These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8878#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 850 fasta sequence [AATTTTTACCTTGATAACAATAATAGCAATAACAATATAAAACATAATGAGATTACTGCAAATCACAAATTAGCCTTGGAGGACTCACAACAGAATAACATTGGATATTTATCATCTAAACTTATGAAAAGTAATGCCAAGAGACCATCGAAATTATCCAATGCAACGAATACTTCAGAATTGACTCCTGTTGATTGTTCACCTACATCATCTCATTCTGGGAATGATTTTCTCCTAGAATCCAATATTACAAGAAACCACGTCGAACATACCGACCACTGTCATGATGATAATAATAATGATGATCATAATGCTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAGTTCTTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCACTGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAATTTAAATCAACCATCAACATCTTCAAGTTCTTCATTTCAATCTCAATCCTCCTATTGTCATCTTTTTATGTATCAATCTATTGGAACATTAATTTTAGCTTGTTCATCACCATTCGGTGTTCTTGTTGGTTGTGGTTTAATGCAACAAAAACAATCAGCAGTATTAACAATGTCAACTGCTGTACTTCAAGGTTTAGCTTGTGGAACATTTTTCTTCGTCGTATTCTGTGAATTATTACCAGTTGAATTTAAAGAAAGTGTCAAAGATAGGATGGGAAAAATTTTTTTCTTATTACTTGGATTTGCAGTAGTTG] [+] EMBL CD118562 [AATTTTTACCTTGATAACAATAATAGCAATAACAATATAAAACATAATGAGATTACTGCAAATCACAAATTAGCCTTGGAGGACTCACAACAGAATAACATTGGATATTTATCATCTAAACTTATGAAAAGTAATGCCAAGAGACCATCGAAATTATCCAATGCAACGAATACTTCAGAATTGACTCCTGTTGATTGTTCACCTACATCATCTCATTCTGGGAATGATTTTCTCCTAGAATCCAATATTACAAGAAACCACGTCGAACATACCGACCACTGTCATGATGATAATAATAATGATGATCATAATGCTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAGTTCTTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAAC ] [-] EMBL CD095809 [ AATAACATTGGATATTTATCATCTAAACTTATGAAAAGTAATGCCAAGAGACCATCGAAATTATCCGATGCAACGAATACTTCAGAATTGACTCCTGTTGATTGTTCACTTACATCATCTCATTCTGGGAATGATTTTCTCCTAGAATCCAATATTACAAGAAACCACGTCGAACATACCGACCACTGTCATGATGATAATAATAATGATGATCATAATGCTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAGTTCCTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCACTGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAATTTAAATCAACCATCAACATCTTCAAGTTCTTCATTT ] [+] EMBL AW017309 [ CTCATTCTGGGAATGATTTTCTCCTAGAATCCAATATTACAAGAAACCACGTCGAACATACCGACCACTGTCATGATGATAATAATAATGATGATCATAATGCTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAGTTCTTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCACTGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAATTTAAATCAACCATCAACATCTTCAAGTTCTTCATTTCAATCTCAATCCTCCTATTGTCATCTTTTTATGTATCAATCTATTGGAACATTAATTTTAGCTTGTTCATCACCATTCGGTGTTCTTGTTGGTTGTGGTTTAATGCAACAAAAACAATCAGCAGTATTAACAATGTCAACTGCTGTACTTCAAGGTTTAGCTTGTGGAACATTTTTCTTCGTCGTATTCTGTGAATTATTACCAGTTGAATTTAAAGAAAGTGTCAAAGATAGGATGGGAAAAATTTTTTTCTTATTACTTGGATTTGCAGTAGTTG] [-] EMBL CD096059 [ TGATAATAATAATGATGATCATAATGTTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAGTTCTTTTGGATCAGTGTTGCGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCACTGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAATTTAAATCAACCATCAACATCTTCAAGTTCTTCATTT ] consensusID : consensus_8878#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 480 fasta sequence [AATAACATTGGATATTTATCATCTAAACTTATGAAAAGTAATGCCAAGAGACATGATACATCAATTCAATGNCGGAGACTCACAACTAGACGTTGCNCCGTGAGATCCACCTAGTCCTTATGCTTCAATAGAGTATTTCTTATATCACAAACTATCAAAAAGACACCGTGGACATANNCGCCCTTTTTTCNTNNTNATTATANNAAAAATGATCANAANAGTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAGTTCTTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCACTGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAATTTAAATCAACCATCAACATCTTCAAGTTCTTCATTT] [-] EMBL CD096061 [AATAACATTGGATATTTATCATCTAAACTTATGAAAAGTAATGCCAAGAGACATGATACATCAATTCAATGNCGGAGACTCACAACTAGACGTTGCNCCGTGAGATCCACCTAGTCCTTATGCTTCAATAGAGTATTTCTTATATCACAAACTATCAAAAAGACACCGTGGACATANNCGCCCTTTTTTCNTNNTNATTATANNAAAAATGATCANAANAGTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAGTTCTTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCACTGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAATTTAAATCAACCATCAACATCTTCAAGTTCTTCATTT] [+] EMBL CD152768 [ TTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCACTGCTATTTTATTACATAAAATAATCA ] [-] EMBL CD149610 [ gTGGCCTTCAACCTACAACACAAAGTACTCTTGCTTTATTCAATGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAATTTATATCAACCATTCACCTCCTCAAGGTTTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8878#0 AATTTTTACCTTGATAACAATAATAGCAATAACAATATAAAACATAATGAGATTACTGCA 60 consensus_8878#1 ------------------------------------------------------------ consensus_8878#0 AATCACAAATTAGCCTTGGAGGACTCACAACAGAATAACATTGGATATTTATCATCTAAA 120 consensus_8878#1 ---------------------------------AATAACATTGGATATTTATCATCTAAA 27 *************************** consensus_8878#0 CTTATGAAAAGTAATGCCAAGAGACCATCGAAATTA-TCCAATGCAACGAATACTTCAGA 179 consensus_8878#1 CTTATGAAAAGTAATGCCAAGAGACATGATACATCAATTCAATG--NCGGAGACT-CACA 84 ************************* * ** * * ***** ** * *** ** * consensus_8878#0 ATTGACTCCTGTTGATTGTTCACCTACATCATC-TCATTCTGGGAATGATTTTCTCCTAG 238 consensus_8878#1 ACTAGACGTTGCNCCGTGAG-ATCCACCTAGTCCTTATGCTTCAATAGAGTATTTCTTAT 143 * * ** ** * * ** * ** * ** ** * ** * * ** ** consensus_8878#0 AATCCAATATTACAAGAAACCACGTCGAACATACCGACCACTGT--CATGATGATAATAA 296 consensus_8878#1 ATCACAAACTATCAAAAAGACACCGTGGACATANNCGCCCTTTTTTCNTNNTNATTATAN 203 * *** * *** ** *** * ***** ** * * * * * ** *** consensus_8878#0 TAATGATGATCATAATGCTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAG 356 consensus_8878#1 NAAAAATGATCANAANAGTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAG 263 ** ******* ** ****************************************** consensus_8878#0 TTCTTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAAT 416 consensus_8878#1 TTCTTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAAT 323 ************************************************************ consensus_8878#0 ATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCAC 476 consensus_8878#1 ATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCAC 383 ************************************************************ consensus_8878#0 TGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAA 536 consensus_8878#1 TGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAA 443 ************************************************************ consensus_8878#0 TTTAAATCAACCATCAACATCTTCAAGTTCTTCATTTCAATCTCAATCCTCCTATTGTCA 596 consensus_8878#1 TTTAAATCAACCATCAACATCTTCAAGTTCTTCATTT----------------------- 480 ************************************* consensus_8878#0 TCTTTTTATGTATCAATCTATTGGAACATTAATTTTAGCTTGTTCATCACCATTCGGTGT 656 consensus_8878#1 ------------------------------------------------------------ consensus_8878#0 TCTTGTTGGTTGTGGTTTAATGCAACAAAAACAATCAGCAGTATTAACAATGTCAACTGC 716 consensus_8878#1 ------------------------------------------------------------ consensus_8878#0 TGTACTTCAAGGTTTAGCTTGTGGAACATTTTTCTTCGTCGTATTCTGTGAATTATTACC 776 consensus_8878#1 ------------------------------------------------------------ consensus_8878#0 AGTTGAATTTAAAGAAAGTGTCAAAGATAGGATGGGAAAAATTTTTTTCTTATTACTTGG 836 consensus_8878#1 ------------------------------------------------------------ consensus_8878#0 ATTTGCAGTAGTTG 850 consensus_8878#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||