cluster # 8959

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Schistosoma mansoni
cluster # 8959 cluster # 8959 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8959#0 length = 1286 sequences # 6

consensus_8959#1 length = 315 sequences # 2

consensusID : consensus_8959#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1286
fasta sequence

                              [ATCATGTTACTTTACCAGATTTCAACATAACAAATTAATGCATTTTACATTCAACATCTTGTGAATGTATTTG-AATGAAAAAGTAAAACAAAACTGAACAATGAATATTAATGAATTACAGTCAAGTTGATGATTATGCAACAAAAGTTATTAGTTTGATTATGCAATTCAATTAATGAGACGAATAAATAATGGTGACCAAAA--AAAAATATTGTATATACACATAGTTTAAACAAAAAGTCAGTATTCCAATGAGATTTAGAAATTATATTTCAGCTTTCCAAAGCTTGTCGATTATTAATCTTTTAATTAACAATATAGGAGAAAATCAACAGTTATATAGATTTTAGACAACTCAACCAGGACTCCTAACTAATGTTATATTGTCAGGAAAGAAATCACTGATGGAAAGAGATTTAAATAAATCGTCATACCACATGTTAATTTAGTAAACTACGTTCACTGAAGACACGAGTACGTTGTGCTTCAACATTTCCTTTCCAACGCTGTTGTTGATCTCGAACACGATTTACAACACTAGATACTCCAACAGATGTAGAAGGTATTGTGGTAAGATGTAATCCATTAGGATCTTCAACTTGATCATTTGAAATTAGGCCGGAGCGACTACGTAATCGCCCCCGATTTGAAGGAGTGATTATTCTCAAATTGGAATCCATTAATTGTTTAGAATTCAACTTAGTTTTATCCCAAATAACGGCTTTATCAATAGCTTTAGAATAGACAGCTGAATTGCCACAGTCACTACTACTAACGGGAATATTTATATTAACCCATGAATTAGTTGATCTTGCATCATTTATCTTGTCATTATTATTACTATGCTGA-TTTATAGTAAAGTTACTTGGTTGTTGTGGTTCTGAACATATTCCCATATCAATTATTGTTTTAT-GTGATAAATATCTTGTGGATAGTAATGGTTCAAGTAGTGAGAGAAATAGCATATACAAAACTAATGCTGTAATGATTGTTAGAATAAGGCAAACAACAACTTTTATGGTAGCGGTATTTCTAACCTGAAATTTGCATTCACAATAACGACAAAGGTCTTTATCATTTTGTAACATATATTCACAGGTACATTTCTCAGAAGGAATGGCCTTGACATATATCTTCTTT-GATGATTTGGTATTATTCATATAGGAGCTTGGGAGTAAACAAACACATTTACATCGAGCGTCTTCATAAGCTGCCGAAGCAGTATTTATGATTGATACACATAT-AACAC-GTAT-AAACTTCATTTATAATGCGCTCGTGC-GAATTAT]

[+] EMBL CD075022             [ATCATGTTACTTTACCAGATTTCAACATAACAAATTAATGCATTTTACATTCAACATCTTGTGAATGTATTTG AATGAAAAAGTAAAACAAAACTGAACAATGAATATTAATGAATTACAGTCAAGTTGATGATTATGCAACAAAAGTTATTAGTTTGATTATGCAATTCAATTAATGAGACGAATAAATAATGGTGACCAAAA  AAAAATATTGTATATACACATAGTTTAAACAAAAAGTCAGTATTCCAATGAGATTTAGAAATTATATTTCAGCTTTCCAAAGCTTGTCGATTATTAATCTTTTAATTAACAATATAGGAGAAAATCAACAGTTATATAGATTTTAGACAACTCAACCAGGACTCCTAACTAATGTTATATTGTCAGGAAAGAAATCACTGATGGAAAGAGATTTAAATAAATCGTCATACCACATGTTAATTTAGTAAACTACGTTCACTGAAGACACGAGTACGTTGTGCTTCAACATTTCCTTTCCAACGCTGTTGTTGATCTCGAACACGATTTACAACACTAGATACTCCAACAGATGTAGAAGGTATTGTGGTAAGATGTAATCCATTAGGATCTTCAACTTGATCATTTGAAATTAGGCCGGAGCGACTACGTAATCGCCCCCGATTTGAAGGAGTGATTATTCTNCAATTGGAATCCATTAATTGTTTAGAATTCAACTTAGTTTTATCCCAAATAACGGCTTTATCAATAGCTTTAGAATAGACAGCTGAATTGCCACAGTCACTACTACTAACGGGAATATTTATATTAACCCATGAATTAGTTGATCTTGCATCATTTATCTTGGCATTATTATTACTATGCTGATTTTATAGTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD076178             [                                                       ATCTTGTGAATGTATTTG AATGAAAAAGTAAAACAAAACTGAACAATGAATATTAATGAATTACAGTCAAGTTGATGATTATGCAACAAAAGTTATTAGTTTGATTATGCAATTCAATTAATGAGACGAATAAATAATGGTGACCAAAA  AAAAATATTGTATATACACATAGTTTAAACAAAAAGTCAGTATTCCAATGAGATTTAAAAATTATATTTCAGCTTTCCAAAGCTTGTCGATTATTAATCTTTTAATTAACAATATAGGAGAAAATCAACAGTTATATAGATTTTAGACAACTCAACCAGGACTCCTAACTAATGTTATATTGTCAGGAAAGAAATCACTGATGGAAAGAGATTTAAATAAATCGTCATACCACATGTTAATTTAGTAAACTACGTTCACTGAAGACACGAGTACGTTGTGCTTCAACATTTCCTTTCCAACGCTGTTGTTGATCTCGAACACGATTTACAACACTAGATACTCCAACAGATGTAGAAGGTATTGTGGTAAGATGTAATCCATTAGGATCTTCAACTTGATCATTTGAAATTAGGCCGGAGCGACTACGTAATCGCCCCCGATTTGAAGGAGTGATTATTCTCAAATTGGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL SM851                [                                                                     TTTGNAATGAAAAAGTAAAACAAAACTGAACAATGAATNTTAATGAATTACAGTCAAGTTGATGATTATGCAACAAAAGTTATTAGTTTGATTATGCAATTCAATTAATGAGACGAATAAATANTGGTGACCAANANNAAAActcg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD081194             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTTGTTGATCTCGAACACGATTTACAACACTAGATACTCCAACAGATGTAGAAGGTATTGTGGTAAGATGTAATCCATTAGGATCTTCAACTTGATCATTTGAAATTAGGCCGGAGCGACTACGTAATCGCCCCCGATTTGAAGGAGTGATTATTCTCAAATTGGAATCCATTAATTGTTTAGAATTCAACTTAGTTTTATCCCAAATAACGGCTTTATCAATAGCTTTAGAATAGACAGCTGAATTGCCACAGTCACTACTACTAACGGGAATATTTATATTAACCCATGAATTAGTTGATCTTGCATCATTTATCTTGTCATTATTATTACTATGCTGA TTTATAGTAAAGTTACTTGGTTGTTGTGGTTCTGAACATATTCCCATATCAATTATTGTTTTAT GTGATAAATATCTTGTGGATAGTAATGGTTCAAGTAGTGAGAGAAATAGCATATACAAAACTAATGCTGTAATGATTGTTAGAATAAGGCAAACAACAACTTTTATGGTAGCGGTATTTCTAACCTGAAATTTGCATTCACAATAACGACAAAGGTCTTTATCATTTTGTAACATATATTCACAGGTACATTTCTCAGAAGGAATGGCCTTGACATATATCTTCTTT GATGATTTGGTATTATTCATATAGGAGCTTGGGAGTAAACAAACACATTTACATCGAGCGTCTTCATAAGCTGCCGAAGCAGTATTTATGATTGATACACATAT AACAC GTAT AAACTTCATTTATAATGCGCTCGTGC GAA    ]
[-] EMBL CD082579             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AATCGCCCCCGATTTGAAGGAGTGATATTTCTCAAATTGGAATCCATTAATTGTTTAGAATTCAACTTAGTTTTATCCCAAATAACGGCTTTATCAATCGCTTTAGAATAGACAGCTGAATTGCCACAGTCACTACTACTAACGGGAATATTTATATTAACCCATGAATTAGTTGATCTTGCATCATTTATCTTGTCATTATTATTACTATGTTGA TTGATAGTAAAGTTACTTGGTTGTTGTGGTTCTGAACATATTCCCATATCAATTATTGTTTTAT GTGATAAATATCTTGTGGATAGTAATGGTTCAAGTAGTGAGAGAAATAGCATATACAAAACTAATGCTGTAATGATTGTTAGAATAAGGCAAACAACAACTTTTATGGTAGCGGTATTTCTAACCTGAAATTTGCATTCACAATAACGACAAAGGTCTTTATCATTTTGTAACATATATTCACAGGTACATTTCTCAGAAGGAATGGCCTTGACATATATCTTCTTT GATGATTTGGTATTATTCATATAGGAGCTTGGGAGTAAACAAACACATTTACATCGAGCGTCTTCATAAGCTGCCGAAGCAGTATTTATGATTGATACACATATGAACACTGTATAAAACTTCATTTATAATGCGC GGTCCAGAATTAT]
[-] EMBL CD197602             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      taATAGTAAAGTTACTTGGTTGTTGTGGTTCTGAACATATTCCCATATCAATTATTGTTTTATGGTGATAAATATCTTGTGGATAGTAATGGTTCAAGTAGTGAGAGAAATAGCATATACAAAACTAATGCTGTAATGATTGTTAGAATAAGGCAAACAACAACTTTTATGGTAGCGGTATTTCTAACCTGAAATTTGCATTCACAATAACGACAAAGGTCTTTATCATTTTGTAACATATATTCACAGGTACATTTCTCAGAAGGAATGGCCTTGACATATATCTTCTTTCGATGATTTGGTATTATTCATATAGGAGCTTGGGAGTAAACAAACACATTTACATCGAGCGTCTTCATAAGCTGCCGAAGCAGTATTTATGATT                                                         ]




>consensus_8959#0
ATCATGTTACTTTACCAGATTTCAACATAACAAATTAATGCATTTTACATTCAACATCTT
GTGAATGTATTTGAATGAAAAAGTAAAACAAAACTGAACAATGAATATTAATGAATTACA
GTCAAGTTGATGATTATGCAACAAAAGTTATTAGTTTGATTATGCAATTCAATTAATGAG
ACGAATAAATAATGGTGACCAAAAAAAAATATTGTATATACACATAGTTTAAACAAAAAG
TCAGTATTCCAATGAGATTTAGAAATTATATTTCAGCTTTCCAAAGCTTGTCGATTATTA
ATCTTTTAATTAACAATATAGGAGAAAATCAACAGTTATATAGATTTTAGACAACTCAAC
CAGGACTCCTAACTAATGTTATATTGTCAGGAAAGAAATCACTGATGGAAAGAGATTTAA
ATAAATCGTCATACCACATGTTAATTTAGTAAACTACGTTCACTGAAGACACGAGTACGT
TGTGCTTCAACATTTCCTTTCCAACGCTGTTGTTGATCTCGAACACGATTTACAACACTA
GATACTCCAACAGATGTAGAAGGTATTGTGGTAAGATGTAATCCATTAGGATCTTCAACT
TGATCATTTGAAATTAGGCCGGAGCGACTACGTAATCGCCCCCGATTTGAAGGAGTGATT
ATTCTCAAATTGGAATCCATTAATTGTTTAGAATTCAACTTAGTTTTATCCCAAATAACG
GCTTTATCAATAGCTTTAGAATAGACAGCTGAATTGCCACAGTCACTACTACTAACGGGA
ATATTTATATTAACCCATGAATTAGTTGATCTTGCATCATTTATCTTGTCATTATTATTA
CTATGCTGATTTATAGTAAAGTTACTTGGTTGTTGTGGTTCTGAACATATTCCCATATCA
ATTATTGTTTTATGTGATAAATATCTTGTGGATAGTAATGGTTCAAGTAGTGAGAGAAAT
AGCATATACAAAACTAATGCTGTAATGATTGTTAGAATAAGGCAAACAACAACTTTTATG
GTAGCGGTATTTCTAACCTGAAATTTGCATTCACAATAACGACAAAGGTCTTTATCATTT
TGTAACATATATTCACAGGTACATTTCTCAGAAGGAATGGCCTTGACATATATCTTCTTT
GATGATTTGGTATTATTCATATAGGAGCTTGGGAGTAAACAAACACATTTACATCGAGCG
TCTTCATAAGCTGCCGAAGCAGTATTTATGATTGATACACATATAACACGTATAAACTTC
ATTTATAATGCGCTCGTGCGAATTAT

consensusID : consensus_8959#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 315
fasta sequence

                              [CACNGCTGTGTTGATCTCGAACACGATTTACAACACTAGATACTCCAACAGATGTAGAAGGTATCGTGGTAAGATGTAATCCATTAGGATCTTCAATTTGATCATTTGAAA-TTAGGCCGGAGCGACTACGTAATCGCCCCCGATTTGAAGGAGCTGCTTTAAAGAAAGTAAAACCGAATCCTCACTTTTTACAGTAAATGGGTGAACATAACAAAATCAATAAAATCTGAGCATAAATTATCTGAACGGCAATTATTTTGTATATAAAGTCAATGAAATTGTGATAAAGTACTAAGGTCATGATGGGAAACAGTT]

[-] EMBL CD139588             [CACNGCTGTGTTGATCTCGAACACGATTTACAACACTAGATACTCCAACAGATGTAGAAGGTATCGTGGTAAGATGTAATCCATTAGGATCTTCAATTTGATCATTTGAAA TTAGGCCGGAGCGACTACGTAATCGCCCCCGATTTGAAGGAGCTGCTTTAAAGAAAGTAAAACCGAATCCTCACTTTTTACAGTAAATGGGTGAACATAACAAAATCAATAAAATCTGAGCATAAATTATCTGAACGGCAATTATTTTGTATATAAAGTCAATGAAATTGTGATAAAGTACTAAGGTCATGATGGGAAACAGTT]
[-] EMBL CD139658             [                                                                                      GGATCTTCAATTTGATCA TTGAAATTTAGGCCGGAGCGACTACGTAATCGCCCCCGATTTGAAGGAGCTGCTTTAAAGAAAGTAAAACCGAATCCTCACTTTTTACAGTAAATGGGTGAACATAACAAAATCAATAAAATCTGAGCATAAATTATCTTAACGGCAATTATTTTGTATATAAAGTCAATGAAATTGTGATAAAGTACTAAGGTCATGATGGGAAACAGTT]




>consensus_8959#1
CACNGCTGTGTTGATCTCGAACACGATTTACAACACTAGATACTCCAACAGATGTAGAAG
GTATCGTGGTAAGATGTAATCCATTAGGATCTTCAATTTGATCATTTGAAATTAGGCCGG
AGCGACTACGTAATCGCCCCCGATTTGAAGGAGCTGCTTTAAAGAAAGTAAAACCGAATC
CTCACTTTTTACAGTAAATGGGTGAACATAACAAAATCAATAAAATCTGAGCATAAATTA
TCTGAACGGCAATTATTTTGTATATAAAGTCAATGAAATTGTGATAAAGTACTAAGGTCA
TGATGGGAAACAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8959#0      ATCATGTTACTTTACCAGATTTCAACATAACAAATTAATGCATTTTACATTCAACATCTT 60
consensus_8959#1      ------------------------------------------------------------
                                                                                  

consensus_8959#0      GTGAATGTATTTGAATGAAAAAGTAAAACAAAACTGAACAATGAATATTAATGAATTACA 120
consensus_8959#1      ------------------------------------------------------------
                                                                                  

consensus_8959#0      GTCAAGTTGATGATTATGCAACAAAAGTTATTAGTTTGATTATGCAATTCAATTAATGAG 180
consensus_8959#1      ------------------------------------------------------------
                                                                                  

consensus_8959#0      ACGAATAAATAATGGTGACCAAAAAAAAATATTGTATATACACATAGTTTAAACAAAAAG 240
consensus_8959#1      ------------------------------------------------------------
                                                                                  

consensus_8959#0      TCAGTATTCCAATGAGATTTAGAAATTATATTTCAGCTTTCCAAAGCTTGTCGATTATTA 300
consensus_8959#1      ------------------------------------------------------------
                                                                                  

consensus_8959#0      ATCTTTTAATTAACAATATAGGAGAAAATCAACAGTTATATAGATTTTAGACAACTCAAC 360
consensus_8959#1      ------------------------------------------------------------
                                                                                  

consensus_8959#0      CAGGACTCCTAACTAATGTTATATTGTCAGGAAAGAAATCACTGATGGAAAGAGATTTAA 420
consensus_8959#1      ------------------------------------------------------------
                                                                                  

consensus_8959#0      ATAAATCGTCATACCACATGTTAATTTAGTAAACTACGTTCACTGAAGACACGAGTACGT 480
consensus_8959#1      ------------------------------------------------------------
                                                                                  

consensus_8959#0      TGTGCTTCAACATTTCCTTTCCAACGCTGTTGTTGATCTCGAACACGATTTACAACACTA 540
consensus_8959#1      ---------------------CACNGCTGT-GTTGATCTCGAACACGATTTACAACACTA 38
                                           **  ***** *****************************

consensus_8959#0      GATACTCCAACAGATGTAGAAGGTATTGTGGTAAGATGTAATCCATTAGGATCTTCAACT 600
consensus_8959#1      GATACTCCAACAGATGTAGAAGGTATCGTGGTAAGATGTAATCCATTAGGATCTTCAATT 98
                      ************************** ******************************* *

consensus_8959#0      TGATCATTTGAAATTAGGCCGGAGCGACTACGTAATCGCCCCCGATTTGAAGGAGTGATT 660
consensus_8959#1      TGATCATTTGAAATTAGGCCGGAGCGACTACGTAATCGCCCCCGATTTGAAGGAGCTGCT 158
                      *******************************************************    *

consensus_8959#0      ATTCTCAAATTGGAATCCATTAATTGTTTAGAATTCAACTTAGTTTTATCCCAAATAACG 720
consensus_8959#1      TTAAAGAAAGTAAAACCGAATCCTCACTT----TTTACAGTAAATGGGTGA-ACATAACA 213
                       *    *** *  ** * * *  *   **    ** *   **  *   *   * ***** 

consensus_8959#0      GCTTTATCAATAGCTTTAGAATAGAC-AGCTGAATTGCCACAGTCACTACTACTAACGGG 779
consensus_8959#1      AAATCAATAA-AATCTGAGCATAAATTATCTGAACGGCAATTATT-TTGTATATAAAGTC 271
                         * *  ** *   * ** *** *  * *****  ** *   *   *     *** *  

consensus_8959#0      AAT--ATTTATATTAACCCATGAATTAGTTGATCTTGCATCATTTATCTTGTCATTATTA 837
consensus_8959#1      AATGAAATTGTGATAAAGTACTAAGGTCATGATGGGAAACAGTT---------------- 315
                      ***  * ** *  ***   *  **     ****     *   **                

consensus_8959#0      TTACTATGCTGATTTATAGTAAAGTTACTTGGTTGTTGTGGTTCTGAACATATTCCCATA 897
consensus_8959#1      ------------------------------------------------------------
                                                                                  

consensus_8959#0      TCAATTATTGTTTTATGTGATAAATATCTTGTGGATAGTAATGGTTCAAGTAGTGAGAGA 957
consensus_8959#1      ------------------------------------------------------------
                                                                                  

consensus_8959#0      AATAGCATATACAAAACTAATGCTGTAATGATTGTTAGAATAAGGCAAACAACAACTTTT 1017
consensus_8959#1      ------------------------------------------------------------
                                                                                  

consensus_8959#0      ATGGTAGCGGTATTTCTAACCTGAAATTTGCATTCACAATAACGACAAAGGTCTTTATCA 1077
consensus_8959#1      ------------------------------------------------------------
                                                                                  

consensus_8959#0      TTTTGTAACATATATTCACAGGTACATTTCTCAGAAGGAATGGCCTTGACATATATCTTC 1137
consensus_8959#1      ------------------------------------------------------------
                                                                                  

consensus_8959#0      TTTGATGATTTGGTATTATTCATATAGGAGCTTGGGAGTAAACAAACACATTTACATCGA 1197
consensus_8959#1      ------------------------------------------------------------
                                                                                  

consensus_8959#0      GCGTCTTCATAAGCTGCCGAAGCAGTATTTATGATTGATACACATATAACACGTATAAAC 1257
consensus_8959#1      ------------------------------------------------------------
                                                                                  

consensus_8959#0      TTCATTTATAATGCGCTCGTGCGAATTAT 1286
consensus_8959#1      -----------------------------