTTGTTAATGAATTTTGTTTAGAATTTCTTTCATTGTGTATTTTTTACGTGGAATGATTATGTTATACGAAACAATAAAGGTTATTA]
consensusID : consensus_8832#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence
[ATGGTTTTGTTCTAGGCATCATCATCCAGAAGATCATAAATGTAATTTCAAATTTAAAACAACAGTCAATTGAATCAATGACTGAAATGATGGTATACTTCGTTACTCTGTTGAATTTGATATTTGCTATGAGATTCATTTAGATTATTATTGAATTCGATTATCTTTTGATATCTTGGATGTGTGTGTGATGATGATGATGCTAATGATGATGCCTAAAAAGTAGATTATTTACAGAGTATGATTTCCAAATGTCAATTTCCTTATCCTTTTTTTCATATTCATTAGTAATTAGGTTTTCTAGGCATTAAAAAACTGTCTCATTGAATTGTCGACAGAATCATCATATTCTGT]
[-] EMBL CD185729 [ATGGTTTTGTTCTAGGCATCATCATCCAGAAGATCATAAATGTAATTTCAAATTTAAAACAACAGTCAATTGAATCAATGACTGAAATGATGGTATACTTCGTTACTCTGTTGAATTTGATATTTGCTATGAGATTCATTTAGATTATTATTGAATTCGATTATCTTTTGATATCTTGGATGTGTGTGTGATGATGATGATGCTAATGATGATGCCTAAAAAGTAGATTATTTACAGAGTATGATTTCCAAATGTCAATTTCCTTATCCTTTTTTTCATATTCATTAGTAATTAGGTTTTCTAGGCATTAAAAAACTGTCTCATTGAATTGTCGACAGAATCATCATATTCTGT]
consensusID : consensus_8832#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 188 fasta sequence
[TTTGTTTTTTTCTAATTCTTCTTATATTGCTTTTGTCACCATACATTCTGNACTGNACATTTGTTATGTACTGGTTTTTTTTTCCTAAATGTTTCCATATACNACNAACCTTNGTTTTNATCCTNATTTACTTNGTTAATNAATTTGGTTNAAAATTCCTTCCATTGTGTATTTTTTACGTGGAAATG]
[+] EMBL AA559761 [TTTGTTTTTTTCTAATTCTTCTTATATTGCTTTTGTCACCATACATTCTGNACTGNACATTTGTTATGTACTGGTTTTTTTTTCCTAAATGTTTCCATATACNACNAACCTTNGTTTTNATCCTNATTTACTTNGTTAATNAATTTGGTTNAAAATTCCTTCCATTGTGTATTTTTTACGTGGAAATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8832#0 AGGGTTATCATCATCATCATCATCCTCTTCTTCTTCCTCCTCTTGTAATACAACTATACA 60
consensus_8832#2 ------------------------------------------------------------
consensus_8832#1 ------------------------------------------------------------
consensus_8832#0 TTCAAATCAATGACTGAAATGATGGTATACTTCGTTACTCTGTTGAATTTGATATTTGCT 120
consensus_8832#2 ------------------------------------------------------------
consensus_8832#1 ------------------------------------------------------------
consensus_8832#0 ATGAGATTCATTTAGATTATTATTGAATTCGATTATCTTTTGATATCTTGGATGTGTGTG 180
consensus_8832#2 ------------------------------------------------------------
consensus_8832#1 ------------------------------------------------------------
consensus_8832#0 TGATGATGATGATGCTAATGATGATGCCTAAAAAGTAGATTATTTACAGAGTATGATTTC 240
consensus_8832#2 ------------------------------------------------------------
consensus_8832#1 ------------------------------------------------------------
consensus_8832#0 CAAATGTCAATTTCCTTATCCTTTTTTTCATATTCATTAGTAATTAGGTTTTCTAGGCAT 300
consensus_8832#2 ------------------------------------------------------------
consensus_8832#1 ------------------------------------------------------------
consensus_8832#0 TAAAAAACTGTCTCATTGAATTGTCGACAGAATCATCATATTCTGTCCTGTCTCTTTTTC 360
consensus_8832#2 ------------------------------------------------------------
consensus_8832#1 ------------------------------------------------------------
consensus_8832#0 TGTCTTATTGTTCCTAGACCCTTTTTTTCATCATAGAATGAATGATTGTTGTTAAGCATA 420
consensus_8832#2 ------------------------------------------------------------
consensus_8832#1 ------------------------------------------------------------
consensus_8832#0 GTCTTTTTTTTTACTCATTCCTGGGCTTTTGTTGTCGTTGTTGTTGTTGTTGTTTTGTAA 480
consensus_8832#2 ------------------------------------------------------------
consensus_8832#1 ------------------------------------------------------------
consensus_8832#0 ACGAAAGATAAAACAGTCTTATCTATACATAGTTTCTATTCAGTGTCTAGTAGCTCTTTT 540
consensus_8832#2 ------------------------------------------------------------
consensus_8832#1 ------------------------------------------------------------
consensus_8832#0 TGTTAAATCAGACTTGCCAGTACATTCTGATGCATATTCATATATACAAATATGCATATC 600
consensus_8832#2 ------------------------------------------------------------
consensus_8832#1 ------------------------------------------------------------
consensus_8832#0 AACTATTTATTGTAACCGCTTAAGAAGAGATTAAAATGTAATACTTAGCTTTCAACCAGT 660
consensus_8832#2 ------------------------------------------------------------
consensus_8832#1 ------------------------------------------------------------
consensus_8832#0 AGGTTGTGAGTTCGAACCCCCTCCCCCCACACATACACTCCCCTTTAGCTTACTTAGGTT 720
consensus_8832#2 ------------------------------------------------------------
consensus_8832#1 ------------------------------------------------------------
consensus_8832#0 TAGACAGTTAGGCTATACATATATAATATCACTAATACACATGAATGAGTACAGTCCAAA 780
consensus_8832#2 ------------------------------------------------------------
consensus_8832#1 ------------------------------------------------------------
consensus_8832#0 GTCGAGTGAATACAGTCTATACTAGGTATTTCATTCCTGTTAGGATTGACATGTTTGTTT 840
consensus_8832#2 -----------------------------------------------------TTTGTTT 7
consensus_8832#1 -----------------------------------------------------ATGGTTT 7
* ****
consensus_8832#0 TTT-CTAATTCTTCTTAT-------ATTGCTTTTGTCACCATACATTCTGACT--GA--C 888
consensus_8832#2 TTTTCTAATTCTTCTTAT-------ATTGCTTTTGTCACCATACATTCTGNACTGNA--C 58
consensus_8832#1 TGTTCTAGGCATCATCATCCAGAAGATCATAAATGTAATTTCAAATTTAAAACAACAGTC 67
* * *** * * ** ** *** * * *** * *
consensus_8832#0 ATTTG--TTATGTACTG--TTTTTTTTTCTAAATGTTTTCATATACTACT-AACCTTTGT 943
consensus_8832#2 ATTTG--TTATGTACTGGTTTTTTTTTCCTAAATGTTTCCATATACNACN-AACCTTNGT 115
consensus_8832#1 AATTGAATCAATGACTGAAATGATGGTATACTTCGTTACTCTGTTGAATTTGATATTTGC 127
* *** * * **** * * * *** * * * * ** *
consensus_8832#0 TTTTATTCTTATTTACTTTGTTAATGAATTTTGTTTAGAATTTCTTTCATTG-TGTATTT 1002
consensus_8832#2 TTTNATCCTNATTTACTTNGTTAATNAATTTGGTTNAAAATTCCTTCCATTG-TGTATTT 174
consensus_8832#1 TATGAGATTCATTTAGATTATTATTGAATTCGATTATCTTTTGATATCTTGGATGTGTGT 187
* * * * ***** * *** * **** ** ** * * * * *** * *
consensus_8832#0 TTTACG-TGGAATGATTATGTTATACGAAACAATAAAGGTTATTA--------------- 1046
consensus_8832#2 TTTACG-TGGAAATG--------------------------------------------- 188
consensus_8832#1 GTGATGATGATGATGCTAATGATGATGCCTAAAAAGTAGATTATTTACAGAGTATGATTT 247
* * * **
consensus_8832#0 ------------------------------------------------------------
consensus_8832#2 ------------------------------------------------------------
consensus_8832#1 CCAAATGTCAATTTCCTTATCCTTTTTTTCATATTCATTAGTAATTAGGTTTTCTAGGCA 307
consensus_8832#0 -----------------------------------------------
consensus_8832#2 -----------------------------------------------
consensus_8832#1 TTAAAAAACTGTCTCATTGAATTGTCGACAGAATCATCATATTCTGT 354
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||