These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8925#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1241 fasta sequence [ACTTGCCCGTGCTGCCAGTGAAGAGCGTCGGAGGTCAGAAGCTGAACGTGTTCGCAAGGAACGTGACTTAAATCGCAGTGAGGCTAAACGTGGAAGGCGTCAATTGCGGAGCCTCCTTGTCGAGCAGTTCAATTACTTTTTAGTTGGTGATAAAACTGATACATCTAAAGTAGGATCTCATCAAGTCAAAATTTTAGCTGATATGGATTTGTTATGTCAGCGTTTGTCGAATGCTCAATTGCATGAATTAAATGAATATTTGGAACAAACCGATACCTCTGATAAAGCACATCGCATTTTCTCAGCCAAGGTAGAATCAGTTAAACACGAGCTTCAAGCAAATAATCTGCAGACACAAACTAAACAAAAACCTGAAGAGATTCCTAGTACAGAAAGCCAAACTAATGCTTCTAAATGGACAACAGAAATGATCCAGGTTTTGGTTAAAGCAGTTAATATTCTTCCAGCTGG-AACACCTAAACGTTGGGAAGCGATAGCTGCCTATTTAAATCAGCATATCAGTGGTGTCTCTGTATCCGGTAAAGATGTCTTGAAGCAAGCAAAACTGTTAAAAGAGGAAGATTCTAATTTACGTAAAACAGCTAATACTAAAGCATTTGATTCATTTAGTAATTCTGTCAGAGAAACTGATGCTGTCAAAAACGTGACAATCACAACTCAATTAGAAGCTGAAGCATCTCGTCCTTGGACAGTTGTTGAACAACGTGCCTTAGAACAAGCCCTCAAGACTTATCCAAGTAATGCTGGAGATCCTTGTTCGGATGATCGTTGGCAACTTATTGCAAATGTTGTCGGTACTCGTACTCGA-CGTGAATGCATAATACGGTGTAAAGAGTTAGCAGAACAGGTTCGCGCTAAAAAGGCTGCTTTGGCTGCGGCGCAAGAAATGCGTGAACTTTGTGCCAGAGTTACCTAATATGGTCACAGAATTTTTCCAAAAAGATATAAAACTTTTCATATTGTGTTCGGTTTCAGCGTTTTAGCAAAGACAATCAGTTACATTAGACAAATGAAGTAGGAATAACAGTTTCAGATGTTCATTATTTCGTTTTATTCTCAACTAAACTGTTTAATGTAATGATGAACTACCAAAGTTGGTCGATTTACATGTAAATTTCTTTTCCCTACATACAACTCATATAATCAGTTATACTTATTGATCCTATCAATATTCAGTGTCTTAAAATGTTAACTATTCCTTGATAAAAAAAAAAAAAAAA] [+] EMBL CD069665 [ACTTGCCCGTGCTGCCAGTGAAGAGCGTCGGAGGTCAGAAGCTGAACGTGTTCGCAAGGAACGTGACTTAAATCGCAGTGAGGCTAAACGTGGAAGGCGTCAATTGCGGAGCCTCCTTGTCGAGCAGTTCAATTACTTTTTAGTTGGTGATAAAACTGATACATCTAAAGTAGGATCTCATCAAGTCAAAATTTTAGCTGATATGGATTTGTTATGTCAGCGTTTGTCGAATGCTCAATTGCATGAATTAAATGAATATTTGGAACAAACCGATACCTCTGATAAAGCACATCGCATTTTCTCAGCCAAGGTAGAATCAGTTAAACACGAGCTTCAAGCAAATAATCTGCAGACACAAACTAAACAAAAACCTGAAGAGATTCCTAGTACAGAAAGCCAAACTAATGCTTCTAAATGGACAACAGAAATGATCCAGGTTTTGGTTAAAGCAGTTAATATTCTT ] [+] EMBL CD069660 [ACTTGCCCGTGCTGCCAGTGAAGAGCGTCGGAGGTCAGAAGCTGAACGTGTTCGCAAGGAACGTGACTTAAATCGCAGTGAGGCTAAACGTGGAAGGCGTCAATTGCGGAGCCTCCTTGTCGAGCAGTTCAATTACTTTTTAGTTGGTGATAAAACTGATACATCTAAAGTAGGATCTCATCAAGTCAAAATTTTAGCTGATATGGATTTGTTATGTCAGCGTTTGTCGAATGCTCAATTGCATGAATTAAATGAATATTTGGAACAAACCGATACCTCTGATAAAGCACATCGCATTTTCTCAGCCAAGGTAGAATCAGTTAAACACGAGCTTCAAGCAAATAATCTGCAGACACAAACTAAACAAAAACCTGAAGAGATTCCTAGTACAGAAAGCCAAACTAATGCTTCTAAATGGACAACAGAAATGATCCAGGTTTTGGTTAAAGCAGTTAATATTCTTCCAGCTGG AACACCT ] [+] EMBL CD069662 [ACTTGCCCGTGCTGCCAGTGAAGAGCGTCGGAGGTCAGAAGCTGAACGTGTTCGCAAGGAACGTGACTTAAATCGCAGTGAGGCTAAACGTGGAAGGCGTCAATTGCGGAGCCTCCTTGTCGAGCAGTTCAATTACTTTTTAGTTGGTGATAAAACTGATACATCTAAAGTAGGATCTCATCAAGTCAAAATTTTAGCTGATATGGATTTGTTATGTCAGCGTTTGTCGAATGCTCAATTGCATGAATTAAATGAATATTTGGAACAAACCGATACCTCTGATAAAGCACATCGCATTTTCTCAGCCAAGGTAGAATCAGTTAAACACGAGCTTCAAGCAAATAATCTGCAGACACAAACTAAACAAAAACCTGAAGAGATTCCTAGTACAGAAAGCCAAACTAATGCTTCTAAATGGACAACAGAAATGATCCAGGTTTCGGTTAAAGCAGTTAATATTCTTCCAGCTGGAAACAC ] [+] EMBL CD162407 [ GTCAGAAGCTGAACGTGTTCGCAAGGAACGTGACTTAAATCGCAGTGAGGCTAAACGTGAAAGGCGTCAATTGCGGAGCCTCCTTGTCGAGCAGTTCAATTACTTTTTAGTTGGTGATAAAACTGATACATCTAAAGTAGGATCTCATCAAGTCAAAATTTTAGCTGATATGGATTTGTTATGTCAGCGTTTGTCGAATGCTCAATTGCATGAATTAAATGAATATTTGGAACAAACCGATACCTCTGATAAAGCACATCGCATTTTCTCAGCCAAGGTAGAATCAGTTAAACACGAGCTTCAAGCAAATAATCTGCAGACACAAACTAAACAAAAACCTGAAGAGATTCCTAGTACAGAAAGCCAAACTAATGCTTCTAAACGGACAACAGAAATGATCCAGGTTTTGGTTAAAGCAGTTAATATTCTTCCAGCTGG AACACCTAAACGTTGGGAAGCGATAGCTGCCTATTTAAATCAGCATATCAGTGGTGTCTCTGTATCCGGTAAAGATGTCTTGAAGCAAGCAAAACTGTTAAAAGAGGAAGATTCTAATTTACGTAAAACAGCTAATACTAAAGCATTTGATTCATTTAGTAATTCTGTCAGAGAAACTGATGCTGTCAAAAACGTGANCATCACAACTCAATTAGAAGCTGAA ] [+] EMBL CD157003 [ ATGCTTCTAAATGGACAACAGAAATGATCCAGGTTTTGGTTAAAGCAGTTAATATTCTTCCAGCTGG AACACCTAAACGTTGGGAAGCGATAGCTGCCTATTTAAATCAGCATATCAGTGGTGTCTCTGTATCCGGTAAAGATGTCTTGAAGCAAGCAAAACTGTTAAAAGAGGAAGATTCTAATTTACGTAAAACAGCTAATACTAAAGCATTTGATTCATTTAGTAATTCTGTCAGAGAAACTGATGCTGTCAAAAACGTGACAATCACAACTCAATTAGAAGCTGAAGCATCTCGTCCTTGGACAGTTGTTGAACAACGTGCCTTAGAACAAGCCCTCAAGACTTATCCAAGTAATGCTGGAGATCCTTGTTCGGATGATCGTTGGCAACTTAT ] [-] EMBL CD119224 [ GATGCTGTCAAAAACGTGACAATCACAACTCAATTAGAAGCTGAAGCATCTCGTCCCTGGACAGTTGTTGAACAACGTGCCTTAGAACAAGCCCTCAAGACTTATCCAAGTAATGCTGGAGATCCTTGTTCGGATGATCGTTGGCAACTTATTGCAAATGTTGTCGGTACTCGTACTCGA CGTGAATGCATAATACGGTGTAAAGAGTTAGCAGAACAGGTTCGCGCTAAAAAGGCTGCTTTGGCTGCGGCGCAAGAAATGCGTGAACTTTGTGCCAGAGTTACCTAATATGGTCACAGAATTTTTCCAAAAAGATATAAAACTTTTCATATTGTGTTCGGTTTCAGCGTTTTAGCAAAGACAATCAGTTACATTAGACAAATGAAGTAGGAATA ] [-] EMBL AI395248 [ ACTCGGACT GAGCGTGAATGCATAATACGGTGTAAAGAGTTAGCAGAACAGGTTCGCGCTAAAAAGGCTGCTTTGGCTGCGNC CAAGAAAT CGTGAACTTTGTGCCAGAGTTACCTAATATGGTCACAGAATTTTTCCAAAAAGATATAAAACTTTTCATATTGTGTTCGGTTTCAGCGTTTTAGCAAAGACAATCAGTTACATTAGACAAATGAAGTAGGAATAACAGTTTCAGATGTTCATTATTTCGTTTTATTCTCAACTAAACTGTTTAATGTAATGATGAACTACCAAAGTTGGTCGATTTACATGTAAATTTCTTTTCCCTACATACAACTCATATAATCAGTTATACTTATTGATCCTATCAATATTCAGTGTCTTAAAATGTTAACTATTCCTTGATAAAAAAAAAAAAAAAA] consensusID : consensus_8925#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence [TCGTACTCGTACTCGACGTGAATGCATAATACGTGTAAAAGAGTTAGCAGAACAGGNTCGCGCTAAAAAGGCTGCTTTGCTTGCGGCCAAGAAATCGTGAACTTTGTGCCAGAGTTACCTAATATGGTCACAGAATTTTTCCAAAAAGATATAAAACTTTTCATATTGTGTTCGGTTTCAGCGTTTTAGCAAAGACAATCAGTTACATTAGACAAATGAAGTAGGAATAACAGTTTCAGATGTTCATTATTTCGTTTTATTCTCAACTAAACTGTTTAATGTAATGATGAACTACCAAAGTTGGTCGATTTACATGTAAATTTCTTTTCCCTACATACAACTCATATAATCAGTTATACTTATTGATCCTATCAATATTCAGTGTCTTAAAATGTTAACTATTCCTTGATACACTTGTCTTTTGTATTAAATATTTAGCTTTTTGAGCTTTTATTGCACCATTCGTGCTCTGTGTATAACTGTTTAGTAGAAATACTACACGTGAAAATATAAAAGAGGCAACTGTTTATTAAAAAAAAAAAAAAAAA] [-] EMBL AI395817 [TCGTACTCGTACTCGACGTGAATGCATAATACGTGTAAAAGAGTTAGCAGAACAGGNTCGCGCTAAAAAGGCTGCTTTGCTTGCGGCCAAGAAATCGTGAACTTTGTGCCAGAGTTACCTAATATGGTCACAGAATTTTTCCAAAAAGATATAAAACTTTTCATATTGTGTTCGGTTTCAGCGTTTTAGCAAAGACAATCAGTTACATTAGACAAATGAAGTAGGAATAACAGTTTCAGATGTTCATTATTTCGTTTTATTCTCAACTAAACTGTTTAATGTAATGATGAACTACCAAAGTTGGTCGATTTACATGTAAATTTCTTTTCCCTACATACAACTCATATAATCAGTTATACTTATTGATCCTATCAATATTCAGTGTCTTAAAATGTTAACTATTCCTTGATACACTTGTCTTTTGTATTAAATATTTAGCTTTTTGAGCTTTTATTGCACCATTCGTGCTCTGTGTATAACTGTTTAGTAGAAATACTACACGTGAAAATATAAAAGAGGCAACTGTTTATTAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8925#0 ACTTGCCCGTGCTGCCAGTGAAGAGCGTCGGAGGTCAGAAGCTGAACGTGTTCGCAAGGA 60 consensus_8925#1 ------------------------------------------------------------ consensus_8925#0 ACGTGACTTAAATCGCAGTGAGGCTAAACGTGGAAGGCGTCAATTGCGGAGCCTCCTTGT 120 consensus_8925#1 ------------------------------------------------------------ consensus_8925#0 CGAGCAGTTCAATTACTTTTTAGTTGGTGATAAAACTGATACATCTAAAGTAGGATCTCA 180 consensus_8925#1 ------------------------------------------------------------ consensus_8925#0 TCAAGTCAAAATTTTAGCTGATATGGATTTGTTATGTCAGCGTTTGTCGAATGCTCAATT 240 consensus_8925#1 ------------------------------------------------------------ consensus_8925#0 GCATGAATTAAATGAATATTTGGAACAAACCGATACCTCTGATAAAGCACATCGCATTTT 300 consensus_8925#1 ------------------------------------------------------------ consensus_8925#0 CTCAGCCAAGGTAGAATCAGTTAAACACGAGCTTCAAGCAAATAATCTGCAGACACAAAC 360 consensus_8925#1 ------------------------------------------------------------ consensus_8925#0 TAAACAAAAACCTGAAGAGATTCCTAGTACAGAAAGCCAAACTAATGCTTCTAAATGGAC 420 consensus_8925#1 ------------------------------------------------------------ consensus_8925#0 AACAGAAATGATCCAGGTTTTGGTTAAAGCAGTTAATATTCTTCCAGCTGGAACACCTAA 480 consensus_8925#1 ------------------------------------------------------------ consensus_8925#0 ACGTTGGGAAGCGATAGCTGCCTATTTAAATCAGCATATCAGTGGTGTCTCTGTATCCGG 540 consensus_8925#1 ------------------------------------------------------------ consensus_8925#0 TAAAGATGTCTTGAAGCAAGCAAAACTGTTAAAAGAGGAAGATTCTAATTTACGTAAAAC 600 consensus_8925#1 ------------------------------------------------------------ consensus_8925#0 AGCTAATACTAAAGCATTTGATTCATTTAGTAATTCTGTCAGAGAAACTGATGCTGTCAA 660 consensus_8925#1 ------------------------------------------------------------ consensus_8925#0 AAACGTGACAATCACAACTCAATTAGAAGCTGAAGCATCTCGTCCTTGGACAGTTGTTGA 720 consensus_8925#1 ------------------------------------------------------------ consensus_8925#0 ACAACGTGCCTTAGAACAAGCCCTCAAGACTTATCCAAGTAATGCTGGAGATCCTTGTTC 780 consensus_8925#1 ------------------------------------------------------------ consensus_8925#0 GGATGATCGTTGGCAACTTATTGCAAATGTTGTCGGTACTCGTACTCGACGTGAATGCAT 840 consensus_8925#1 ---------------------------------TCGTACTCGTACTCGACGTGAATGCAT 27 ************************* consensus_8925#0 AATACGGTGTAAAGAGTTAGCAGAACAGGTTCGCGCTAAAAAGGCTGCTTTGGCTGCGGC 900 consensus_8925#1 AATACGTGTAAAAGAGTTAGCAGAACAGGNTCGCGCTAAAAAGGCTGCTTTGCTTGCGGC 87 ****** ******************* ********************** ****** consensus_8925#0 GCAAGAAATGCGTGAACTTTGTGCCAGAGTTACCTAATATGGTCACAGAATTTTTCCAAA 960 consensus_8925#1 -CAAGAAAT-CGTGAACTTTGTGCCAGAGTTACCTAATATGGTCACAGAATTTTTCCAAA 145 ******** ************************************************** consensus_8925#0 AAGATATAAAACTTTTCATATTGTGTTCGGTTTCAGCGTTTTAGCAAAGACAATCAGTTA 1020 consensus_8925#1 AAGATATAAAACTTTTCATATTGTGTTCGGTTTCAGCGTTTTAGCAAAGACAATCAGTTA 205 ************************************************************ consensus_8925#0 CATTAGACAAATGAAGTAGGAATAACAGTTTCAGATGTTCATTATTTCGTTTTATTCTCA 1080 consensus_8925#1 CATTAGACAAATGAAGTAGGAATAACAGTTTCAGATGTTCATTATTTCGTTTTATTCTCA 265 ************************************************************ consensus_8925#0 ACTAAACTGTTTAATGTAATGATGAACTACCAAAGTTGGTCGATTTACATGTAAATTTCT 1140 consensus_8925#1 ACTAAACTGTTTAATGTAATGATGAACTACCAAAGTTGGTCGATTTACATGTAAATTTCT 325 ************************************************************ consensus_8925#0 TTTCCCTACATACAACTCATATAATCAGTTATACTTATTGATCCTATCAATATTCAGTGT 1200 consensus_8925#1 TTTCCCTACATACAACTCATATAATCAGTTATACTTATTGATCCTATCAATATTCAGTGT 385 ************************************************************ consensus_8925#0 CTTAAAATGTTAACTATTCCTTGATAAAAAAAAAAAAAAAA------------------- 1241 consensus_8925#1 CTTAAAATGTTAACTATTCCTTGATACACTTGTCTTTTGTATTAAATATTTAGCTTTTTG 445 ************************** * * consensus_8925#0 ------------------------------------------------------------ consensus_8925#1 AGCTTTTATTGCACCATTCGTGCTCTGTGTATAACTGTTTAGTAGAAATACTACACGTGA 505 consensus_8925#0 ------------------------------------------- consensus_8925#1 AAATATAAAAGAGGCAACTGTTTATTAAAAAAAAAAAAAAAAA 548 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||