These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8900#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 709 fasta sequence [GTTTAGAACGCTACTCAGCTCAGCTCAGTGGACTGACCCCTGCAGAACCTGGTATAATTGAATCTGTTGGTGGGAAAGCCTATGTGTCACGTGATCCAGAAGGTGCATTGAGACAGCTCGTTCATCGATGTGGTGTTCGGTGGAATGCATATAAAGAGGTTAGGCAGCTTCGTAAACAACTAACCGATATTTTGAATGTGATTATTCCGGATCTTGGTCTTTCGATTGATCTATGCTTACCTAAACCCAGTGATTTTCAATTAATACAGCTGAGACAATTGTTTCTTGTTGGATCACCTTGTCAAATTGCTAAAAAACTTAGTGTCTCTGTCACTGGTTTGCCAGGTAATGAACGTCGTAGACTACGTTATGCCTATGAAATTCCTGGCAAACAAGGACCCGTATTTATTGATTCGAATTCCCCTCTGGCACGTGAAAATTTCCCTTTCGTAGCTTATTTGGAGCTACATACCACTTCAAAACCATTTTTACGTTCTGTTTGCGCAATCGATCCTGGATGGATTCCATTCTTGGCGCCTCATAGTTATGCTGTCAATGAACTTGTATTGACAGATAATGTCGACACCAGTGAAAAGAAGTCTGAAAATCAGAGTATAGCTAACGAATCAAATAATAGGGGAAGTGACGATGATGAAGGCTCTAAATCTGCTCCCAATACATCCGTTACATCAAACTCTCTTGTATCCCT] [+] EMBL BF936585 [GTTTAGAACGCTACTCAGCTCAGCTCAGTGGACTGACCCCTGCAGAACCTGGTATAATTGAATCTGTTGGTGGGAAAGCCTATGTGTCACGTGATCCAGAAGGTGCATTGAGACAGCTCGTTCATCGATGTGGTGTTCGGTGGAATGCATATAAAGAGGTTAGGCAGCTTCGTAAACAACTAACCGATATTTTGAATGTGATTATTCCGGATCTTGGTCTTTCGATTCATCTATGCTTACCTAAACCCAGTGATTTTCAATTAATACAGCTGAGACAATTGTTTCTTGTTGGATCACCTTGTCAAATTGCTAAAAAACTTAGTGTCTCTGTCACTGGTTTGCCAGGTAATGAACGTCGTAGACTACGTTATGCCTATGAAATTCCTGGCAAACAAGGACCCGTATTTATTGATTCGAATTCCCCTCTGGCACGTGAAAATTTCCCTTTCGTAGCTTATTTGGAGCTACATACCACTTCAAAACCATTTTTACGTTTTGTTTGCGCAATCGATCCTGGATGGATTCCATTCTTGGCGCCTCATAGTTATGCTGTCAATGAACTTGTATTGACAGATAATGTCGACACCAGTGAAAAGAAGTCTG AAATCAGAGTATAGCTA ] [-] EMBL CD202089 [ GGANAGCCTATGTGTCACGTGATCCAGAAGGTGCATTGAGACAGCTCGTTCATCGATGTGGTGTTCGGTGGAATGCATATAAAGAGGTTAGGCAGCTTCGTAAACAACTAACCGATATTTTGAATGTGATTATTCCGGATCTTGGTCTTTCGATTGATCTATGCTTACCTAAACCCAGTGATTTTCAATTAATACAGCTGAGACAATTGTTTCTTGTTGGATCACCTTGTCAAATTGCTAAAAAACTTAGTGTCTCTGTCACTGGTTTGCCAGGTAATGAACGTCGTAGACTACGTTATGCCTATGAAATTCCTGGCAAACAAGGACCCGTATTTATTGATTCGAATTCCCCTCTGGCACGTGAAAATTTCCCTTTCGTAGCTTATTTGGAGCTACATACCACTTCAAAACCATTTTTACGTTCTGTTTGCGCAATCGATCCTGGATGGATTCCATTCTTGGCGCCTCATAGTTATGCTGTCAATGAACTTGTATTGACAGATAATGTCGACACCAGTGAAAAGAAGTCTGAAAATCAGAGTATAGCTAACGTATCCAATAATAGCGGAAATGAC ] [-] EMBL CD202084 [ GTGATCCAGAAGGTGCATTGAGACAGCTCGTTCATCGATGTGGTGTTCGGTGGAATGCATATANAGAGGTTAGGCAGCTTCGTAAACAACTAACCGATATTTTGAATGTGATTATTCCGGATCTTGGTCTTTCGATTGATCTATGCTTACCTAAACCCAGTGATTTTCAATTAATACAGCTGAGACAATTGTTTCTTGTTGGATCACCTTGTCAAATTGCTAAAAAACTTAGTGTCTCTGTCACTGGTTTGCCAGGTAATGAACGTCGTAGACTACGTTATGCCTATGAAATTCCTGGCAAACAAGGACCCGTATTTATTGATTCGAATTCCCCTCTGGCACGTGAAAATTTCCCTTTCGTAGCTTATTTGGAGCTACATACCACTTCAAAACCATTTTTACGTTCTGTTTGCGCAATCGATCCTGGATGGATTCCATTCTTGGCGCCTCATAGTTATGCTGTCAATGAACTTGTATTGACAGATAATGTCGACACCAGTGAAAAGAAGTCTGAAAATCAGAGTATAGCTAACGATTCCAATAATAGGGGAAGTGAC ] [-] EMBL CD097675 [ GGCAGCTTCGTAAACAACTAACCGATATTTTGAATGTGATTATTCCGGATCTTGGTCTTTCGATTGATCTATGCTTACCTAAACCCAGTGATTTTCAATTAATACAGCTGAGACAATTGTTTCTTGTTGGATCACCTTGTCAAATTGCTAATAAACTTAGTGTCTCTGTCACTGGTTTGCCAGGTAATGAACGTCGTAGACTACGTTATGCCTATGAAATTCCTGGCAAACAAGGACCCGTATTTATTGATTCGAATTCCCCTCTGGCACGTGAAAATTTCCCTTTCGTAGCTTATTTGGAGCTACATACCACTTCAAAACCATTTTTACGTTCTGTTTGCGCAATCGATCCTGGATGGATTCCATTCTTGGCGCCTCATAGTTATGCTGTCAATGAACTTGTATTGACAGATAATGTCGACACCAGTGAAAAGAAGTCTGAAAATCAGAGTATAGCTAACGAATCAAATAATAGGGGAAGTGAC ] [+] EMBL BG932436 [ ACGTGAAAATTTCCCTTTCGTAGCTTATTTGGAGCTACATACCACTTCAAAACCATTTTTACGTTCTGTTTGCGCAATCGATCCTGGATGGATTCCATTCTTGGCGCCTCATAGTTATGCTGTCAATGAACTTGTATTGACAGATAATGTCGACACCAGTGAAAAGAAGTCTGAAAATCAGAGTATAGCTAACGAATCAAATAATAGGGGAAGTGACGATGATGAAGGCTCTAAATCTGCTCCCAATACATCCGTTACATCAAACTCTCTTGTATCCCT] [-] EMBL CD096874 [ CATTCTTGGCGCCTCATAGTTATGCTGTCAATGAACTTGTATTGACAGATAATGTCGACACCAGTGAAAAGAAGTCTGAAAATCAGAGTATAGCTAACGAATCAAATAATAGGGGAAGTGA ] consensusID : consensus_8900#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence [ATAAACATAGATTAGCTAGCAAGTAGCCTGACAAAAATACTTGCAAGCATTAACATTTTTGCCATGAGAATTCAAACCAATTATAAATAGATTTAAAGAAGAGAGAAGAACAGGATTTACAGAATAACGCAGATTTTCTGTGCTTCAAGGCTTTTCTTCAGATTGTATATTTAAGCCGCTCGTCTCCGATGACAAGCATTGAAATATAGTGAATTATTGTTGCTTTGCAAGTCTTTACCTTCTTGATTTATTTAAATTTGTTAAGGGATTAGGGTATATGAAATTCTAACAATGTTTAGAAACAGGACATATTGAGATTCAATGAGACTTGAGAAATACACATGGAAGACATAGCAACTCAATAATAAACATTTTTCTTACAACGTACAAATGGTTTTGAAGTGGTATGTAGCTCCAAATAAGCTACGAAAGGGAAATTTTCACGTGCCAG] [+] EMBL CD069189 [ATAAACATAGATTAGCTAGCAAGTAGCCTGACAAAAATACTTGCAAGCATTAACATTTTTGCCATGAGAATTCAAACCAATTATAAATAGATTTAAAGAAGAGAGAAGAACAGGATTTACAGAATAACGCAGATTTTCTGTGCTTCAAGGCTTTTCTTCAGATTGTATATTTAAGCCGCTCGTCTCCGATGACAAGCATTGAAATATAGTGAATTATTGTTGCTTTGCAAGTCTTTACCTTCTTGATTTATTTAAATTTGTTAAGGGATTAGGGTATATGAAATTCTAACAATGTTTAGAAACAGGACATATTGAGATTCAATGAGACTTGAGAAATACACATGGAAGACATAGCAACTCAATAATAAACATTTTTCTTACAACGTACAAATGGTTTTGAAGTGGTATGTAGCTCCAAATAAGCTACGAAAGGGAAATTTTCACGTGCCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8900#0 GTTTAGAACGCTACTCAGCTCAGCTCAGTGGACTGACCCCTGCAGAACCTGGTATAATTG 60 consensus_8900#1 ---------------------ATAAACATAGATTAGCTAGCAAGTAGCCTGACAAAAAT- 38 * * ** * * * **** * ** * consensus_8900#0 AATCTGTTGGTGGGAAAGCCTATGTGTCACGTGA-TCCAGAAGGTGCATTGAGACAGCTC 119 consensus_8900#1 -ACTTGCAAGCATTAA--CATTTTTGCCATGAGAATTCAAACCAATTAT--AAATAG--- 90 * ** * ** * * * ** ** * ** * ** * ** * * ** consensus_8900#0 GTTCATCGATGTGGTGTTCGGTGGAATGCATATAAAGAGGTTAGGCAG-CTTCGTAAACA 178 consensus_8900#1 ATTTAAAGAAGAGA-----GAAGAACAGGATTTACAGAA-TAACGCAGATTTTCTGTGCT 144 ** * ** * * * * * * ** ** *** * * **** ** * * consensus_8900#0 ACTAACCGATATTTTGAATGTGATTATTCCGGATCTTGGTCTTTCGATTGATCTATGCTT 238 consensus_8900#1 TCAAGGCTTTTCTTCAGAT-TGTATATTTAAGCCGCTCGTCTC-CGAT-GACAAGCATTG 201 * * * * ** ** ** **** * * **** **** ** * consensus_8900#0 ACCTAAACCCAGTGATTTTCAATTAATACAGCTGAGACAATTGTTTCTTGTTGGATCACC 298 consensus_8900#1 AAATATAGTGAATTATTGTTGCTTTGCA-AGTCTTTACCTTCTTGATTTATT---TAAAT 257 * ** * * * *** * ** * ** ** * * ** ** * * consensus_8900#0 TTGTCAAATTGCTAAAAAACTTAGTGTCTCTGTCACTGGTTTGCCAGGTAATGAACGTCG 358 consensus_8900#1 TTGTTAAGGGATTAGGGTATATGAAAT-TCTAACAATGTTTAG--AAACAGGACATATTG 314 **** ** ** * * * *** ** ** ** * * * * * * consensus_8900#0 TAGACTACGTTATGCCTATGAAATTCCTGGCAAACAAGGACCCGTATTTATTGATTCGAA 418 consensus_8900#1 -AGATTCAATGAGACTTGAGAAATACACATGGAAGACATAGCA--ACTCAATAATAAACA 371 *** * * * * * ***** * ** * * * * * * * ** * consensus_8900#0 TTCCCCTCTGGCACGTGAAAATTTCCCTTTCGTAGCTTATTTGGAGCTACATA--CCACT 476 consensus_8900#1 TTTTTCT-TACAACGTACAAATGGTTTTGAAGTGG--TATGTAGCTCCAAATAAGCTACG 428 ** ** * **** **** * ** * *** * * * * *** * ** consensus_8900#0 TCAAAACCATTTTTACGTTCTGTTTGCGCAATCGATCCTGGATGGATTCCATTCTTGGCG 536 consensus_8900#1 AAAGGGAAATTTTCACGTGCCAG------------------------------------- 451 * ***** **** * consensus_8900#0 CCTCATAGTTATGCTGTCAATGAACTTGTATTGACAGATAATGTCGACACCAGTGAAAAG 596 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 AAGTCTGAAAATCAGAGTATAGCTAACGAATCAAATAATAGGGGAAGTGACGATGATGAA 656 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 GGCTCTAAATCTGCTCCCAATACATCCGTTACATCAAACTCTCTTGTATCCCT 709 consensus_8900#1 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||