These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8869#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 936 fasta sequence [CAACTAGCACTGATCTTGTAATTTCAAAAGCAAACTGCGAAAAGAATCAGTCTGAAAATAAAATTGAACAGACATTATTAAGAGAGAATATTACACAAAAATCAGATAATCAATCATCGTTCAAATCACCGATACAAAAACAACAACAGCCACAACAACCTGATTGCCTATCACCTAAACGAAACTATATAATCTCTTTCACTGGCCTGTCATTAGAAGAACGAGATCGCTATGCTGAAATTGTAGAGCGACTAGGTGGAGAAGTAGATAATCTGACTACGTTAAGCGAGAAAACTACACATCTAATTGTGTATGCACCAACACGAAGCGAAAAATGCCTTATCTGTCTCGCTTCTGGCAAGTGGATGTTGCACAAATCCTACTTAGACGCATGCTCACGGGAATCCTGTTGGGTTGATGAAGCAGCATATGAGTGGGGTGGTCCTGGTACTGAGCCCTTATTGATGCAGTTAAGTCCGTTTCCTTGCCCACCCGGTGGTCCTACATTATCACATCAACAGAAAGCTGCTCAGATTAGAGATCTAGCTAGATCTGCACGTCGTTGGCGGTTGTCTGGAGGCAAAGCATTTCATAATTGGAAGGTTATTTTTGGACCGGGTTGTGATAAAGAAAGTAGTTTTAGACGTATATTCGAAGCTGGTGGAGGAAAAGTATTATCAAGCAGTCCACCCTATCCTCCTGCTCATGAAGTTACTCATGCATTTGTTAAAATAAATAATAATTCTGCCATCATACCGTCCACTTTACCGCGTAACTACTCATGGCTGCGCATAGATTATCTTTGTTCCTATTTAAGTTCTGGTGAAAGAAATCTCAAAATCAGAATTCACTCTTTAATCCATCCAGTTTTACAGCTATTCCAATGTATCAATTCCTGATGGAGATTAATCTGATCAATCAATAAAACAATCAACA] [-] EMBL CD147710 [CAACTAGCACTGATCTTGTAATTTCAAAAGCAAACTGCGAAAAGAATCAGTCTGAAAATAAAATTGAACAGACATTATTAAGAGAGAATATTACACAAAAATCAGATAATCAATCATCGTTCAAATCACCGATACAAAAACAACAACAGCCACAACAACCTGATTGCCTATCACCTAAACGAAACTATATAATCTCTTTCACTGGCCTGTCATTAGAAGAACGAGATCGCTATGCTGAAATTGTAGAGCGACTAGGTGGAGAAGTAGATAATCTGACTACGTTAAGCGAGAAAACTACACATCTAATTGTGTATGCACCAACACGAAGCGAAAAATGCCTTATCTGTCTCGCTTCTGGCAAGTGGATGTTGCACAAATCCTACTTAGACGCATGCTCACGGGAATCCTGTTGGGTTGATGAAGCAGCATATGAGTGGGGTGG ] [+] EMBL CD115861 [ ACACATCTAATTGTGTATGCACCAACACGAAGCGAAAAATGCCTTATCTGTCTCGCTTCTGGCAAGTGGATGTTGCACAAATCCTACTTAGACGCATGCTCACGGGAATCCTGTTGGGTTGATGAAGCAGCATATGAGTGGGGTGGTCCTGGTACTGAGCCCTTATTGATGCAGTTAAGTCCGTTTCCTTGCCCACCCGGTGGTCCTACATTATCACATCAACAGAAAGCTGCTCAGATTAGAGATCTAGCTAGATCTGCACGTCGTTGGCGGTTGTCTGGAGGCAAAGCATTTCATAATTGGAAGGTTATTTTTGGACCGGGTTGTGATAAAGAAAGTAGTTTTAGACGTATATTCGAAGCTGGTGGAGGAAAAGTATTATCAAGCAGTCCACCCTATCCTCCTGCTCATGAAGTTACTCATGCATTTGTTAAAATAAATAATAATTCTGCCATCATACCGTCCACTTTACCGCGTAACTACTCATGGCTGCGCATAGATTATCTTTGTTCCTATTTAAGTTCTGGTGAAAGAAATCTCAAAATCAGAATTCACTCTTTAATCCATCCAGTTTTACAGCTATTCCAATGTATCAATTCCTGATGGAGATTAATCTGATCAATCAATAAAACAATCAACA] consensusID : consensus_8869#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 716 fasta sequence [TTATTAAGACCGCAAACTCCTGGTACTAAAGGTGGACCGGATCCATGTAAAGATAGCATCTGGGATTCAGGTTGAGATCCTATAGAGTCATTCGACTTCAAACGCGAACTGTTTACGGATATGTCACTGCGTATTCCATTTCTAGGTTCCAGCTGAACAAAAATGACTTTTTCACGCTCCAGATTAGCTTCTTCTATGGTAGCATCTTCATCTTCCAGTTCTTCAAATTCGTTTTGTTCATTGTGTATTGATAAGTGGACATTCACGCCAGGTGCTGCTTTAAGGTGTTGTGCGACTATCGCTTTAAGTTCTCTTATTGTCTGAAATTTGCAATATGTCCCTTCAAACAGCAAAGTGGCACTTGAGTTTGAAGGATTTAGGTAGAATGAGTAGTGGGGTGGATATATTTCGATTTCCGCTGACTTTGGTGCTTGGATGGCACGCCGTTCGAAAACAGAAATGTCTGTATGTGTACAACCATAAAAATCAACAAACAGCTTCCACACATTCCTAGGTATTAACGTGATGTCACTTTCCAAGAGCAAGTTTTCTTTTAATTTTCCATCATATAAAATGTCACTGTTATCAACTTTTCCTGGATACTCTTCAGAGGTTTCGTCCACTATTCCACTTTTGGAAACCGAGTCCACAAATTCTTCCCATTTCGTCCACCAGTTAAGAGACAGGATATACCATAAGCCTNCTTTTGTTATCTC] [-] EMBL CD125748 [TTATTAAGACCGCAAACTCCTGGTACTAAAGGTGGACCGGATCCATGTAAAGATAGCATCTGGGATTCAGGTTGAGATCCTATAGAGTCATTCGACTTCAAACGCGAACTGTTTACGGATATGTCACTGCGTATTCCATTTCTAGGTTCCAGCTGAACAAAAATGACTTTTTCACGCTCCAGATTAGCTTCTTCTATGGTAGCATCTTCATCTTCCAGTTCTTCAAATTCGTTTTGTTCATTGTGTATTGATAAGTGGACATTCACGCCAGGTGCTGCTTTAAGGTGTTGTGCGACTATCGCTTTAAGTTCTCTTATTGTCTGAAATTTGCAATATGTCCCTTCAAACAGCAAAGTGGCACTTGAGTTTGAAGGATTTAGGTA ] [-] EMBL CD125733 [ CCATGTANAGATAGCATCTGGATTTCAGGTTGAGATCCTATAGAGTCATTCGACTTCAAACGCGAACTATTTACGGGTATGTCACTGCGTATTCCATTTCTAGGTTCCAGCTGAACAAAAATGACTTTTTCACGCTCCAGATTAGCTTCTTCTATGGTAGCATCTTCATCTTCCAGTTCTTCAAATTCGTTTTGTTCATTGTGTATTGATAAGTGGACATTCACGCCAGGTGCTGCTTTAAGGTGTTGTGCGACTATCGCTTTAAGTTCTCTTATTGTCTGAAATTTGCAATATGTCCCTTCAAACAGCAAAGTGGCACTTGAGTTTGAAGGATTTAGGTA ] [+] EMBL CD165419 [ CATCTTCATCTTCCAGTTCTTCAAATTCGTTTTGTTCATTGTGTATTGATAGGTGGACATTCACGCCAGGTGCTGCTTTAAGGTGTTGTGCGACTATCGCTTTAAGTTCTCTTATTGTCTGAAATTTGCAATATGTCCCTTCAAACAGCAAAGTGGCACTTGAGTTTGAAGGATTTAGGTAGAATGAGTAGTGGGGTGGATATATTTCGATTTCCGCTGACTTTGGTGCTTGGATGGCACGCCGTTCGAAAACAGAAATGTCTGTATGTGTACAACCATAAAAATCAACAAACAGCTTCCACACATTCCTAGGTATTAACGTGATGTCACTTTCCAAGAGCAAGTTTTCTTTTAATTTTCCATCATATAAAATGTCACTGTTATCAACTTTTCCTGGATACTCTTCAGAGGTTTCGTCCACTATTCCACTTTTGGAAACCGAGTCCACAAATTCTTCCCATTTCGTCCACCAGTTAAGAGACAGGATATACCATAAGCCTNCTTTTGTTATCTC] consensusID : consensus_8869#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [TGTAAAGATAGCATCTGGGATTCAGGTTGAGATCCTATAGAGTCATTCGACTTCAAACGCGAACTATTTACGGATATGTCACTGCGTATTCCATTTCTAGGTTCCAGCTGAACAAAAATGACTTTTTCACGCTCCAGATTAGCTTCTTCTATGGTAGCATCTTCATCTTCCAGTTCTTCAAATTCGTTTTGTTCATTGTGTATTGATAAGTGGACATTCACGCCAGGTGCTGCTTTAAGGTGTTGTGCGACTATCGCTTTAAGTTCTCTTATTGTCTGAAATTTGCAATATGTCCCTTCAAACAGCAAAGTGGCACTTGAGTTTGAAGGATTTAGGTAGAATGAGTAGTGGGGTGGTCCTGGTACTGAGCCCTTATTGATGCAGTTAAGTCCGTTTCCTTGTCCACCCGGTGGTCCTACATTATCACATCAACAGAAAGCTGCTCAGATTAGAGATCTAGCTAGATCTGCACGTCGTTGGCGGTTGTCTGGAGGCANAGCATTTCATAATTAGAAGGTTATTTTTGGACCTGGTTGTGATAAAGAAAGTAGTTTTAGACGTATTATCGAAGCTGGTGGAGGAAAGTATTATCAAGCA] [+] EMBL CD095701 [TGTAAAGATAGCATCTGGGATTCAGGTTGAGATCCTATAGAGTCATTCGACTTCAAACGCGAACTATTTACGGATATGTCACTGCGTATTCCATTTCTAGGTTCCAGCTGAACAAAAATGACTTTTTCACGCTCCAGATTAGCTTCTTCTATGGTAGCATCTTCATCTTCCAGTTCTTCAAATTCGTTTTGTTCATTGTGTATTGATAAGTGGACATTCACGCCAGGTGCTGCTTTAAGGTGTTGTGCGACTATCGCTTTAAGTTCTCTTATTGTCTGAAATTTGCAATATGTCCCTTCAAACAGCAAAGTGGCACTTGAGTTTGAAGGATTTAGGTAGAATGAGTAGTGGGGTGGTCCTGGTACTGAGCCCTTATTGATGCAGTTAAGTCCGTTTCCTTGTCCACCCGGTGGTCCTACATTATCACATCAACAGAAAGCTGCTCAGATTAGAGATCTAGCTAGATCTGCACGTCGTTGGCGGTTGTCTGGAGGCANAGCATTTCATAATTAGAAGGTTATTTTTGGACCTGGTTGTGATAAAGAAAGTAGTTTTAGACGTATTATCGAAGCTGGTGGAGGAAAGTATTATCAAGCA] consensusID : consensus_8869#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence [ACAACTAGCACTGATCTTGTAATTTCAAAAGCAAACTGCGAAAAGAATCAGTCTGAAAATAAAATTGAACAGACATTATTAAGAGAGAATATTACACAAAAATCAGATAATCAATCATCGTTCAAATCACCGATACAAAAACAACAACAGCCACAACAACCTGATTGCCTATCACCTAAACGAAACTATATAATCTCTTTCACTGGCCTGTCATTAGAAGAACGAGATCGCTATGCTGAAATTGTAGAGCGACTAGGTGGAGAAGTAGATAATCTGACTACGTTAAGCGAGAAAACTACACATCTAATTGTCACGAAGCGAAAAATGCCTTATCTGTCTCGCTTCTGGCAAGTGGATGTTGCACAAATCCTACTTAGACGCATGCTCACGGGAATCCTGTTGGGTTGATGAAGCAGGATATGAGTGGGGTG] [+] EMBL CD147341 [ACAACTAGCACTGATCTTGTAATTTCAAAAGCAAACTGCGAAAAGAATCAGTCTGAAAATAAAATTGAACAGACATTATTAAGAGAGAATATTACACAAAAATCAGATAATCAATCATCGTTCAAATCACCGATACAAAAACAACAACAGCCACAACAACCTGATTGCCTATCACCTAAACGAAACTATATAATCTCTTTCACTGGCCTGTCATTAGAAGAACGAGATCGCTATGCTGAAATTGTAGAGCGACTAGGTGGAGAAGTAGATAATCTGACTACGTTAAGCGAGAAAACTACACATCTAATTGTCACGAAGCGAAAAATGCCTTATCTGTCTCGCTTCTGGCAAGTGGATGTTGCACAAATCCTACTTAGACGCATGCTCACGGGAATCCTGTTGGGTTGATGAAGCAGGATATGAGTGGGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8869#0 -----------------------CAACTAGCACTGATCTTGTAATTTCAAAAGCAAACTG 37 consensus_8869#3 ----------------------ACAACTAGCACTGATCTTGTAATTTCAAAAGCAAACTG 38 consensus_8869#1 TTATTAAGACCGCAAACTCCTGGTACTAAAGGTGGACCGGATCCATGTAAAGATAGCATC 60 consensus_8869#2 ---------------------------------------------TGTAAAGATAGCATC 15 * *** * * consensus_8869#0 CGAAAAGAATCAGTCTGAAAATAAAATTGAACAGACATTATTAAGAGAGAATATTACACA 97 consensus_8869#3 CGAAAAGAATCAGTCTGAAAATAAAATTGAACAGACATTATTAAGAGAGAATATTACACA 98 consensus_8869#1 TG---GGATTCAGGTTGAGATCCTATAGAGTCATTCGACTTCAAACGCGAACTGTTTACG 117 consensus_8869#2 TG---GGATTCAGGTTGAGATCCTATAGAGTCATTCGACTTCAAACGCGAACTATTTACG 72 * ** **** *** * * ** * * ** * *** * ** consensus_8869#0 AAAATCAGATAATCAATCATCGTTCAAATCACCGATACAAAAACAACAACAGCCACAACA 157 consensus_8869#3 AAAATCAGATAATCAATCATCGTTCAAATCACCGATACAAAAACAACAACAGCCACAACA 158 consensus_8869#1 GATATGTCACTGCGTATTCCATTTCTAGGTTCCAGCTGAACAAAAATGACTTTTTCACGC 177 consensus_8869#2 GATATGTCACTGCGTATTCCATTTCTAGGTTCCAGCTGAACAAAAATGACTTTTTCACGC 132 * ** * ** *** * ** ** ** ** ** ** consensus_8869#0 ACCTGATT-GCCTATCACCTAAACGAAACTATATAATCTCTTTCACTGGCCTGTCATTAG 216 consensus_8869#3 ACCTGATT-GCCTATCACCTAAACGAAACTATATAATCTCTTTCACTGGCCTGTCATTAG 217 consensus_8869#1 TCCAGATTAGCTTCTTCTATGGTAGCATCTTCATCTTCCAGTTCTTCAAATTCGTTTTGT 237 consensus_8869#2 TCCAGATTAGCTTCTTCTATGGTAGCATCTTCATCTTCCAGTTCTTCAAATTCGTTTTGT 192 ** **** ** * * * * * ** ** ** *** * ** consensus_8869#0 AAGAACGAGATCGCTATGCTGAAATTGTAG--AGCGACTAGGTGGAGAAGTAGATAATCT 274 consensus_8869#3 AAGAACGAGATCGCTATGCTGAAATTGTAG--AGCGACTAGGTGGAGAAGTAGATAATCT 275 consensus_8869#1 TCATTGTGTATTGATAAGTGGACATTCACGCCAGGTGCTGCTTTAAGGTGTTGTGCGACT 297 consensus_8869#2 TCATTGTGTATTGATAAGTGGACATTCACGCCAGGTGCTGCTTTAAGGTGTTGTGCGACT 252 ** * ** * ** *** * ** ** * ** ** * ** consensus_8869#0 GACTACGTTAAGCGAGAAAACTACACATCTAATTGTGTATGCACCAACACGAAGCGAAAA 334 consensus_8869#3 GACTACGTTAAGCGAGAAAACTACACATCTAATTGT-----------CACGAAGCGAAAA 324 consensus_8869#1 -ATCGCTTTAAGTTCTCTTATTGTCTG--AAATTTGCAATATGTCCCTTCAAACAGCAAA 354 consensus_8869#2 -ATCGCTTTAAGTTCTCTTATTGTCTG--AAATTTGCAATATGTCCCTTCAAACAGCAAA 309 * * ***** * * **** * ** * *** consensus_8869#0 ATGCCTTATCTGTCTC---GCTTCTGGCA-AGTGGATGTTGCACAAATCCTACTTAGACG 390 consensus_8869#3 ATGCCTTATCTGTCTC---GCTTCTGGCA-AGTGGATGTTGCACAAATCCTACTTAGACG 380 consensus_8869#1 GTGGCACTTGAGTTTGAAGGATTTAGGTAGAATGAGTAGTGGGGTGGATATATTTCGATT 414 consensus_8869#2 GTGGCACTTGAGTTTGAAGGATTTAGGTAGAATGAGTAGTGGGGTGGTCCTGGTAC--TG 367 ** * * ** * * ** ** * * ** * ** * * consensus_8869#0 CATGCTCACGGGAATCCTGTTGGGTTGATGAAGCAGCATATGAGTGGGGTGGTCCTGGTA 450 consensus_8869#3 CATGCTCACGGGAATCCTGTTGGGTTGATGAAGCAGGATATGAGTGGGGTG--------- 431 consensus_8869#1 TCCGCTGACTTTGGT---GCTTGGATGGCACGCCGTTCGAAAACAGAAATGTCTGTATGT 471 consensus_8869#2 AGCCCTTATTGATGC---AGTTAAGTC-CGTTTCCTTGTCCACCCGGTGGTCCTACATTA 423 ** * * * * * consensus_8869#0 CTGAGCCCTTATTGATGCAGTTAAGTCCGTTTCCTTGCCCACCCGGTGGTCCTACATTAT 510 consensus_8869#3 ------------------------------------------------------------ consensus_8869#1 GTACAACCATAAAAATCAACAAA---CAGCTTCCACACATTCCTAGGTATTAACGT-GAT 527 consensus_8869#2 TCACATCAACAGAAAGCTGCT-----CAGATTAGAGATCTAGCTAGATCTGCACGTCGTT 478 consensus_8869#0 CACATCAACAGAAAGCTGCTCAGATTAGAGATCTAGCTAGATCTGCACGTCGTTGGCGGT 570 consensus_8869#3 ------------------------------------------------------------ consensus_8869#1 GTCACTTTCCAAGAGCAAGTTTTCTTTTAATTTTCCATCATATAAAATGTCACTGTTATC 587 consensus_8869#2 GGCGGTTGTCTGGAGGCAN---------AGCATTTCATAAT-TAGAAGGTTATTTTTG-- 526 consensus_8869#0 TGTCTGGAGGCAAAGCATTTCATAATTGGAAGGTTATTTTTGGACCGGGTTGTGATAAAG 630 consensus_8869#3 ------------------------------------------------------------ consensus_8869#1 AACTTTTCCTGGATACTCTTCAGAGGTTTCGTC-CACTATTCCACTTTTGGAAACCGAGT 646 consensus_8869#2 GACCTGGTTGTGATAAAGAAAGTAGTTTTAGACGTATTATCGAAGCTGGTGGAGGAAAGT 586 consensus_8869#0 AAAGTAGTTTTAGACGTATATTCGAAGCTGGTGGAGGAAAAGTATTATCAAGCAGTCCAC 690 consensus_8869#3 ------------------------------------------------------------ consensus_8869#1 -CCACAAATTCTTCCCATTTCGTCCACCAGTTAAGAGACAGGATATACCATAAGCCTNCT 705 consensus_8869#2 ATTATCAAGCA------------------------------------------------- 597 consensus_8869#0 CCTATCCTCCTGCTCATGAAGTTACTCATGCATTTGTTAAAATAAATAATAATTCTGCCA 750 consensus_8869#3 ------------------------------------------------------------ consensus_8869#1 TTTGTTATCTC------------------------------------------------- 716 consensus_8869#2 ------------------------------------------------------------ consensus_8869#0 TCATACCGTCCACTTTACCGCGTAACTACTCATGGCTGCGCATAGATTATCTTTGTTCCT 810 consensus_8869#3 ------------------------------------------------------------ consensus_8869#1 ------------------------------------------------------------ consensus_8869#2 ------------------------------------------------------------ consensus_8869#0 ATTTAAGTTCTGGTGAAAGAAATCTCAAAATCAGAATTCACTCTTTAATCCATCCAGTTT 870 consensus_8869#3 ------------------------------------------------------------ consensus_8869#1 ------------------------------------------------------------ consensus_8869#2 ------------------------------------------------------------ consensus_8869#0 TACAGCTATTCCAATGTATCAATTCCTGATGGAGATTAATCTGATCAATCAATAAAACAA 930 consensus_8869#3 ------------------------------------------------------------ consensus_8869#1 ------------------------------------------------------------ consensus_8869#2 ------------------------------------------------------------ consensus_8869#0 TCAACA 936 consensus_8869#3 ------ consensus_8869#1 ------ consensus_8869#2 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||