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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8900#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 709 fasta sequence
[GTTTAGAACGCTACTCAGCTCAGCTCAGTGGACTGACCCCTGCAGAACCTGGTATAATTGAATCTGTTGGTGGGAAAGCCTATGTGTCACGTGATCCAGAAGGTGCATTGAGACAGCTCGTTCATCGATGTGGTGTTCGGTGGAATGCATATAAAGAGGTTAGGCAGCTTCGTAAACAACTAACCGATATTTTGAATGTGATTATTCCGGATCTTGGTCTTTCGATTGATCTATGCTTACCTAAACCCAGTGATTTTCAATTAATACAGCTGAGACAATTGTTTCTTGTTGGATCACCTTGTCAAATTGCTAAAAAACTTAGTGTCTCTGTCACTGGTTTGCCAGGTAATGAACGTCGTAGACTACGTTATGCCTATGAAATTCCTGGCAAACAAGGACCCGTATTTATTGATTCGAATTCCCCTCTGGCACGTGAAAATTTCCCTTTCGTAGCTTATTTGGAGCTACATACCACTTCAAAACCATTTTTACGTTCTGTTTGCGCAATCGATCCTGGATGGATTCCATTCTTGGCGCCTCATAGTTATGCTGTCAATGAACTTGTATTGACAGATAATGTCGACACCAGTGAAAAGAAGTCTGAAAATCAGAGTATAGCTAACGAATCAAATAATAGGGGAAGTGACGATGATGAAGGCTCTAAATCTGCTCCCAATACATCCGTTACATCAAACTCTCTTGTATCCCT]
[+] EMBL BF936585 [GTTTAGAACGCTACTCAGCTCAGCTCAGTGGACTGACCCCTGCAGAACCTGGTATAATTGAATCTGTTGGTGGGAAAGCCTATGTGTCACGTGATCCAGAAGGTGCATTGAGACAGCTCGTTCATCGATGTGGTGTTCGGTGGAATGCATATAAAGAGGTTAGGCAGCTTCGTAAACAACTAACCGATATTTTGAATGTGATTATTCCGGATCTTGGTCTTTCGATTCATCTATGCTTACCTAAACCCAGTGATTTTCAATTAATACAGCTGAGACAATTGTTTCTTGTTGGATCACCTTGTCAAATTGCTAAAAAACTTAGTGTCTCTGTCACTGGTTTGCCAGGTAATGAACGTCGTAGACTACGTTATGCCTATGAAATTCCTGGCAAACAAGGACCCGTATTTATTGATTCGAATTCCCCTCTGGCACGTGAAAATTTCCCTTTCGTAGCTTATTTGGAGCTACATACCACTTCAAAACCATTTTTACGTTTTGTTTGCGCAATCGATCCTGGATGGATTCCATTCTTGGCGCCTCATAGTTATGCTGTCAATGAACTTGTATTGACAGATAATGTCGACACCAGTGAAAAGAAGTCTG AAATCAGAGTATAGCTA ]
[-] EMBL CD202089 [ GGANAGCCTATGTGTCACGTGATCCAGAAGGTGCATTGAGACAGCTCGTTCATCGATGTGGTGTTCGGTGGAATGCATATAAAGAGGTTAGGCAGCTTCGTAAACAACTAACCGATATTTTGAATGTGATTATTCCGGATCTTGGTCTTTCGATTGATCTATGCTTACCTAAACCCAGTGATTTTCAATTAATACAGCTGAGACAATTGTTTCTTGTTGGATCACCTTGTCAAATTGCTAAAAAACTTAGTGTCTCTGTCACTGGTTTGCCAGGTAATGAACGTCGTAGACTACGTTATGCCTATGAAATTCCTGGCAAACAAGGACCCGTATTTATTGATTCGAATTCCCCTCTGGCACGTGAAAATTTCCCTTTCGTAGCTTATTTGGAGCTACATACCACTTCAAAACCATTTTTACGTTCTGTTTGCGCAATCGATCCTGGATGGATTCCATTCTTGGCGCCTCATAGTTATGCTGTCAATGAACTTGTATTGACAGATAATGTCGACACCAGTGAAAAGAAGTCTGAAAATCAGAGTATAGCTAACGTATCCAATAATAGCGGAAATGAC ]
[-] EMBL CD202084 [ GTGATCCAGAAGGTGCATTGAGACAGCTCGTTCATCGATGTGGTGTTCGGTGGAATGCATATANAGAGGTTAGGCAGCTTCGTAAACAACTAACCGATATTTTGAATGTGATTATTCCGGATCTTGGTCTTTCGATTGATCTATGCTTACCTAAACCCAGTGATTTTCAATTAATACAGCTGAGACAATTGTTTCTTGTTGGATCACCTTGTCAAATTGCTAAAAAACTTAGTGTCTCTGTCACTGGTTTGCCAGGTAATGAACGTCGTAGACTACGTTATGCCTATGAAATTCCTGGCAAACAAGGACCCGTATTTATTGATTCGAATTCCCCTCTGGCACGTGAAAATTTCCCTTTCGTAGCTTATTTGGAGCTACATACCACTTCAAAACCATTTTTACGTTCTGTTTGCGCAATCGATCCTGGATGGATTCCATTCTTGGCGCCTCATAGTTATGCTGTCAATGAACTTGTATTGACAGATAATGTCGACACCAGTGAAAAGAAGTCTGAAAATCAGAGTATAGCTAACGATTCCAATAATAGGGGAAGTGAC ]
[-] EMBL CD097675 [ GGCAGCTTCGTAAACAACTAACCGATATTTTGAATGTGATTATTCCGGATCTTGGTCTTTCGATTGATCTATGCTTACCTAAACCCAGTGATTTTCAATTAATACAGCTGAGACAATTGTTTCTTGTTGGATCACCTTGTCAAATTGCTAATAAACTTAGTGTCTCTGTCACTGGTTTGCCAGGTAATGAACGTCGTAGACTACGTTATGCCTATGAAATTCCTGGCAAACAAGGACCCGTATTTATTGATTCGAATTCCCCTCTGGCACGTGAAAATTTCCCTTTCGTAGCTTATTTGGAGCTACATACCACTTCAAAACCATTTTTACGTTCTGTTTGCGCAATCGATCCTGGATGGATTCCATTCTTGGCGCCTCATAGTTATGCTGTCAATGAACTTGTATTGACAGATAATGTCGACACCAGTGAAAAGAAGTCTGAAAATCAGAGTATAGCTAACGAATCAAATAATAGGGGAAGTGAC ]
[+] EMBL BG932436 [ ACGTGAAAATTTCCCTTTCGTAGCTTATTTGGAGCTACATACCACTTCAAAACCATTTTTACGTTCTGTTTGCGCAATCGATCCTGGATGGATTCCATTCTTGGCGCCTCATAGTTATGCTGTCAATGAACTTGTATTGACAGATAATGTCGACACCAGTGAAAAGAAGTCTGAAAATCAGAGTATAGCTAACGAATCAAATAATAGGGGAAGTGACGATGATGAAGGCTCTAAATCTGCTCCCAATACATCCGTTACATCAAACTCTCTTGTATCCCT]
[-] EMBL CD096874 [ CATTCTTGGCGCCTCATAGTTATGCTGTCAATGAACTTGTATTGACAGATAATGTCGACACCAGTGAAAAGAAGTCTGAAAATCAGAGTATAGCTAACGAATCAAATAATAGGGGAAGTGA ]
consensusID : consensus_8900#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence
[ATAAACATAGATTAGCTAGCAAGTAGCCTGACAAAAATACTTGCAAGCATTAACATTTTTGCCATGAGAATTCAAACCAATTATAAATAGATTTAAAGAAGAGAGAAGAACAGGATTTACAGAATAACGCAGATTTTCTGTGCTTCAAGGCTTTTCTTCAGATTGTATATTTAAGCCGCTCGTCTCCGATGACAAGCATTGAAATATAGTGAATTATTGTTGCTTTGCAAGTCTTTACCTTCTTGATTTATTTAAATTTGTTAAGGGATTAGGGTATATGAAATTCTAACAATGTTTAGAAACAGGACATATTGAGATTCAATGAGACTTGAGAAATACACATGGAAGACATAGCAACTCAATAATAAACATTTTTCTTACAACGTACAAATGGTTTTGAAGTGGTATGTAGCTCCAAATAAGCTACGAAAGGGAAATTTTCACGTGCCAG]
[+] EMBL CD069189 [ATAAACATAGATTAGCTAGCAAGTAGCCTGACAAAAATACTTGCAAGCATTAACATTTTTGCCATGAGAATTCAAACCAATTATAAATAGATTTAAAGAAGAGAGAAGAACAGGATTTACAGAATAACGCAGATTTTCTGTGCTTCAAGGCTTTTCTTCAGATTGTATATTTAAGCCGCTCGTCTCCGATGACAAGCATTGAAATATAGTGAATTATTGTTGCTTTGCAAGTCTTTACCTTCTTGATTTATTTAAATTTGTTAAGGGATTAGGGTATATGAAATTCTAACAATGTTTAGAAACAGGACATATTGAGATTCAATGAGACTTGAGAAATACACATGGAAGACATAGCAACTCAATAATAAACATTTTTCTTACAACGTACAAATGGTTTTGAAGTGGTATGTAGCTCCAAATAAGCTACGAAAGGGAAATTTTCACGTGCCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8900#0 GTTTAGAACGCTACTCAGCTCAGCTCAGTGGACTGACCCCTGCAGAACCTGGTATAATTG 60
consensus_8900#1 ---------------------ATAAACATAGATTAGCTAGCAAGTAGCCTGACAAAAAT- 38
* * ** * * * **** * ** *
consensus_8900#0 AATCTGTTGGTGGGAAAGCCTATGTGTCACGTGA-TCCAGAAGGTGCATTGAGACAGCTC 119
consensus_8900#1 -ACTTGCAAGCATTAA--CATTTTTGCCATGAGAATTCAAACCAATTAT--AAATAG--- 90
* ** * ** * * * ** ** * ** * ** * ** * * **
consensus_8900#0 GTTCATCGATGTGGTGTTCGGTGGAATGCATATAAAGAGGTTAGGCAG-CTTCGTAAACA 178
consensus_8900#1 ATTTAAAGAAGAGA-----GAAGAACAGGATTTACAGAA-TAACGCAGATTTTCTGTGCT 144
** * ** * * * * * * ** ** *** * * **** ** * *
consensus_8900#0 ACTAACCGATATTTTGAATGTGATTATTCCGGATCTTGGTCTTTCGATTGATCTATGCTT 238
consensus_8900#1 TCAAGGCTTTTCTTCAGAT-TGTATATTTAAGCCGCTCGTCTC-CGAT-GACAAGCATTG 201
* * * * ** ** ** **** * * **** **** ** *
consensus_8900#0 ACCTAAACCCAGTGATTTTCAATTAATACAGCTGAGACAATTGTTTCTTGTTGGATCACC 298
consensus_8900#1 AAATATAGTGAATTATTGTTGCTTTGCA-AGTCTTTACCTTCTTGATTTATT---TAAAT 257
* ** * * * *** * ** * ** ** * * ** ** * *
consensus_8900#0 TTGTCAAATTGCTAAAAAACTTAGTGTCTCTGTCACTGGTTTGCCAGGTAATGAACGTCG 358
consensus_8900#1 TTGTTAAGGGATTAGGGTATATGAAAT-TCTAACAATGTTTAG--AAACAGGACATATTG 314
**** ** ** * * * *** ** ** ** * * * * * *
consensus_8900#0 TAGACTACGTTATGCCTATGAAATTCCTGGCAAACAAGGACCCGTATTTATTGATTCGAA 418
consensus_8900#1 -AGATTCAATGAGACTTGAGAAATACACATGGAAGACATAGCA--ACTCAATAATAAACA 371
*** * * * * * ***** * ** * * * * * * * ** *
consensus_8900#0 TTCCCCTCTGGCACGTGAAAATTTCCCTTTCGTAGCTTATTTGGAGCTACATA--CCACT 476
consensus_8900#1 TTTTTCT-TACAACGTACAAATGGTTTTGAAGTGG--TATGTAGCTCCAAATAAGCTACG 428
** ** * **** **** * ** * *** * * * * *** * **
consensus_8900#0 TCAAAACCATTTTTACGTTCTGTTTGCGCAATCGATCCTGGATGGATTCCATTCTTGGCG 536
consensus_8900#1 AAAGGGAAATTTTCACGTGCCAG------------------------------------- 451
* ***** **** *
consensus_8900#0 CCTCATAGTTATGCTGTCAATGAACTTGTATTGACAGATAATGTCGACACCAGTGAAAAG 596
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 AAGTCTGAAAATCAGAGTATAGCTAACGAATCAAATAATAGGGGAAGTGACGATGATGAA 656
consensus_8900#1 ------------------------------------------------------------
consensus_8900#0 GGCTCTAAATCTGCTCCCAATACATCCGTTACATCAAACTCTCTTGTATCCCT 709
consensus_8900#1 -----------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||