These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8891#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 953 fasta sequence [ATTATTTCAAATGATATAAAACTTGGTACAACATCATCGATGATAAATTCACCAACACAGCATCATACGTTACATGATATGTTTAACAATGCTTCTGTTATTCTTGTCACTGGTCCTAATATGGGTGGAAAATCAACTTTAATGAGACAAGCTGCTTTATTAGTTATATTAGCCCATTTAGGTTGTCGTATTCCGGCCAAGTCATGCAAACTAACTCCTGTGGATCGGATATTTTCACGCCTTGGTGCTAGTGACAGAATGCTTTCAGGTGAAAGTACGTTTTTGGTGGAGTTATCAGAGACGGCATCTATTTTGCATCATATCACTCCTCATAGTCTTGTTTTGATGGATGAATTAGGTCGTGGAACTTCCACTCACGACGGATCAGCCCTAGCAGGTGCAGTTGTGTCTTACTTAGCTAAACCAAATGGAAGGTTTTTCAATGGCTCTGGCCCTAGAACTTTGTTTTCAACGCACTATCACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAATCACTTATGTATTGGCCTGGGTCACATGGCTTGTATGGTTGAAGCAGAATCA-GAGTCAACAAATGGTTTAGAAAATATCACATTTTTGTATAAATTTATTCCTGGTGCATGTCCGAAAAGCTATGGTTTCAATGCAGCTCGTTTAGCTATGCTACCTGATAAGGTTATCCGACTTGGTTTAGCTAAAGCA-AAGGAGTTCGAAAAAACCACTGCAACGTTTGCATGTGTGAGGAGATTATTGCACGGGCCGGCTACAGTGGATGATCTACGACACTGGAATCCTAAACTAATAGCATTATTATCACATANAAAACAATACGCTTANAGATCATATTCATCCAGCTCTTACACTACACATGCTAGATTTCATGATC-ATATATATCTACTTACTTCGTTCAAGGAACTACCCTAAAT] [+] EMBL CD083762 [ATTATTTCAAATGATATAAAACTTGGTACAACATCATCGATGATAAATTCACCAACACAGCATCATACGTTACATGATATGTTTAACAATGCTTCTGTTATTCTTGTCACTGGTCCTAATATGGGTGGAAAATCAACTTTAATGAGACAAGCTGCTTTATTAGTTATATTAGCCCATTTAGGTTGTCGTATTCCGGCCAAGTCATGCAAACTAACTCCTGTGGATCGGATATTTTCACGCCTTGGTGCTAGTGACAGAATGCTTTCAGGTGAAAGTACGTTTTTGGTGGAGTTATCAGAGACGGCATCTATTTTGCATCATATCACTCCTCATAGTCTTGTTTTGATGGATGAATTAGGTCGTGGAACTTCCACTCACGACGGATCAGCCCTAGCAGGTGCAGTTGTGTCTTACTTAGCTNAACCAAATGGAAGGTTTTTCAATGGCTCTGGCCCTAGAACTTTGTTTTCAACGCACTATCACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAATC ] [+] EMBL CD082869 [ CAAGCTGCTTTATTAGTTATATTAGCCCATTTAGGTTGTCGTATTCCGGCCAAGTCATGCAAACTAACTCCTGTGGATCGGATATTTTCACGCCTTGGTGCTAGTGACAGAATGCTTTCAGGTGAAAGTACGTTTTTGGTGGAGTTATCAGAGACGGCATCTATTTTGCATCATATCACTCCTCATAGTCTTGTTTTGATGGATGAATTAGGTCGTGGAACTTCCACTCACGACGGATCAGCCCTAGCAGGTGCAGTTGTGTCTTACTTAGCTAAACCAAATGGAAGGTTTTTCAATGGCTCTGGCCCTAGAACTTTGTTTTCAACGCACTATCACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAATCACTTATGTATTGGCCTGGGTCACATGGCTTGTATGGTTGAAGCAGAATCA GAGTCAACAAATGGTTTAGAAAATATCACATTTTTGTATAAATTTATTCCTGGTGCATGTCCGAAAAGCTATGGTTTCAATGCAGCTCGTTTAGCTATGCTACCTGATAAGGTTATCCGACTTGGTTTAGCTAAAGCANAGGGAGT ] [+] EMBL CD080627 [ ATTAACCCATTTAGGTTGTCGTATTCCGGCCAAGTCATGCAAACTAACTCCTGTGGATCGGCTATTTTCACGCCTTGGTGCTACTGACAGAATGCTTTCAGGTGAAAGTACGTTTTTGGTGGATTTATCAGAGACGGCATCTATTTTGCATCATATCACTCCTCATACTCTTGCTTTGATGGATGAATTAAGTCGTGGAACTTCCACTCACGACCGATCATCCCTAGCAAGGGCAGGTGCGTCTTACTTAGCTAAACCAAATGGACTGTTTTTCAATGGCTCTGGCCCTATAACTTTGTTTTCAGCGCACTATCACAGCTTGCTATATCATGCTGCTAACTAATACCGATCTACTTCCGATGAAGATATTAATCACTTATGTATTGGCCTGGGTCACATGGCTTGCATGGATGAAGCAGAATCAGGAGTCAACAAATGGTTTAGAAAATATCACATTTTTGCATAAATATATTCCTGCTGCATGTCCGAAAAGCTATGGGTCCAATGCCTCTCGTTTAGCTATGCTACCTGATAAGGTTATCCGACTTGGTTTAGCTAAAGCA AAGGAGTTCGAAAAAACCACTGCGACGTTAGCATGTGTGATGAGATTATTGCACGGGCCGGCTACAGTGGATGATCTACGACACTGGAATCCTAAACTAATAGCATTATTATCACATANAAAACAATACGCTTANAGATCATATTCATCCAGCTCTTACACTACACATGCTAGATTTCATGATC ATATATATCTACTTACTTCGTTCAAGGAACTACCCTAAAT] [-] EMBL CD076455 [ ATGGATGAATTAGGTCGTGGAACTTCCACTCACGACGGATCAGCCCTAGCAGGTGCAGTTGTGTCTTACTTAGCTAAACCAAATGGAAGGTTTTTCAATGGCTCTGGCCCTAGAACTTTGTTTTCAACGCACTATCACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAATCACTTATGTATTGGCCTGGGTCACATGGCTTGTATGGTTGAAGCAGAATCA GAGTCAACAAATGGTTTAGAAAATATCACATTTTTGTATAAATTTATTCCTGGTGCATGTCCGAAAAGCTATGGTTTCAATGCAGCTCGTTTAGCTATGCTACCTGATAAGGTTATCCGACTTGGTTTAGCTAAAGCA AAGGAGTTCGAAAAAACCACTGCAACGTTTGCATGTGTGAGGAGATTATTGCAAGGGCCGGTTACAGTGGAGGATCTACGACAATGGAATTTTAAATTAAAAGCATTTTTATAACATAAAAAACAATAC CTTAAAAATCATATTCATCCAGCTTTTAAACTACACATCCTAGATTTCATTATCAATATATATCTACTTACTTCTTTCtt ] [-] EMBL CD136225 [ CTAAACCAAATGGAA GTTTTTCAATGGCTCTGGCCCTAGAACTTTTTTTTCAACGCACTATCACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAATCACTTATGTATTGGCCTGGGTCACATGGCTTGTATGGTTGAAGCAGAATCA GAGTCAACAAATGGTTTAGAAAATATCACATTTTTGTATAAATTTATTCCTGGTGCATGTCCGAAAAGCTATGGTTTCAATGCAGCTCGTTTAGCTATGCTACCTGATAAGGTTATCCGACTTGGTTTAGCTAAAGCA AAGGAGTTCGAAAAAACCACTGCAACGTTTGCATGTGTGAGGAGAT ] consensusID : consensus_8891#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence [GTGGAGTTATCAGAGACGGCATCTATTNTGCATCATATCACTCCTCATAGTCTTGTTNTGATGGATGAATTAGGTCGTGGAACTTCCACTCACGACGGATCAGCCCTAGCAGGTGCAGTTGTGTCTTACTTAGCTAAACCAAATGGAAGGTTTTTCAATGGCTCTGGCCCTAGAACTTTGTTTTCAACGCACTATCACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAATCACTTATGTATTGGCCTGGGTCACATGGCTTGTATGGTTGAAGCAGAATCAGAGTCAACAAATGGTTTAGAAAATATCACATTTTTGTATAAATTTATTCCTGGTGCATGTCCGAAAAGCTATGGTTTCAATGCAGCTCGTTTAGCTATGCTACCTGATAAGGTTAGAGTTTCATGAGTAAACTATGTACTGTTTTGACAATGATTTATCTGTGTGCATCTTTTTTGTCTTTTTCTCTATTATCAATATCTTATTACGTTAATAGTGAATTTGAGTAGCCAATTTGATTACCGATATCACTATCCATAAACTGTTTGTTTATTTGAGACCAGACATTTTTTCATGGATTTCCACATAGTTTTTCTTCATAGT] [-] EMBL CD129877 [GTGGAGTTATCAGAGACGGCATCTATTNTGCATCATATCACTCCTCATAGTCTTGTTNTGATGGATGAATTAGGTCGTGGAACTTCCACTCACGACGGATCAGCCCTAGCAGGTGCAGTTGTGTCTTACTTAGCTAAACCAAATGGAAGGTTTTTCAATGGCTCTGGCCCTAGAACTTTGTTTTCAACGCACTATCACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAATCACTTATGTATTGGCCTGGGTCACATGGCTTGTATGGTTGAAGCAGAATCAGAGTCAACAAATGGTTTAGAAAATATCACATTTTTGTATAAATTTATTCCTGGTGCATGTCCGAAAAGCTATGGTTTCAATGCAGCTCGTTTAGCTATGCTACCTGATAAGGTTAGAGTTTCATGAGTAAACTATGTACTGTTTTGACAATGATTTATCTGTGTGCATCTTTTTTGTCTTTTTCTCTATTATCAATATCTTATTACGTTAATAGTGAATTTGAGTAGCCAATTTGATTACCGATATCACTATCCATAAACTGTTTGTTTATTTGAGACCAGACATTTTTTCATGGATTTCCACATAGTTTTTCTTCATAGT] consensusID : consensus_8891#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [AGGTAGGTATTGGAAGGTTTTTAATGGCTCTGGCCCTAGAACTTTGTTTTCAACGCACTATCACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAATCACTTATGTATTGGCCTGGGTCACATGGCTTGTATGGTTGAAGCAGAATCAGAGTCAACAAATGGTTTAGAAAATATCACATTTTTGTATAAATTTATTCCTGGTGCATGTCCGAAAAGCTATGGTTTCAATGCAGCTCGTTTAGCTATGCTACCTGATAAGGTTATCCGACTTGGTTTAGCTAAAGCAAAGGAGTTCGAAAAAACCACTGCAACGTTTGCATGTGTGAGGAGATTATTGCAAGGGCCGGTTACAGTGGAGGATCTACGACAATGGAATTCTAAATTAAAAGCATTTTTATAACATAAAAAACAATACCTTAAAAATCATATTCATCCAGCTTTTAAACTACACATCCTAGATTTCATTATCAATATATATCTACTTACTTCTTTCTTTCCCTCATTAAATAGTTCATGTTCTTTTTACTTAAGGAAACTGAATTACTTACACACCTAGTGGTTCGAATACATTATAGTAGGAGGAAAATGATCTG] [+] EMBL CD065384 [AGGTAGGTATTGGAAGGTTTTTAATGGCTCTGGCCCTAGAACTTTGTTTTCAACGCACTATCACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAATCACTTATGTATTGGCCTGGGTCACATGGCTTGTATGGTTGAAGCAGAATCAGAGTCAACAAATGGTTTAGAAAATATCACATTTTTGTATAAATTTATTCCTGGTGCATGTCCGAAAAGCTATGGTTTCAATGCAGCTCGTTTAGCTATGCTACCTGATAAGGTTATCCGACTTGGTTTAGCTAAAGCAAAGGAGTTCGAAAAAACCACTGCAACGTTTGCATGTGTGAGGAGATTATTGCAAGGGCCGGTTACAGTGGAGGATCTACGACAATGGAATTCTAAATTAAAAGCATTTTTATAACATAAAAAACAATACCTTAAAAATCATATTCATCCAGCTTTTAAACTACACATCCTAGATTTCATTATCAATATATATCTACTTACTTCTTTCTTTCCCTCATTAAATAGTTCATGTTCTTTTTACTTAAGGAAACTGAATTACTTACACACCTAGTGGTTCGAATACATTATAGTAGGAGGAAAATGATCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8891#0 ATTATTTCAAATGATATAAAACTTGGTACAACATCATCGATGATAAATTCACCAACACAG 60 consensus_8891#2 ------------------------------------------------------------ consensus_8891#1 ------------------------------------------------------------ consensus_8891#0 CATCATACGTTACATGATATGTTTAACAATGCTTCTGTTATTCTTGTCACTGGTCCTAAT 120 consensus_8891#2 ------------------------------------------------------------ consensus_8891#1 ------------------------------------------------------------ consensus_8891#0 ATGGGTGGAAAATCAACTTTAATGAGACAAGCTGCTTTATTAGTTATATTAGCCCATTTA 180 consensus_8891#2 ------------------------------------------------------------ consensus_8891#1 ------------------------------------------------------------ consensus_8891#0 GGTTGTCGTATTCCGGCCAAGTCATGCAAACTAACTCCTGTGGATCGGATATTTTCACGC 240 consensus_8891#2 ------------------------------------------------------------ consensus_8891#1 ------------------------------------------------------------ consensus_8891#0 CTTGGTGCTAGTGACAGAATGCTTTCAGGTGAAAGTACGTTTTTGGTGGAGTTATCAGAG 300 consensus_8891#2 ------------------------------------------------------------ consensus_8891#1 ---------------------------------------------GTGGAGTTATCAGAG 15 consensus_8891#0 ACGGCATCTATTTTGCATCATATCACTCCTCATAGTCTTGTTTTGATGGATGAATTAGGT 360 consensus_8891#2 ------------------------------------------------------------ consensus_8891#1 ACGGCATCTATTNTGCATCATATCACTCCTCATAGTCTTGTTNTGATGGATGAATTAGGT 75 consensus_8891#0 CGTGGAACTTCCACTCACGACGGATCAGCCCTAGCAGGTGCAGTTGTGTCTTACTTAGCT 420 consensus_8891#2 --------------------------------------------------------AGGT 4 consensus_8891#1 CGTGGAACTTCCACTCACGACGGATCAGCCCTAGCAGGTGCAGTTGTGTCTTACTTAGCT 135 ** * consensus_8891#0 AAACCAAATGGAAGGTTTTTCAATGGCTCTGGCCCTAGAACTTTGTTTTCAACGCACTAT 480 consensus_8891#2 AGGT--ATTGGAAGGTTTTT-AATGGCTCTGGCCCTAGAACTTTGTTTTCAACGCACTAT 61 consensus_8891#1 AAACCAAATGGAAGGTTTTTCAATGGCTCTGGCCCTAGAACTTTGTTTTCAACGCACTAT 195 * * ************ *************************************** consensus_8891#0 CACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAAT 540 consensus_8891#2 CACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAAT 121 consensus_8891#1 CACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAAT 255 ************************************************************ consensus_8891#0 CACTTATGTATTGGCCTGGGTCACATGGCTTGTATGGTTGAAGCAGAATCAGAGTCAACA 600 consensus_8891#2 CACTTATGTATTGGCCTGGGTCACATGGCTTGTATGGTTGAAGCAGAATCAGAGTCAACA 181 consensus_8891#1 CACTTATGTATTGGCCTGGGTCACATGGCTTGTATGGTTGAAGCAGAATCAGAGTCAACA 315 ************************************************************ consensus_8891#0 AATGGTTTAGAAAATATCACATTTTTGTATAAATTTATTCCTGGTGCATGTCCGAAAAGC 660 consensus_8891#2 AATGGTTTAGAAAATATCACATTTTTGTATAAATTTATTCCTGGTGCATGTCCGAAAAGC 241 consensus_8891#1 AATGGTTTAGAAAATATCACATTTTTGTATAAATTTATTCCTGGTGCATGTCCGAAAAGC 375 ************************************************************ consensus_8891#0 TATGGTTTCAATGCAGCTCGTTTAGCTATGCTACCTGATAAGGTTATCCGACTTGGTTTA 720 consensus_8891#2 TATGGTTTCAATGCAGCTCGTTTAGCTATGCTACCTGATAAGGTTATCCGACTTGGTTTA 301 consensus_8891#1 TATGGTTTCAATGCAGCTCGTTTAGCTATGCTACCTGATAAGGTTA---GAGTTTCATGA 432 ********************************************** ** ** * * consensus_8891#0 GCTAAAGCAAAGGAGTTCGAAAAAACCACTGCAACGTTTGCATGTGTGAGGAGATTATTG 780 consensus_8891#2 GCTAAAGCAAAGGAGTTCGAAAAAACCACTGCAACGTTTGCATGTGTGAGGAGATTATTG 361 consensus_8891#1 G-TAAACTATGTACTGTTTTGACAATGATTTATCTGTGTGCATCTTTTTTGTCTTTTTCT 491 * **** * * * ** * * ** ***** * * * ** * consensus_8891#0 CACGGGCCGGCTACAGTGGATGATCTACGACACTGGAATCCTAAACTAATAGCATTATTA 840 consensus_8891#2 CAAGGGCCGGTTACAGTGGAGGATCTACGACAATGGAATTCTAAATTAAAAGCATTTTTA 421 consensus_8891#1 CTATTATCAA-TATCTTA------TTACGTTAATAGTGAATTTGAGTAGC--CAATTTGA 542 * * ** * **** * * * * * ** ** * * * consensus_8891#0 TCACATANAAAACAATACGCTTANAGATCATATTCATCCAGCTCTTACACTACACATGCT 900 consensus_8891#2 TAACATAAAAAACAATAC-CTTAAAAATCATATTCATCCAGCTTTTAAACTACACATCCT 480 consensus_8891#1 TTACCGATATCACTATCC----ATAAAC--TGTTTGTTTA--TTTGAGACCAGACATTTT 594 * ** * * ** ** * * * * * ** * * * * * ** * **** * consensus_8891#0 AGATTTCATGATCA-TATATATCTACTTACTTCGTTCAAGGAACTACCCTAAAT------ 953 consensus_8891#2 AGATTTCATTATCAATATATATCTACTTACTTCTTTCTTT--CCCTCATTAAATAGTTCA 538 consensus_8891#1 TTCATGGATTTCCA-CATAGTTTTTCTTCATAGT-------------------------- 627 * ** ** *** * * *** * consensus_8891#0 ------------------------------------------------------------ consensus_8891#2 TGTTCTTTTTACTTAAGGAAACTGAATTACTTACACACCTAGTGGTTCGAATACATTATA 598 consensus_8891#1 ------------------------------------------------------------ consensus_8891#0 ------------------- consensus_8891#2 GTAGGAGGAAAATGATCTG 617 consensus_8891#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||