These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8927#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 922 fasta sequence [ACAGTATATTCGAAATGAATACAACAAAATTCATTACTGTAATAACACCAAGGTTTCCGTAAATGAACTATCATGAAAAATCAGTAATAAATAAGTACATAAAAACACAAATGATCGAGCAAAGATAATGTGGCTTCACATTAAATTATACGTACATAGATCCCACATAATAAGTGAATGCATGATAAAGCTAATACAAGAAAAACGGGAAAGTAATAGAAATCCTGAAGTGAAACAATTACCTTCGGAGTCGTAAAAGGTATTTCATTCAAAGATTTGAAGGCATGATAAACTCATTTTTCGTGAAAATACATTATATTCATACACAAAGAATAGCGAAAAATAGCTATTGCTGCGAATATTTATTATTAATTAGTGGTATATGTTGCCACTATGAAATCATAATATACTAGGTATAACAATGCAAAATTCCTACATGGTTATCAAGAAAGCGATATTCGTCTTTGTTGAAAAAGTTTCCAGTATACTTGATGAGAGTTTAGAAGAGACAATTTAGTACAAAAAACATAAGATAACACAAATGTGCCGTAAACGCTTCAGGATAAAAT-TACATTGGAGTTTGGTGACCTGACAAAAATACACGTAGAGGTTACTCATATTAGGGTAGAACTAGGTAACTTCAACATAATCATACAATTAAGATTATGAAATAGACTAATGTTGAAAACATTGTATGGAAGTATTTTCTTTTCTTGTTCAGTCTTCATCGTCAATCATATCTTCATCATCACTTTCCTCAGCTTTAAGTTTATTTGTACTTCTATCTGAATCAACGTCTAGAAACTTGTAGTCACATGTAGCCATATCTATTGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAATAGGAACGTTATACTTTTTACACCTTTTTCTGTAAATTCTCCAT] [+] EMBL CD074730 [ACAGTATATTCGAAATGAATACAACAAAATTCATTACTGTAATAACACCAAGGTTTCCGTAAATGAACTATCATGAAAAATCAGTAATAAATAAGTACATAAAAACACAAATGATCGAGCAAAGATAATGTGGCTTCACATTAAATTATACGTACATAGATCCCACATAATAAGTGAATGCATGATAAAGCTAATACAAGAAAAACGGGAAAGTAATAGAAATCCTGAAGTGAAACAATTACCTTCGGAGTCGTAAAAGGTATTTCATTCAAAGATTTGAAGGCATGATAAACTCATTTTTCGTGAAAATACATTATATTCATACACAAAGAATAGCGAAAAATAGCTATTGCTGCGAATATTTATTATTAATTAGTGGTATATGTTGCCACTATGAAATCATAATATACTAGGTATAACAATGCAAAATTCCTACATGGTTATCAAGAAAGCGATATTCGTCTTTGTTGAAAAAGTTTCCAGTATACTTGATGAGAGTTTAGAAGAGACAATTTAGTACAAAAAACATAAGATAACACAAATGTGCCGTAAACGCTTCAGGATAAAATNTACATTGGAGTTTGGTGACCTGACAAAAATACACGTAGAGGTTAC ] [-] EMBL CD185426 [ AATTCTTACATGGTTATCAAGAAAGCGATATTCGTCTTTGTTGAAAAAGTTTCCAGTATACTTGATGAGAGTTTAGAAGAGACAATTTAGTACAAAAAACATAAGATAACACAAATGTGCCGTAAACGCTTCAGGATAAAAT TACATTGGAGTTTGGTGACCTGACAAAAATACACGTAGAGGTTACTCATATTAGGGTAGAACTAGGTAACTTCAACATAATCATACAATTAAGATTATGAAATAGACTAATGTTGAAAACATTGTATGGAAGTATTTTCTTTTCTTGTTCAGTCTTCATCGTCAATCATATCTTCATCATCACTTTCCTCAGCTTTAAGTTTATTTGTACTTCTATCTGAATCAACGTCTAGAAACTTGTAGTCACATGTAGCCATATCTATTGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAATAGGAACGTTATACTTTTTACACCTTTTTCTGTAAATTCTCCAT] [-] EMBL CD133935 [ AATTCCTACATGGTTATCAAGAAAGCGATATTCGTCTTTGTTGAAAAAGTTTCCAGTATACTTGATGAGAGTTTAGAAGAGACAATTTAGTACAAAAAACATAAGATAACACAAATGTGCCGTAAACGCTTCAGGATAAAAT TACATTGGAGTTTGGTGACCTGACAAAAATACACGTAGAGGTTACTCATATTAGGGTAGAACTAGGTAACTTCAACATAATCATACAATTAAGATTATGAAATAGACTAATGTTGAAAACATTGTATGGAAGTATTTTCTTTTCTTGTTCAGTCTTCATCGTCAATCATATCTTCATCATCACTTTCCTCAGCTTTAAGTTTATTTGTACTTCTATCTGAATCAACGTCTAGAAACTTGTAGTCACATGTAGCCATATCTATTGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAATAGGAACGTTATACTTTTTACACCTTTTTCTGTAAATTCTCCAT] consensusID : consensus_8927#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [TCGTGAAAATACATATATTTCATACCATTAATTAGTGGTATATGTTGCCACTATGAAATCATAATATACTAGGTATAACAATGCAAAATTCNTACATGGTTATCAAGAAAGCGATATTCGTCTTTGTTGAAAAAGTTTCCAGTATACTTGATGAGAGTTTAGAAGAGACAATTTAGTACAAAAAACATAAGATAACACAAATTGGAGTTTGGTGACCTGACAAAAATACACGTAGAGGTTACTCATATTAGGGTAGAACTAGGTAACTTCAACATAATCATACAATTAAGATTATGAAATAGACTAATGTTGAAAACATTGTATGGAAGTATTTTCTTTTCTTGTTNNNNNNNNNNNNNNNNTCATATCTTCATCATCACTTTCCTCAGCTTTAAGTTTATTTGTACTTCTATCTGAATCAACGTCTAGAAACTTGTAGTCACATGTAGCCATATCTATTGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAATAGNNNNNNTATACTTTTTACACCAAGCAACTGAAATCCGAGGATCGAGGTAGTTCAGTTTACTTGTACTGAGAGCGATCTCTTTATTTTCATCTCGATCAGTTGCTTGAAGCTGCAATTTTGATAAAGCCTCTTTAGCAGATGCTAGGCGTTTCTTCAGCTTTTG] [-] EMBL CD080898 [TCGTGAAAATACATATATTTCATACCATTAATTAGTGGTATATGTTGCCACTATGAAATCATAATATACTAGGTATAACAATGCAAAATTCNTACATGGTTATCAAGAAAGCGATATTCGTCTTTGTTGAAAAAGTTTCCAGTATACTTGATGAGAGTTTAGAAGAGACAATTTAGTACAAAAAACATAAGATAACACAAATTGGAGTTTGGTGACCTGACAAAAATACACGTAGAGGTTACTCATATTAGGGTAGAACTAGGTAACTTCAACATAATCATACAATTAAGATTATGAAATAGACTAATGTTGAAAACATTGTATGGAAGTATTTTCTTTTCTTGTTNNNNNNNNNNNNNNNNTCATATCTTCATCATCACTTTCCTCAGCTTTAAGTTTATTTGTACTTCTATCTGAATCAACGTCTAGAAACTTGTAGTCACATGTAGCCATATCTATTGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAATAGNNNNNNTATACTTTTTACACCAAGCAACTGAAATCCGAGGATCGAGGTAGTTCAGTTTACTTGTACTGAGAGCGATCTCTTTATTTTCATCTCGATCAGTTGCTTGAAGCTGCAATTTTGATAAAGCCTCTTTAGCAGATGCTAGGCGTTTCTTCAGCTTTTG] consensusID : consensus_8927#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [AGAGGCTTATATATATGCATAGCCATAAGGAATATGATCTTTCGAATGAATGATATCCTGCTAGACCAATACAACACATCTTACCAAGCAACTGAAATCCGAGGATCGAGGTAGTTCAGTTTACTTGTACTGAGAGCGATCTCTTTATTTTCATCTCGATCAGTTGCTTGAAGCTGCAATTTTGATAAAGCCTCTTTAGCAGATGCTAGGCGTTTCTTCAGCTTTTCATAAGCGACCTTCTTGGATGCTTGTTTGTGATTTTTGTAATCTGCTTTTATTTGTTTAGCTTCAGACGTTATTTCCGAAATTTGCTCACGTTTTGCATCGATCTTTTTCTGTAAATTCTCCATTGATTTTGCAAAAGATTTCGGAACTGAACGCTGATGGTTACAGAGAACAGCAACTGCTCGATTTGCTCGATTATATGCCAGAAGTTTAGCAT] [+] EMBL CD069643 [AGAGGCTTATATATATGCATAGCCATAAGGAATATGATCTTTCGAATGAATGATATCCTGCTAGACCAATACAACACATCTTACCAAGCAACTGAAATCCGAGGATCGAGGTAGTTCAGTTTACTTGTACTGAGAGCGATCTCTTTATTTTCATCTCGATCAGTTGCTTGAAGCTGCAATTTTGATAAAGCCTCTTTAGCAGATGCTAGGCGTTTCTTCAGCTTTTCATAAGCGACCTTCTTGGATGCTTGTTTGTGATTTTTGTAATCTGCTTTTATTTGTTTAGCTTCAGACGTTATTTCCGAAATTTGCTCACGTTTTGCATCGATCTTTTTCTGTAAATTCTCCATTGATTTTGCAAAAGATTTCGGAACTGAACGCTGATGGTTACAGAGAACAGCAACTGCTCGATTTGCTCGATTATATGCCAGAAGTTTAGCAT] consensusID : consensus_8927#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 406 fasta sequence [AACTAGGTAACTTCAACATAATCATACAATTAAGATTATGAAATAGACTAATGTTGAAAACATTGTATGGAAGTATTTTCTTTTCTTGTTCAGTCTTCATCGTCAATCATATCTTCATCATCACTTTCCTCAGCTTTAAGTTTATTTGTACTTCTATCTGAATCAACGTCTAGAAACTTGTAGTCACATGTAGCCATATCTATTGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAATAGGAACGTTATACTTTTTACACCTTTTTAAAAGGAATACAAAATAATTACGACTTGAAAATAGATAACTAGCAAAAACAAAGATCAACACATGTGGAGCTGATTGGGACCGAGAAAATTGAAATTGGGATAATTGGTTGTAATATTACGACACGA] [+] EMBL CD137026 [AACTAGGTAACTTCAACATAATCATACAATTAAGATTATGAAATAGACTAATGTTGAAAACATTGTATGGAAGTATTTTCTTTTCTTGTTCAGTCTTCATCGTCAATCATATCTTCATCATCACTTTCCTCAGCTCTAAGTTTATTTGTACTTCTATCTGAATCAACGTCTAGAAACTTGTAGTCACATGTAGCCATATCTATTGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAATAGGAACGTTATACTTTTTACACCTTTTTAAAAGGAATACAAAATAATTACGACTTGAAAATAGATAACTAGCAAAAACAAAGATCAACACATGTGGAGCTGATTGGGACCGAGAAAATTGAAATTGGGATAATTGGTTGTAATATTACGACACG ] [+] EMBL CD136912 [AACTAGGTAACTTCAACATAATCATACAATTAAGATTATGAAATAGACTAATGTTGAAAACATTGTATGGAAGTATTTTCTTTTCTTGTTCAGTCTTCATCGTCAATCATATCTTCATCATCACTTTCCTCAGCTTTAAGTTTATTTGTACTTCTATCTGAATCAACGTCTAGAAACTTGTAGTCACATGTAGCCATATCTATTGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAATAGGAACGTTATACTTTTTACACCTTTTTAAAAGGAATACAAAATAATTACGACTTGAAAATAGATAACTAGCAAAAACAAAGATCAACACATGTGGAGCTGATTGNGACCGAGAAAATTGAAATTGGGATAATTGGTTGTAATATTACGACACG ] [-] EMBL CD137182 [ ACTAGGTAACTTCAACATAATCATACAATTAAGATTATGAAATAGACTAATGTTGAAAACATTGTATGGAAGTATTTTCTTTTCTTGTTCAGTCTTCATCGTCAATCATATCTTCATCATCACTTTCCTCAGCTTTAAGTTTATTTGTACTTCTATCTGAATCAACGTCTAGAAACTTGTAGTCACATGTAGCCATATCTATTGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAATAGGAACGTTATACTTTTTACACCTTTTTAAAAGGAATACAAAATAATTACGACTTGAAAATAGATAACTAGCAAAAACAAAGATCAACACATGTGGAGCTGATTGGGACCGAGAAAATTGAAATTGGGATAATTGGTTGTAATATTACGACACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8927#0 ACAGTATATTCGAAATGAATACAACAAAATTCATTACTGTAATAACACCAAGGTTTCCGT 60 consensus_8927#3 ------------------------------------------------------------ consensus_8927#1 ------------------------------------------------------------ consensus_8927#2 ------------------------------------------------------------ consensus_8927#0 AAATGAACTATCATGAAAAATCAGTAATAAATAAGTACATAAAAACACAAATGATCGAGC 120 consensus_8927#3 ------------------------------------------------------------ consensus_8927#1 ------------------------------------------------------------ consensus_8927#2 ------------------------------------------------------------ consensus_8927#0 AAAGATAATGTGGCTTCACATTAAATTATACGTACATAGATCCCACATAATAAGTGAATG 180 consensus_8927#3 ------------------------------------------------------------ consensus_8927#1 ------------------------------------------------------------ consensus_8927#2 ------------------------------------------------------------ consensus_8927#0 CATGATAAAGCTAATACAAGAAAAACGGGAAAGTAATAGAAATCCTGAAGTGAAACAATT 240 consensus_8927#3 ------------------------------------------------------------ consensus_8927#1 ------------------------------------------------------------ consensus_8927#2 ------------------------------------------------------------ consensus_8927#0 ACCTTCGGAGTCGTAAAAGGTATTTCATTCAAAGATTTGAAGGCATGATAAACTCATTTT 300 consensus_8927#3 ------------------------------------------------------------ consensus_8927#1 ------------------------------------------------------------ consensus_8927#2 ------------------------------------------------------------ consensus_8927#0 TCGTGAAAATACATTATATTCATACACAAAGAATAGCGAAAAATAGCTATTGCTGCGAAT 360 consensus_8927#3 ------------------------------------------------------------ consensus_8927#1 -----------------------------------------TCGTGAAAATACATATATT 19 consensus_8927#2 ------------------------------------------------------------ consensus_8927#0 ATTTATTATTAATTAGTGGTATATGTTGCCACTATGAAATCATAATATACTAGGTATAAC 420 consensus_8927#3 ------------------------------------------------------------ consensus_8927#1 TCATACCATTAATTAGTGGTATATGTTGCCACTATGAAATCATAATATACTAGGTATAAC 79 consensus_8927#2 ------------------------------------------------------------ consensus_8927#0 AATGCAAAATTCCTACATGGTTATCAAGAAAGCGATATTCGTCTTTGTTGAAAAAGTTTC 480 consensus_8927#3 ------------------------------------------------------------ consensus_8927#1 AATGCAAAATTCNTACATGGTTATCAAGAAAGCGATATTCGTCTTTGTTGAAAAAGTTTC 139 consensus_8927#2 ------------------------------------------------------------ consensus_8927#0 CAGTATACTTGATGAGAGTTTAGAAGAGACAATTTAGTACAAAAAACATAAGATAACACA 540 consensus_8927#3 ------------------------------------------------------------ consensus_8927#1 CAGTATACTTGATGAGAGTTTAGAAGAGACAATTTAGTACAAAAAACATAAGATAACACA 199 consensus_8927#2 ------------------------------------------------------------ consensus_8927#0 AATGTGCCGTAAACGCTTCAGGATAAAATTACATTGGAGTTTGGTGACCTGACAAAAATA 600 consensus_8927#3 ------------------------------------------------------------ consensus_8927#1 AAT-------------------------------TGGAGTTTGGTGACCTGACAAAAATA 228 consensus_8927#2 ------------------------AGAGGCTTATATATATGCATAGCCATAAGGAATATG 36 consensus_8927#0 CACGTAGAGGTTACTCATATTAGGGTAGAACTAGGTAACTTCAACATAATCATACAATTA 660 consensus_8927#3 ----------------------------AACTAGGTAACTTCAACATAATCATACAATTA 32 consensus_8927#1 CACGTAGAGGTTACTCATATTAGGGTAGAACTAGGTAACTTCAACATAATCATACAATTA 288 consensus_8927#2 ATCTTTCGAATGAATGATATCCTGCTAGACCAATACAACAC--ATCTTACCAAGCAACTG 94 * * * *** * * * ** *** * consensus_8927#0 AGATTATGAAATAGACTAATGTTGAAAACATTGTA-TGGAAGTATTTTCTTT-------T 712 consensus_8927#3 AGATTATGAAATAGACTAATGTTGAAAACATTGTA-TGGAAGTATTTTCTTT-------T 84 consensus_8927#1 AGATTATGAAATAGACTAATGTTGAAAACATTGTA-TGGAAGTATTTTCTTT-------T 340 consensus_8927#2 AAATCCGAGGATCGAGGTAGTTCAGTTTACTTGTACTGAGAGCGATCTCTTTATTTTCAT 154 * ** ** ** * * ***** ** ** * ***** * consensus_8927#0 CTTGTTCAGTCTTCATCGTCAATCATATCTTCATCATCACTTTCCTCAGCTTTAAGTTTA 772 consensus_8927#3 CTTGTTCAGTCTTCATCGTCAATCATATCTTCATCATCACTTTCCTCAGCTTTAAGTTTA 144 consensus_8927#1 CTTGTTNNNNNNNNNNNNNNNNTCATATCTTCATCATCACTTTCCTCAGCTTTAAGTTTA 400 consensus_8927#2 CTCGATCAGTTGCTTGAAGCTGCAATTTTGATAAAGCCTCTTTAGCAGATGCTAGGCGTT 214 ** * * ** * * * **** ** * * consensus_8927#0 TTTGTACTTCTATCTGAATCAACGTCTAGAA-ACTTGTAGTCACATGTAGCCATATCTAT 831 consensus_8927#3 TTTGTACTTCTATCTGAATCAACGTCTAGAA-ACTTGTAGTCACATGTAGCCATATCTAT 203 consensus_8927#1 TTTGTACTTCTATCTGAATCAACGTCTAGAA-ACTTGTAGTCACATGTAGCCATATCTAT 459 consensus_8927#2 TCTTCAGCTTTTCATAAGCGACCTTCTTGGATGCTTGT--TTGTGATTTTTGTAATCTGC 272 * * * * * * * * * *** * * ***** * * **** consensus_8927#0 TGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAA---TAGGAACGTT 888 consensus_8927#3 TGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAA---TAGGAACGTT 260 consensus_8927#1 TGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAA---TAGNNNNNNT 516 consensus_8927#2 TTTTATTTG---TTTAGCTTCAGACGTTATTTCCGAAATTTGCTCACGTTTTGCATCGAT 329 * ** *** ** *** * * ****** **** * * * consensus_8927#0 ATACTTTTTACACCTTTTTCTGTA-AATTCTCCAT------------------------- 922 consensus_8927#3 ATACTTTTTACACCTTTTTAAAAGGAATACAAAATAATTACGACTTGAAAATAGATAACT 320 consensus_8927#1 ATACTTTTTACACCAAGCAACTGAAATCCGAGGATCGAGGTAGTTC------AGTTTACT 570 consensus_8927#2 CTTTTTCTGTAAATTCTCCATTGATTTTGCAAAAGATTTCGGAACTGAACGCTGATGGTT 389 * ** * * * consensus_8927#0 ------------------------------------------------------------ consensus_8927#3 AGCAAAAACAAAGATCAACACATGTGGAGCTGATTGGGACCGAGAAAATTGAAATTGGGA 380 consensus_8927#1 TGTACTGAGAGCGATCTCTTTATTTTCATCTCGATCAGTTGCTTGAAGCTGCAATTTTGA 630 consensus_8927#2 ACAGAGAACAGCAACTGCTCGATTTGC--TCGATTATATGCCAGAAGTTTAGCAT----- 442 consensus_8927#0 ------------------------------------------ consensus_8927#3 TAATTGGTTGTAATATTACGACACGA---------------- 406 consensus_8927#1 TAAAGCCTCTTTAGCAGATGCTAGGCGTTTCTTCAGCTTTTG 672 consensus_8927#2 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Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||