These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8917#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 902 fasta sequence [GCCAAGATTTGGCACGAGGGGCCGATGTCATAAATATCGGTCGAATTATTTGAGACATCGTTGCCTGTCGGGTCCAACAGTTGCTATGCTACTTCCAACAGCGAGTCACGAGTCGACATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAATAGATCAATCTATTCCATTGTCTCACTTAATAATTCCACATTCTCCAGGACCGAAGATGACGTCAAACTTATCACATCTCAATATGTGTCCTAAGCCGCTTTCTCGTATTTCGAATCCTTTTTTTGAACCTCACTGTTTTTCCAGTACTGAATTTCACTCTACTCATGCATCTCATTCGCGTTTCGCGTGTAGCTAGAATTATTTTAAGTGCTGGCGTACTTTTAACAACCCAACGCATTTCTGATGAAATTTGCCCAGTCAATTTTATGGTCTCGATCCCTGTTTATCTCGTTCCTTGCATTTAACTACTAGATGGCACATTATTACAAATCCTTTGTCCTTCACCACATAAATCTCAGTAATTTACCACCTAGTTATGCCAAGTTTTCATTCTTTCATAGTAATATTATGTATNTGAAATCCTCTAAATTGTAGGATTTTTATCATTCGTACCAACTTATGTTTCGTTCATTCCACACTAACTTTGGAACTGCTTTTCTTCTTTTGTCAGCAACTATTTATACACTGGCGTTTACGTCACGTCAGTGATTGTTCGAATAACTTTCCTTGATTAGGTATTGGAACTAATTTCGTTTTATTCCAGTTCTTTTATACATACGCTTTCTATAATTATGCTTTTTGTTTATATTTATATATGTACTTCGTATAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA] [+] EMBL CD079501 [GCCAAGATTTGGCACGAGGGGCCGATGTCATAAATATCGGTCGAATTATTTGAGACATCGTTGCCTGTCGGGTCCAACAGTTGCTATGCTACTTCCAACAGCGAGTCACGAGTCGACATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAATAGATCAATCTATTCCATTGTCTCACTTAATAATTCCACATTCTCCAGGACCGAAGATGACGTCAAACTTATCACATCTCAATATGTGTCCTAAGCCGCTTTCTCGTATTTCGAATCCTTTTTTTGAACCTCACTGTTTTTCCAGTACTGAATTTCACTCTACTCATGCATCTCATTCGCGTTTCGCGTGTAGCTAGAATTATTTTAAGTGCTGGCGTACTTTTAACAACCCAACGCATTTCTGATGAAATTTGCCCAGTCAATTTTATGGTCTCGATCCCTGTTTATCTCGTTCCTTGCATTTAACTACTAGATGGCACATTATTACAAATCCTTTGTCCTTCACCACATAAATCTCAGTAATTTACCACCTAGTTATGCCAAGTTTTCATTCTTTCATAGTAATATTATGTATNTGAAATCCTCTAAATTGTAGGATTTTTATCATTCGTACCAACTTATGTTTCGTTCATTCCA ] [-] EMBL AI977470 [ TGCCCAGTCAATTTTATGGTCTCGATCCCTGTTTATCTCGTTCCTTGCATTTAACTACTAGATGGCACATTATTACAAATCCTTTGTCCTTCACCACATAAATCTCAGTAATTTACCACCTAGTTATGCCAAGTTTTCATTCTTTCATAGTAATATTATGTATTTGAAATCCTCTAAATTGTAGGATTTTTATCATTCGTACCAACTTATGTTTCGTTCATTCCACACTAACTTTGGAACTGCTTTTCTTCTTTTGTCAGCAACTATTTATACACTGGCGTTTACGTCACGTCAGTGATTGTTCGAATAACTTTCCTTGATTAGGTATTGGAACTAATTTCGTTTTATTCCAGTTCTTTTATACATACGCTTTCTATAATTATGCTTTTTGTTTATATTTATATATGTACTTCGTATAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA] consensusID : consensus_8917#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 630 fasta sequence [TTCCATCCCTGTTTGGTGAGACAGGAATGTCGCATTAATTAGTCTGTCAATTTCCAGACATCGTTTTCTTGCATCCTTTGCTAATTCTCCGGGTGCAGTTCGCTATCTCGAACACTGTTTTTCTACCCGTAATTCTTCGGTTTATCATATTTTTTCATGGTAAACAATTATGTGATGGAGACTTCTCATAAAGTGTCACGAAAACGTTAATACAATCATTTATTTATCTTTGTAGGTGCTTGTCAGTTGGATCTCAGTCGATGTCATAAATATCGGTCGAATTATTTGAGACATCGTTGCCTGTCGGGTCCAACAGTTGCTATGCTACTTCCAACAGCGAGTCACGAGTCGACATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAATAGATCAATCTATTCCATTGTCTCACTTAATAATTCCACATTCTCCAGGACCGAAGATGACGTCAAACTTATCACATCTCAATATGTGTCCTAAGCCGCTTTCTCGTATTTCGAATCCTTTTTTTGAACCTCACTGTTTTTCCAGTACTGAATTTCACTCTACTCATGCATCTCATTCGCGTTTCGCGTGTAGCTAGAATTATTTTAAGTGCTGGCGT] [+] EMBL CD133198 [TTCCATCCCTGTTTGGTGAGACAGGAATGTCGCATTAATTAGTCTGTCAATTTCCAGACATCGTTTTCTTGCATCCTTTGCTAATTCTCCGGGTGCAGTTCGCTATCTCGAACACTGTTTTTCTACCCGTAATTCTTCGGTTTATCATATTTTTTCATGGTAAACAATTATGTGATGGAGACTTCTCATAAAGTGTCACGAAAACGTTAATACAATCATTTATTTATCTTTGTAGGTGCTTGTCAGTTGGATCTCAGTCGATGTCATAAATATCGGTCGAATTATTTGAGACATCGTTGCCTGTCGGGTCCAACAGTTGCTATGCTACTTCCAACAGCGAGTCACGAGTCGACATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAATAGATCAATCTATTCCATTGTCTCACTTAATAAT ] [+] EMBL CD168905 [ TGTGATGGAGACTTCCCATAAAGTGTCACGAAAACGTTAATACAATCATTTATTTATCTTTGTAGGTGCTTGTCAGTTGGATCTCAGTCGATGTCATAAATATCGGTCGAATTATTTGAGACATCGTTGCCTGTCGGGTCCAACAGTTGCTATGCTACTTCCAACAGCGAGTCACGAGTCGACATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAATAGATCAATCTATTCCATTGTCTCACTTAATAATTCCACATTCTCCAGGACCGAAGATGACGTCAAACTTATCACATCTCAATATGTGTCCTAAGCCGCTTTCTCGTATTTCGAATCCTTTTTTTGAACCTCACTGTTTTTCCAGTACTGAATTTCACTCTACTCATGCATCTCATTCGCGTTTCGCGTGTAGCTAGAATTATTTTAAGTGCTGGCGT] [+] EMBL CD137951 [ ATAAATATCGGTCGAATTATTTGAGACATCGTTGCCTGTCGGGTCCAACAGTTGCTATGCTACTTCCAACAGCGAGTCACGAGTCGACATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAATAGATCAATCTATTCCATTGTCTCACTTAATAATTCCACATTCTCCAGGACCGAAGATGACGTCAAACTTATCACACCTCA ] [+] EMBL CD184505 [ TTGCCTGTCGGGTCCAACAGTTGCTATGCTACTTCCAACAGCGAGTCACGAGTCGACATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAATAGATCAATCTATTCCATTGTCTCACTTAATAATTCCACATTCTCCAGGACCGAAGATGACGTCAAACTTATCACATCTCAA ] consensusID : consensus_8917#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [AAAACCCCTAAATTGTAGGATTTTTATCATTCGTACCCAACTTATGNTTCGTTCATTCCACACTAACTTTGGAACTGCTTTTCTTTTTTGTCAGCAACTATTCAGCACACTGGCGTTTACGTCACGTCAGTGATTGTTCGAATAACTTTCCTTGATTAGGTATTGGAACTAATTTCGTTTTATTCCAGTTCTTTTATACATACGCTTTCTATAATTATGCTTTTTGTTTATATTTATTTATGTACTTCGTATATATTGTGTTTACAGTTTTTTTTACGGATCTTTATGCTACTTATTGCTTTTAAAATTATCTATTTACTTTCTGGTCTTACTCGATGACGACATTTCATTCTAATTACTAAGCCAATTACTATAAAGTCCTTGG] [-] EMBL AA999566 [AAAACCCCTAAATTGTAGGATTTTTATCATTCGTACCCAACTTATGNTTCGTTCATTCCACACTAACTTTGGAACTGCTTTTCTTTTTTGTCAGCAACTATTCAGCACACTGGCGTTTACGTCACGTCAGTGATTGTTCGAATAACTTTCCTTGATTAGGTATTGGAACTAATTTCGTTTTATTCCAGTTCTTTTATACATACGCTTTCTATAATTATGCTTTTTGTTTATATTTATTTATGTACTTCGTATATATTGTGTTTACAGTTTTTTTTACGGATCTTTATGCTACTTATTGCTTTTAAAATTATCTATTTACTTTCTGGTCTTACTCGATGACGACATTTCATTCTAATTACTAAGCCAATTACTATAAAGTCCTTGG] consensusID : consensus_8917#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence [CTCCTGCATTTATTGGCAAACACAATATAGTTCCATGCACTGTGACTACCAATTCTGGCAATTCTACTCTTAAAATGTATCCTTACTCAGTGTACTCATGTGCTTGTCAGTTGGATCTCAGTCGATGTCATAAATATCGGTCGAATTATTTGAGACATCGTTGCCTGTCGGGTCCAACAGTTGCTATGCTACTTCCAACAGCGAGTCACGAGTCGACATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAATAGATCAATCTATTCCATTGTCTCACTTAATAATT] [-] EMBL CD183248 [CTCCTGCATTTATTGGCAAACACAATATAGTTCCATGCACTGTGACTACCAATTCTGGCAATTCTACTCTTAAAATGTATCCTTACTCAGTGTACTCATGTGCTTGTCAGTTGGATCTCAGTCGATGTCATAAATATCGGTCGAATTATTTGAGACATCGTTGCCTGTCGGGTCCAACAGTTGCTATGCTACTTCCAACAGCGAGTCACGAGTCGACATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAATAGATCAATCTATTCCATTGTCTCACTTAATAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8917#1 TTCCATCCCTGTTTGGTGAGACAGGAATGTCGCATTAATTAGTCTGTCAATTTCCAGACA 60 consensus_8917#3 ------------------------------------------------------------ consensus_8917#0 ------------------------------------------------------------ consensus_8917#2 ------------------------------------------------------------ consensus_8917#1 TCGTTTTCTTGCATCCTTTGCTAATTCTCCGGGTGCAGTTCGCTATCTCGAACACTGTTT 120 consensus_8917#3 ------------------------------------------------------------ consensus_8917#0 ------------------------------------------------------------ consensus_8917#2 ----------------------------------------------AAAACCCCTAAATT 14 consensus_8917#1 TTCTACCCGTAATTCTTCG-GTTTATCATATTTTTTCATGGTAAACAATTATGTGATGGA 179 consensus_8917#3 ---CTCCTGCATTTATTGGCAAACACAATATAGTTCCATG--------CACTGTGACTAC 49 consensus_8917#0 ------------------------------------------------------------ consensus_8917#2 GTAGGATTTTTATCATTCGTACCCAACTTATGNTTCGTTCATT--CCACACTAACTTTGG 72 consensus_8917#1 GACTTCTCATAAAG-TGTCACGAAAACGTTAATACAATCATTTATTTATCTTTGTAGGTG 238 consensus_8917#3 CAATTCTGGCAATTCTACTCTTAAAATGT-------ATCCTTACTCAGTGTACTCATGTG 102 consensus_8917#0 -----------------------------------------------------GCCAAGA 7 consensus_8917#2 AACTGCTTTTCTTTTTTGTCAGCAACTATTCAGCACACTGGCGTTTACGTCACGTCAGTG 132 consensus_8917#1 CTTGTCAGTTGGATCTCAGTCGAT--GTCATAAATATCGGT--CGAATTATTTGAGACAT 294 consensus_8917#3 CTTGTCAGTTGGATCTCAGTCGAT--GTCATAAATATCGGT--CGAATTATTTGAGACAT 158 consensus_8917#0 TTTGGCACGAGGG-----GCCGAT--GTCATAAATATCGGT--CGAATTATTTGAGACAT 58 consensus_8917#2 ATTGTTCGAATAACTTTCCTTGATTAGGTATTGGAACTAATTTCGTTTTATTCCAGTTCT 192 *** *** * ** * * ** ***** ** * consensus_8917#1 CGTTGCCTGTCGGGTCCAACAGTTGCTATGCTACTT-CCAACAGCGAGTCACG-AGTCGA 352 consensus_8917#3 CGTTGCCTGTCGGGTCCAACAGTTGCTATGCTACTT-CCAACAGCGAGTCACG-AGTCGA 216 consensus_8917#0 CGTTGCCTGTCGGGTCCAACAGTTGCTATGCTACTT-CCAACAGCGAGTCACG-AGTCGA 116 consensus_8917#2 TTTATACATACGCTTTCTATAATT---ATGCTTTTTGTTTATATTTATTTATGTACTTCG 249 * * ** * * * * ** ***** ** * * * * * * * * consensus_8917#1 CATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAA 412 consensus_8917#3 CATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAA 276 consensus_8917#0 CATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAA 176 consensus_8917#2 TATATATTGTGTTTACAGTTTTTTTTACGGATCTTTATGCTACTTATTGCTTTTAA--AA 307 ** * ** ** * * * * * * ** * * * * * * ** consensus_8917#1 TAGATCAATCTATTCCATTGTCTCACTTAATAATTCCACATTCTCCAGGACCGAAGATGA 472 consensus_8917#3 TAGATCAATCTATTCCATTGTCTCACTTAATAATT------------------------- 311 consensus_8917#0 TAGATCAATCTATTCCATTGTCTCACTTAATAATTCCACATTCTCCAGGACCGAAGATGA 236 consensus_8917#2 TT-ATCTATTTACTTTCTGGTCTTACTCGATGACGACATTTCATTCTAATTACTAAGCCA 366 * *** ** ** * * **** *** ** * consensus_8917#1 CGTCAAACTTATCACATCTCAATATGTGTCCTAAGCCGCTTTCTCGTATTTCGAATCCTT 532 consensus_8917#3 ------------------------------------------------------------ consensus_8917#0 CGTCAAACTTATCACATCTCAATATGTGTCCTAAGCCGCTTTCTCGTATTTCGAATCCTT 296 consensus_8917#2 ATTACTATAAAGTCCTTGG----------------------------------------- 385 consensus_8917#1 TTTTTGAACCTCACTGTTTTTCCAGTACTGAATTTCACTCTACTCATGCATCTCATTCGC 592 consensus_8917#3 ------------------------------------------------------------ consensus_8917#0 TTTTTGAACCTCACTGTTTTTCCAGTACTGAATTTCACTCTACTCATGCATCTCATTCGC 356 consensus_8917#2 ------------------------------------------------------------ consensus_8917#1 GTTTCGCGTGTAGCTAGAATTATTTTAAGTGCTGGCGT---------------------- 630 consensus_8917#3 ------------------------------------------------------------ consensus_8917#0 GTTTCGCGTGTAGCTAGAATTATTTTAAGTGCTGGCGTACTTTTAACAACCCAACGCATT 416 consensus_8917#2 ------------------------------------------------------------ consensus_8917#1 ------------------------------------------------------------ consensus_8917#3 ------------------------------------------------------------ consensus_8917#0 TCTGATGAAATTTGCCCAGTCAATTTTATGGTCTCGATCCCTGTTTATCTCGTTCCTTGC 476 consensus_8917#2 ------------------------------------------------------------ consensus_8917#1 ------------------------------------------------------------ consensus_8917#3 ------------------------------------------------------------ consensus_8917#0 ATTTAACTACTAGATGGCACATTATTACAAATCCTTTGTCCTTCACCACATAAATCTCAG 536 consensus_8917#2 ------------------------------------------------------------ consensus_8917#1 ------------------------------------------------------------ consensus_8917#3 ------------------------------------------------------------ consensus_8917#0 TAATTTACCACCTAGTTATGCCAAGTTTTCATTCTTTCATAGTAATATTATGTATNTGAA 596 consensus_8917#2 ------------------------------------------------------------ consensus_8917#1 ------------------------------------------------------------ consensus_8917#3 ------------------------------------------------------------ consensus_8917#0 ATCCTCTAAATTGTAGGATTTTTATCATTCGTACCAACTTATGTTTCGTTCATTCCACAC 656 consensus_8917#2 ------------------------------------------------------------ consensus_8917#1 ------------------------------------------------------------ consensus_8917#3 ------------------------------------------------------------ consensus_8917#0 TAACTTTGGAACTGCTTTTCTTCTTTTGTCAGCAACTATTTATACACTGGCGTTTACGTC 716 consensus_8917#2 ------------------------------------------------------------ consensus_8917#1 ------------------------------------------------------------ consensus_8917#3 ------------------------------------------------------------ consensus_8917#0 ACGTCAGTGATTGTTCGAATAACTTTCCTTGATTAGGTATTGGAACTAATTTCGTTTTAT 776 consensus_8917#2 ------------------------------------------------------------ consensus_8917#1 ------------------------------------------------------------ consensus_8917#3 ------------------------------------------------------------ consensus_8917#0 TCCAGTTCTTTTATACATACGCTTTCTATAATTATGCTTTTTGTTTATATTTATATATGT 836 consensus_8917#2 ------------------------------------------------------------ consensus_8917#1 ------------------------------------------------------------ consensus_8917#3 ------------------------------------------------------------ consensus_8917#0 ACTTCGTATAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTAC 896 consensus_8917#2 ------------------------------------------------------------ consensus_8917#1 ------ consensus_8917#3 ------ consensus_8917#0 TGCGTA 902 consensus_8917#2 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||