These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8924#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 972 fasta sequence [AAATAAATTTATTCACAACCCAATGAGTAATAATTATCAAATTAATATTTATCCCATTATTTCGTTTTCTTTAAAGATTGTAAGGAAAGTAGACAAAACAACTGTTCTATTAGATGCTGATGATCCAGTTAGTCAACTTCATAAATGTGCATTTCATTTAAAAGATACGGATAGAATGTATTTATGTCTTTCACAAGATAAAATTGTTCAATTGCCATCTACACCATGTGATGAAAATCCTTTGCGTGAGAAAATAAATGATGCCGCAGCATGGACTATTATTAGTACAGATAGAGCGGAATATCGTTGGTTTGAACCTAGTCATTTACCAAGTACATACAGAACAAAAGATGGACAAATTAAACCAATCACACCTCCTCCACCATGTCTGACACCAGTTACACCTGTACCAATTGTACGAGATATGCGAGTGAATGGTGGTGGAGATGTTGCAATGCTTGAAATAATTGGTGAAAATTTCAGTCCTAGGCATCAAGTATGGTTTGGTGACGTTCCAGCCCAGACATTTTATCGTTGTGAAGAGCTGATACTATGTTTTGTTCCAGATATATCAGAATTTCACAGAGATTGGACATATATTCAGAAAACTTTAGAGGTGCCAATTAGTTAGTGCGACAAGATGGTATTATCTATGCGAGTGGTTTAACATTTACTTACCATCCAGAATCTGGACCAAGACAACATTGTCAACCAGCACTTGAAATTATACGTGCAGCAAGTATTGCCGCTGTTGCAGCGGCGGCAGCAGCTGCGTCTGCTGTTACCTCATCAAATTCTTTGTCAACATCAGAAGAATTATTATTAGAACCTTCATGTTCTTCTAGATCAGGTATTGTAGTATCTTCTTCAACAATTGAATGTAATAATGTTGTACCACAACAATCATCTGAATTCAATTTATCTCAACATAATAAAGATTCAATGTGCCTTGATAATAATCATAATAATTCA] [+] EMBL CD076458 [AAATAAATTTATTCACAACCCAATGAGTAATAATTATCAAATTAATATTTATCCCATTATTTCGTTTTCTTTAAAGATTGTAAGGAAAGTAGACAAAACAACTGTTCTATTAGATGCTGATGATCCAGTTAGTCAACTTCATAAATGTGCATTTCATTTAAAAGATACGGATAGAATGTATTTATGTCTTTCACAAGATAAAATTGTTCAATTGCCATCTACACCATGTGATGAAAATCCTTTGCGTGAGAAAATAAATGATGCCGCAGCATGGACTATTATTAGTACAGATAGAGCGGAATATCGTTGGTTTGAACCTAGTCATTTACCAAGTACATACAGAACAAAAGATGGACAAATTAAACCAATCACACCTCCTCCACCATGTCTGACACCAGTTACACCTGTACCAATTGTACGAGATATGCGAGTGAATGGTGGTGGAGATGTTGCAATGCTTGAAATAATTGGTGAAAATTTCAGTCCTAGGCATCAAGTATGGTTTGGTGACGTTCCAGCCCAGACATTTTATCGTTGTGAAGAGCTGATACTATGTTTTGTTCCAGATATATCAGAATTTCACAGAGATTGGA ] [-] EMBL CD069669 [ CAAGTATGTTTTGGTGACGTTCCAGCCCAGACATTTTATCGTTGTGAAGAGCTGATACTATGTTTTGTTCCAGATATATCAGAATTTCACAGAGATTGGACATATATTCAGAAAACTTTAGAGGTGCCAATTAGTTAGTGCGACAAGATGGTATTATCTATGCGAGTGGTTTAACATTTACTTACCATCCAGAATCTGGACCAAGACAACATTGTCAACCAGCACTTGAAATTATACGTGCAGCAAGTATTGCCGCTGTTGCAGCGGCGGCAGCAGCTGCGTCTGCTGTTACCTCATCAAATTCTTTGTCAACATCAGAAGAATTATTATTAGAACCTTCATGTTCTTCTAGATCAGGTATTGTAGTATCTTCTTCAACAATTGAATGTAATAATGTTGTACCACAACAATCATCTGAATTCAATTTATCTCAACATAATAAAGATTCAATGTGCCTTGATAATAATCATAATAATTCA] consensusID : consensus_8924#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 817 fasta sequence [GCCCAGAATCGCACGAGGCTTACCATCCAGAATCTGGACCAAGACACATTGTCAACCAGCACTTGAAATTATACGTGCAGCAAGTATTGCCGCTGTTGCAGCGGCGGCAGCAGCTGCGTCTGCTGTTACCTCATCAAATTCTTTGTCAACATCAGAAGAATTATTATTAGAACCTTCATGTTCTTCTAGATCAGGTATTGTAGTATCTTCTTCAACAATTGAATGTAATAATGTTGTACCACAACAATCATCTGAATTCAATTTATCTCAACATAATAAAGATTCAATGTGCCTTAATAATCATAATAATTCATTTCTTGCCTCAGTATCATCATCATATCAAATGATAAGTCGATTAAATAATTGTAATAATACTACTAGTGGTTATTATGAAGATGAAACTTTTAATCAACAACATAACTATTCTCATCCTCATCATCAGGAGCATCAATTACAACAGTCACATCAACAACATCATTATGCTGTTGACACTCAGGAACATCATCTTCTGAGGAATAATAATAATAATTCAAACTCTTTAACTACAACAGATCGTCTATTTTATATTCCAGTGAATACAAGTTGAATCTCTTAGTAAATAAAAGAATTGCTTCAGTTGTTTTTTTTTCCTTTTTCATTTATCAGTTTGTTAAATAGATATTCACGATATTCTTTTCATTTACATACAATAAACCAATAAAAATGATTTATATCTTAAGTCTTTCTTTATGTTCACTTTTTTGTTTTAATTATTGGTTGAATCCAACAAATAATACTGTAGACAAACGTTTATTCACACATTTATCCGATCCTACTC] [+] EMBL CD083387 [GCCCAGAATCGCACGAGGCTTACCATCCAGAATCTGGACCAAGACACATTGTCAACCAGCACTTGAAATTATACGTGCAGCAAGTATTGCCGCTGTTGCAGCGGCGGCAGCAGCTGCGTCTGCTGTTACCTCATCAAATTCTTTGTCAACATCAGAAGAATTATTATTAGAACCTTCATGTTCTTCTAGATCAGGTATTGTAGTATCTTCTTCAACAATTGAATGTAATAATGTTGTACCACAACAATCATCTGAATTCAATTTATCTCAACATAATAAAGATTCAATGTGCCTTGATAATAATCATAATTCATTTCTTGCCTCAGTATCATCATCATATCAAATGATAAGTCGATTAAATAATTGTAATAATACTACTAGTGGTTATTATGAAGATGAAACTTTTAATCAACAACATAACTATTCTCATCCTCATCATCAGGAGCATCAATTACAACAGTCACATCAACAACATCATTATGCTGTTGACACTCAGGAACATCATCTTCTGAGGAATAATAATAATAATTCAAACTCT ] [+] EMBL CD146909 [ AATAATCATAATAATTCATTTCTTGCCTCAGTATCATCATCATATCAAATGATAAGTCGATTAAATAATTGTAATAATACTACTAGTGGTTATTATGAAGATGAAACTTTTAATCAACAACATAACTATTCTCATCCTCATCATCAGGAGCATCAATTACAACAGTCACATCAACAACATCATTATGCTGTTGACACTCAGGAACATCATCTTCTGAGGAATAATAATAATAATTCAAACTCTTTAACTACAACAGATCGTCTATTTTATATTCCAGTGAATACAAGTTGAATCTCTTAGTAAATAAAAGAATTGCTTCAGTTGTTTTTTTTTCCTTTTTCATTTATCAGTTTGTTAAATAGATATTCACGATATTCTTTTCATTTACATACAATAAACCAATAAAAATGATTTATATCTTAAGTCTTTCTTTATGTTCACTTTTTTGTTTTAATTATTGGTTGAATCCAACAAATAATACTGTAGACAAACGTTTATTCACACATTTATCCGATCCTACTC] [+] EMBL CD146938 [ AATAATCATAATAATTCATTTCTTGCCTCAGTATCATCATCATATCAAATGATAAGTCGATTAAATAATTGTAATAATACTACTAGTGGTTATTATGAAGATGAAACTTTTAATCAACAACATAACTATTCTCATCCTCATCATCAGGAGCATCAATTACAACAGTCACATCAACAACATCATTATGCTGTTGACACTCAGGAACATCATCTTCTGAGGAATAATAATAATAATTCAAACTCTTTAACTACAACAGATCGTCTATTTTATATTCCAGTGAATACAAGTTGAATCTCTTAGTAAATAAAAGAATTGCTTCAGTTGTTTTTTTTTCCTTTTTCATTTATCAGTTTGTTAAATAGATATTCACGATATTCTTTTCATTTACATACAATAAACCAATAAAAATGATTTATATCTTAAGTCTTTCTTTATGTTCACTTTTTTGTTTTAATTATTGGTTGAATCCAACAAATAAT ] consensusID : consensus_8924#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 485 fasta sequence [GCTGAACAGTTCACTGTACAAGACGGTTATATACACTATGGTCATACAGTGAAATTGGTCTGTTCAGAAACTGGTATGGCACTTCCTCGTTTAATTGTAAGGAAAGTAGACAAAACAACTGTTCTATTAGATGCTGATGATCCAGTTAGTCAACTTCATAAATGTGCATTTCATTTAAAAGATACGGATAGAATGTATTTATGTCTTTCACAAGATAAAATTGTTCAATTGCCATCTACACCATGTGATGAAAATCCTTTGCGTGAGAAAATAAATGACGCCGCAGCATGGACTATTATTAGTACAGATAGAGCGGAATATCGTTGGTTTGAACCCAGTCATTTACCAAGTACATACAGAACAAAAGATGGACAAATTAAATCAATCACACCTCCTCCACCATGTCTGACACCAGTTACACCTGTACCAATTGTACGAGATATGCGAGTGAATGGTGGTGGAGATGTTGCAATGGTTGAAATAAT] [+] EMBL CD069724 [GCTGAACAGTTCACTGTACAAGACGGTTATATACACTATGGTCATACAGTGAAATTGGTCTGTTCAGAAACTGGTATGGCAg ] [+] EMBL CD069706 [ TGTACAAGACGGTTATATACACTATGGTCATACAGTGAAATTGGTCTGTTCAGAAACTGGTATGGCACTTCCTCGTTTAATTGTAAGGAAAGTAGACAAAACAACTGTTCTATTAGATGCTGATGATCCAGTTAGTCAACTTCATAAATGTGCATTTCATTTAAAAGATACGGATAGAATGTATTTATGTCTTTCACAAGATAAAATTGTTCAATTGCCATCTACACCATGTGATGAAAATCCTTTGCGTGAGAAAATAAATGACGCCGCAGCATGGACTATTATTAGTACAGATAGAGCGGAATATCGTTGGTTTGAACCCAGTCATTTACCAAGTACATACAGAACAAAAGATGGACAAATTAAATCAATCACACCTCCTCCACCATGTCTGACACCAGTTACACCTGTACCAATTGTACGAGATATGCGAGTGAATGGTGGTGGAGATGTTGCAATGGTTGAAATAAT] [+] EMBL CD069703 [ TGTACAAGACGGTTATATACACTATGGTCATACAGTGAAATTGGTCTGTTCAGAAACTGGTATGGCACTTCCTCGTTTAATTGTAAGGAAAGTAGACAAAACAACTGTTCTATTAGATGCTGATGATCCAGTTAGTCAACTTCATAAATGTGCATTTCATTTAAAAGATACGGATAGAATGTATTTATGTCTTTCACAAGATAAAATTGTTCAATTGCCATCTACACCATGTGATGAAAATCCTTTGCGTGAGAAAATAAATGATGCCGCAGCATGGACTATTATTAGTACAGATAGAGCGGAATATCGTTGGTTTGAACCTAGTCATTTACCAAGTACATACAGAACAAAAGATGGACAAATTAAATCAATCACACCTCCTCCACCATGTCTGACACCAGTTACACCTGTAACAATTGTACGAGATATGCGAGTGAATGGTGGTGGAGATGTTGCAATGCTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8924#0 ------------------------AAATAAATT--TATTCACAACCCAATGAGTAATAAT 34 consensus_8924#2 -------GCTGAACA--GTTCACTGTACAAGAC--GGTTATATACACTATG-GTCATA-C 47 consensus_8924#1 GCCCAGAATCGCACGAGGCTTACCATCCAGAATCTGGACCAAGACACATTGTCAACCAGC 60 * ** * ** * consensus_8924#0 TATCAAATTAATATTT----ATC------CCATTATTTCGTTTTCTTTAAAGATTGTAAG 84 consensus_8924#2 AGTGAAATTGGTCTGTTCAGAAA------CTGGTATGGCACTTCCTCGTTTAATTGTAAG 101 consensus_8924#1 ACTTGAAATTATACGTGCAGCAAGTATTGCCGCTGTTGCAGCGGCGGCAGCAGCTGCGTC 120 * ** * * * * * * * * ** consensus_8924#0 GAAAGTAGACAAAACAACTGTTCTATTAGATGCTGATGATCCAGT-TAGTCAACTTCATA 143 consensus_8924#2 GAAAGTAGACAAAACAACTGTTCTATTAGATGCTGATGATCCAGT-TAGTCAACTTCATA 160 consensus_8924#1 TGCTGTTACCTCATCAAATTCTTTGTCAACATCAGAAGAATTATTATTAGAACCTTCATG 180 ** * * *** * * * * * * ** ** * * * * ****** consensus_8924#0 AATGTGCATTTCAT---TTAAAAGAT-------ACGGATAGAATGTATTTATGTCTTTCA 193 consensus_8924#2 AATGTGCATTTCAT---TTAAAAGAT-------ACGGATAGAATGTATTTATGTCTTTCA 210 consensus_8924#1 TTCTTCTAGATCAGGTATTGTAGTATCTTCTTCAACAATTGAATGTAATAATGT--TGTA 238 * * *** ** * ** * ** ******* * **** * * consensus_8924#0 CAAGATAAAATTGTTCAATTGCCATCTACACCA-TGTGATGAAAATCC--TTTGCGTGAG 250 consensus_8924#2 CAAGATAAAATTGTTCAATTGCCATCTACACCA-TGTGATGAAAATCC--TTTGCGTGAG 267 consensus_8924#1 CCACA-ACAATCATCTGAATTCAATTTATCTCAACATAATAAAGATTCAATGTGCCTTAA 297 * * * * *** * * * * ** ** ** * ** ** ** * * *** * * consensus_8924#0 AAAATAAATGATGCCGCAGCATGGACTATTATTAGTA-CAGATAGAGCGGAATATCGTTG 309 consensus_8924#2 AAAATAAATGACGCCGCAGCATGGACTATTATTAGTA-CAGATAGAGCGGAATATCGTTG 326 consensus_8924#1 TAATCATAATAATTCATTTCTTGCCTCAGTATCATCATCATATCAAATGATAAGTCGATT 357 ** * * * * * ** * *** * * ** ** * * * *** * consensus_8924#0 GTTTGAACCTAGTCATTTACCAAGTA-----CATACAGAACAAAAGATGGACAAATTA-- 362 consensus_8924#2 GTTTGAACCCAGTCATTTACCAAGTA-----CATACAGAACAAAAGATGGACAAATTA-- 379 consensus_8924#1 AAATAATTGTAATAATACTACTAGTGGTTATTATGAAGATGAAACTTTTAATCAACAACA 417 * * * * ** * *** ** *** *** * * ** * consensus_8924#0 -AACCAATCACACCTCCTCCACCATG----TC--TGACACCAGTTACACCTGTACCA--A 413 consensus_8924#2 -AATCAATCACACCTCCTCCACCATG----TC--TGACACCAGTTACACCTGTACCA--A 430 consensus_8924#1 TAACTATTCTCATCCTCATCATCAGGAGCATCAATTACAACAGTCACATCAACAACATCA 477 ** * ** ** * * ** ** * ** * *** **** *** * * ** * consensus_8924#0 TTGTACGA--GATATGCGAGTGAATGGTGGT----GGAGATGTTGCAATGCTTGAAATAA 467 consensus_8924#2 TTGTACGA--GATATGCGAGTGAATGGTGGT----GGAGATGTTGCAATGGTTGAAATAA 484 consensus_8924#1 TTATGCTGTTGACACTCAGGAACATCATCTTCTGAGGAATAATAATAATAATTCAAACTC 537 ** * * ** * * * ** * * *** * *** ** *** consensus_8924#0 TTGGTGAAAATTTCAGTCCTAGGCATCAAGTATGGTTTGGTGACGTTCCAGCCCAGACAT 527 consensus_8924#2 T----------------------------------------------------------- 485 consensus_8924#1 TTTAACTACAACAGATCGTCTATTTTATATTCCAGTGAATACAAGTTGAATCTCTTAGTA 597 * consensus_8924#0 TTTATCGTTGTGAAGAGCTGATACTATGTTTTGTTCCAGATATATCAGAATTTCACAGAG 587 consensus_8924#2 ------------------------------------------------------------ consensus_8924#1 AATAAAAGAATTGCTTCAGTTGTTTTTTTTTCCTTTTTCATTTATCAGTTTGTTAAATAG 657 consensus_8924#0 ATTGGACATATATTCAGAAAACTTTAGAGGTGCCAATTAGTTAGTGCGACAAGATGGTAT 647 consensus_8924#2 ------------------------------------------------------------ consensus_8924#1 ATATTCACGATATTCTTTTCATTTACATACAATAAACCAATAAAAATGATTT-ATATCTT 716 consensus_8924#0 TATCTATGCGAGTGGTTTAACATTTACTTACCATCCAGAATCTGGACCAAGACAACATTG 707 consensus_8924#2 ------------------------------------------------------------ consensus_8924#1 AAGTCTTTCTTTATGTTCACTTTTTTGTTTTAATTATTGGTTGAATCCAACAAATAATAC 776 consensus_8924#0 TCAACCAGCACTTGAAATTATACGTGCAGCAAGTATTGCCGCTGTTGCAGCGGCGGCAGC 767 consensus_8924#2 ------------------------------------------------------------ consensus_8924#1 TGTAGACAAACGTTTATTCACACATTTATCCGATCCTACTC------------------- 817 consensus_8924#0 AGCTGCGTCTGCTGTTACCTCATCAAATTCTTTGTCAACATCAGAAGAATTATTATTAGA 827 consensus_8924#2 ------------------------------------------------------------ consensus_8924#1 ------------------------------------------------------------ consensus_8924#0 ACCTTCATGTTCTTCTAGATCAGGTATTGTAGTATCTTCTTCAACAATTGAATGTAATAA 887 consensus_8924#2 ------------------------------------------------------------ consensus_8924#1 ------------------------------------------------------------ consensus_8924#0 TGTTGTACCACAACAATCATCTGAATTCAATTTATCTCAACATAATAAAGATTCAATGTG 947 consensus_8924#2 ------------------------------------------------------------ consensus_8924#1 ------------------------------------------------------------ consensus_8924#0 CCTTGATAATAATCATAATAATTCA 972 consensus_8924#2 ------------------------- consensus_8924#1 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||