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Schistosoma mansoni
cluster # 8878 cluster # 8878       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8878#0 length = 850 sequences # 4  
consensus_8878#1 length = 480 sequences # 3  

consensusID : consensus_8878#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 850
fasta sequence
                              [AATTTTTACCTTGATAACAATAATAGCAATAACAATATAAAACATAATGAGATTACTGCAAATCACAAATTAGCCTTGGAGGACTCACAACAGAATAACATTGGATATTTATCATCTAAACTTATGAAAAGTAATGCCAAGAGACCATCGAAATTATCCAATGCAACGAATACTTCAGAATTGACTCCTGTTGATTGTTCACCTACATCATCTCATTCTGGGAATGATTTTCTCCTAGAATCCAATATTACAAGAAACCACGTCGAACATACCGACCACTGTCATGATGATAATAATAATGATGATCATAATGCTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAGTTCTTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCACTGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAATTTAAATCAACCATCAACATCTTCAAGTTCTTCATTTCAATCTCAATCCTCCTATTGTCATCTTTTTATGTATCAATCTATTGGAACATTAATTTTAGCTTGTTCATCACCATTCGGTGTTCTTGTTGGTTGTGGTTTAATGCAACAAAAACAATCAGCAGTATTAACAATGTCAACTGCTGTACTTCAAGGTTTAGCTTGTGGAACATTTTTCTTCGTCGTATTCTGTGAATTATTACCAGTTGAATTTAAAGAAAGTGTCAAAGATAGGATGGGAAAAATTTTTTTCTTATTACTTGGATTTGCAGTAGTTG]

[+] EMBL CD118562             [AATTTTTACCTTGATAACAATAATAGCAATAACAATATAAAACATAATGAGATTACTGCAAATCACAAATTAGCCTTGGAGGACTCACAACAGAATAACATTGGATATTTATCATCTAAACTTATGAAAAGTAATGCCAAGAGACCATCGAAATTATCCAATGCAACGAATACTTCAGAATTGACTCCTGTTGATTGTTCACCTACATCATCTCATTCTGGGAATGATTTTCTCCTAGAATCCAATATTACAAGAAACCACGTCGAACATACCGACCACTGTCATGATGATAATAATAATGATGATCATAATGCTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAGTTCTTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAAC                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD095809             [                                                                                             AATAACATTGGATATTTATCATCTAAACTTATGAAAAGTAATGCCAAGAGACCATCGAAATTATCCGATGCAACGAATACTTCAGAATTGACTCCTGTTGATTGTTCACTTACATCATCTCATTCTGGGAATGATTTTCTCCTAGAATCCAATATTACAAGAAACCACGTCGAACATACCGACCACTGTCATGATGATAATAATAATGATGATCATAATGCTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAGTTCCTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCACTGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAATTTAAATCAACCATCAACATCTTCAAGTTCTTCATTT                                                                                                                                                                                                                                                                                     ]
[+] EMBL AW017309             [                                                                                                                                                                                                                   CTCATTCTGGGAATGATTTTCTCCTAGAATCCAATATTACAAGAAACCACGTCGAACATACCGACCACTGTCATGATGATAATAATAATGATGATCATAATGCTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAGTTCTTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCACTGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAATTTAAATCAACCATCAACATCTTCAAGTTCTTCATTTCAATCTCAATCCTCCTATTGTCATCTTTTTATGTATCAATCTATTGGAACATTAATTTTAGCTTGTTCATCACCATTCGGTGTTCTTGTTGGTTGTGGTTTAATGCAACAAAAACAATCAGCAGTATTAACAATGTCAACTGCTGTACTTCAAGGTTTAGCTTGTGGAACATTTTTCTTCGTCGTATTCTGTGAATTATTACCAGTTGAATTTAAAGAAAGTGTCAAAGATAGGATGGGAAAAATTTTTTTCTTATTACTTGGATTTGCAGTAGTTG]
[-] EMBL CD096059             [                                                                                                                                                                                                                                                                                               TGATAATAATAATGATGATCATAATGTTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAGTTCTTTTGGATCAGTGTTGCGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCACTGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAATTTAAATCAACCATCAACATCTTCAAGTTCTTCATTT                                                                                                                                                                                                                                                                                     ]


>consensus_8878#0 AATTTTTACCTTGATAACAATAATAGCAATAACAATATAAAACATAATGAGATTACTGCA AATCACAAATTAGCCTTGGAGGACTCACAACAGAATAACATTGGATATTTATCATCTAAA CTTATGAAAAGTAATGCCAAGAGACCATCGAAATTATCCAATGCAACGAATACTTCAGAA TTGACTCCTGTTGATTGTTCACCTACATCATCTCATTCTGGGAATGATTTTCTCCTAGAA TCCAATATTACAAGAAACCACGTCGAACATACCGACCACTGTCATGATGATAATAATAAT GATGATCATAATGCTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAGTTCT TTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTT GAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCACTGCT ATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAATTTA AATCAACCATCAACATCTTCAAGTTCTTCATTTCAATCTCAATCCTCCTATTGTCATCTT TTTATGTATCAATCTATTGGAACATTAATTTTAGCTTGTTCATCACCATTCGGTGTTCTT GTTGGTTGTGGTTTAATGCAACAAAAACAATCAGCAGTATTAACAATGTCAACTGCTGTA CTTCAAGGTTTAGCTTGTGGAACATTTTTCTTCGTCGTATTCTGTGAATTATTACCAGTT GAATTTAAAGAAAGTGTCAAAGATAGGATGGGAAAAATTTTTTTCTTATTACTTGGATTT GCAGTAGTTG



consensusID : consensus_8878#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 480
fasta sequence
                              [AATAACATTGGATATTTATCATCTAAACTTATGAAAAGTAATGCCAAGAGACATGATACATCAATTCAATGNCGGAGACTCACAACTAGACGTTGCNCCGTGAGATCCACCTAGTCCTTATGCTTCAATAGAGTATTTCTTATATCACAAACTATCAAAAAGACACCGTGGACATANNCGCCCTTTTTTCNTNNTNATTATANNAAAAATGATCANAANAGTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAGTTCTTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCACTGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAATTTAAATCAACCATCAACATCTTCAAGTTCTTCATTT]

[-] EMBL CD096061             [AATAACATTGGATATTTATCATCTAAACTTATGAAAAGTAATGCCAAGAGACATGATACATCAATTCAATGNCGGAGACTCACAACTAGACGTTGCNCCGTGAGATCCACCTAGTCCTTATGCTTCAATAGAGTATTTCTTATATCACAAACTATCAAAAAGACACCGTGGACATANNCGCCCTTTTTTCNTNNTNATTATANNAAAAATGATCANAANAGTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAGTTCTTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCACTGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAATTTAAATCAACCATCAACATCTTCAAGTTCTTCATTT]
[+] EMBL CD152768             [                                                                                                                                                                                                                                                                                       TTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCACTGCTATTTTATTACATAAAATAATCA                                                                       ]
[-] EMBL CD149610             [                                                                                                                                                                                                                                                                                                                                                    gTGGCCTTCAACCTACAACACAAAGTACTCTTGCTTTATTCAATGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAATTTATATCAACCATTCACCTCCTCAAGGTTTT     ]


>consensus_8878#1 AATAACATTGGATATTTATCATCTAAACTTATGAAAAGTAATGCCAAGAGACATGATACA TCAATTCAATGNCGGAGACTCACAACTAGACGTTGCNCCGTGAGATCCACCTAGTCCTTA TGCTTCAATAGAGTATTTCTTATATCACAAACTATCAAAAAGACACCGTGGACATANNCG CCCTTTTTTCNTNNTNATTATANNAAAAATGATCANAANAGTCATCATCATTCTCATACT CATGATATCAAATTTGATGCTAGTTCTTTTGGATCAGTGTTACGTATTATTCTACTTTTA TGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACA CAACGTACTCTTGCTTTATTCACTGCTATTTTATTACATAAAATTATCATAGCTATTGGT ATCGGTGTAAATTTAGCTACAAATTTAAATCAACCATCAACATCTTCAAGTTCTTCATTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8878#0      AATTTTTACCTTGATAACAATAATAGCAATAACAATATAAAACATAATGAGATTACTGCA 60
consensus_8878#1      ------------------------------------------------------------
                                                                                  

consensus_8878#0      AATCACAAATTAGCCTTGGAGGACTCACAACAGAATAACATTGGATATTTATCATCTAAA 120
consensus_8878#1      ---------------------------------AATAACATTGGATATTTATCATCTAAA 27
                                                       ***************************

consensus_8878#0      CTTATGAAAAGTAATGCCAAGAGACCATCGAAATTA-TCCAATGCAACGAATACTTCAGA 179
consensus_8878#1      CTTATGAAAAGTAATGCCAAGAGACATGATACATCAATTCAATG--NCGGAGACT-CACA 84
                      *************************     * ** * * *****   ** * *** ** *

consensus_8878#0      ATTGACTCCTGTTGATTGTTCACCTACATCATC-TCATTCTGGGAATGATTTTCTCCTAG 238
consensus_8878#1      ACTAGACGTTGCNCCGTGAG-ATCCACCTAGTCCTTATGCTTCAATAGAGTATTTCTTAT 143
                      * *      **     **   * * ** *  ** * ** **   *  ** * * ** ** 

consensus_8878#0      AATCCAATATTACAAGAAACCACGTCGAACATACCGACCACTGT--CATGATGATAATAA 296
consensus_8878#1      ATCACAAACTATCAAAAAGACACCGTGGACATANNCGCCCTTTTTTCNTNNTNATTATAN 203
                      *   ***  *  *** **  ***   * *****    **  * *  * *  * ** *** 

consensus_8878#0      TAATGATGATCATAATGCTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAG 356
consensus_8878#1      NAAAAATGATCANAANAGTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAG 263
                       **  ******* **   ******************************************

consensus_8878#0      TTCTTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAAT 416
consensus_8878#1      TTCTTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAAT 323
                      ************************************************************

consensus_8878#0      ATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCAC 476
consensus_8878#1      ATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCAC 383
                      ************************************************************

consensus_8878#0      TGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAA 536
consensus_8878#1      TGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAA 443
                      ************************************************************

consensus_8878#0      TTTAAATCAACCATCAACATCTTCAAGTTCTTCATTTCAATCTCAATCCTCCTATTGTCA 596
consensus_8878#1      TTTAAATCAACCATCAACATCTTCAAGTTCTTCATTT----------------------- 480
                      *************************************                       

consensus_8878#0      TCTTTTTATGTATCAATCTATTGGAACATTAATTTTAGCTTGTTCATCACCATTCGGTGT 656
consensus_8878#1      ------------------------------------------------------------
                                                                                  

consensus_8878#0      TCTTGTTGGTTGTGGTTTAATGCAACAAAAACAATCAGCAGTATTAACAATGTCAACTGC 716
consensus_8878#1      ------------------------------------------------------------
                                                                                  

consensus_8878#0      TGTACTTCAAGGTTTAGCTTGTGGAACATTTTTCTTCGTCGTATTCTGTGAATTATTACC 776
consensus_8878#1      ------------------------------------------------------------
                                                                                  

consensus_8878#0      AGTTGAATTTAAAGAAAGTGTCAAAGATAGGATGGGAAAAATTTTTTTCTTATTACTTGG 836
consensus_8878#1      ------------------------------------------------------------
                                                                                  

consensus_8878#0      ATTTGCAGTAGTTG 850
consensus_8878#1      --------------
                                    




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)