cluster # 8961

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Schistosoma mansoni
cluster # 8961 cluster # 8961 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8961#0 length = 1192 sequences # 7

consensus_8961#1 length = 228 sequences # 1

consensusID : consensus_8961#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1192
fasta sequence

                              [TCAAACTCTATTAATACAAAACAATATGGGGGGGAGAAAGTGGGGGATAGTTTGGGAGGGAATCAATTAGTGTAAAAATGAGTAATTTGTAGATTACTAAATTACATAGCTAACTGATATATATATATATATATATATATATATATAACTACAAAATAGAGTAGAAATAGAAATGTATGGGTTGAATGAAAACGAAGTTGATTGAAGAAAGATAAACAAACGAATAAGTAAAGAAACTAAACAGATTTTTTTTTTGAAATTTGCTTAGCAACTATTTCAAAAGGAAGGGAATAAGCATAAGACGTTGTATAATAGACAAAATTTAATGTTGTTGACTGCCTAATTCACGCATTCGATTTAAAGCACTTCCAGCTTTGAACCATTCAATTTGATTCTCATTAAATGTATGCAATAATTGAACTTCTTCAGTTTTACCATTTTCATGGTGAATTACACAACGAACAGGTTTGCCAGGTTGAAGATTTTTCAAATCTAACAGGGAAATTTTATCTGACGGTTTAATTTTATCATAATCTGATGGGTTTGCAAATGTCAATGGAAGCATTCCTTG-TTTTTTCAAATTTGTCTCATGTATACGTGCAAAACTTTTCACAATAATTGCACGACCACCTAAATGTCTAGGCTCCAGGGCAGCGTGTTCCCGACTGCTTCCTTCA-CCATAATTCTCATCACCAATGACGCACCAATTGATACCATCCGCCTTATATTTTCTAGCTACCATTGGAACAGTATCCCACTGACCAGATGGACGATGTAATACTTTATTCATTTCATTATTCTCTTCATTGACAGCTCCAATGAACAAATTATTTGAAATATTATCCAAATGACCTCGATATTTTAACCATTGACCAGCAGCTGAAATATGATCTGTAGTACATTTTCCTTTAATTTTAATTAATATTGGCATTTCAGTTAAATCTTTACCATCCCATTTCTTAAATGGACTAAGTAATTGTAAACGTTGACTTGATGGATCAACTTTAACTGTGATTTTGGAAGTATCTGTCACTGGTGGTTGATATGTATCTTGACCAGGATCAAAACCTTTCATCGGTAGTGTGTCACCTGTTGGTGGTTTAAATTTAAATTTTGATCCATCATCTGCAGTTAGTTCATCCGTCAATGGATTAAATGATAAACTGCCACCGAATACTAAAGCTGTGACTAA]

[+] EMBL CD075845             [TCAAACTCTATTAATACAAAACAATATGGGGGGGAGAAAGTGGGGGATAGTTTGGGAGGGAATCAATTAGTGTAAAAATGAGTAATTTGTAGATTACTAAATTACATAGCTAACTGATATATATATATATATATATATATATATATAACTACAAAATAGAGTAGAAATAGAAATGTATGGGTTGAATGAAAACGAAGTTGATTGAAGAAAGATAAACAAACGAATAAGTAAAGAAACTAAACAGATTTTTTTTTTGAAATTTGCTTAGCAACTATTTCAAAAGGAAGGGAATAAGCATAAGACGTTGTATAATAGACAAAATTTAATGTTGTTGACTGCCTAATTCACGCATTCGATTTAAAGCACTTCCAGCTTTGAACCATTCAATTTGATTCTCATTAAATGTATGCAATAATTGAACTTCTTCAGTTTTACCATTTTCATGGTGAATTACACAACGAACAGGTTTGCCAGGTTGAAGATTTTTCAAATCTAACAGGGAAATTTc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD167104             [                                                                                                                                                                                                                                                                                                 AATAAGCATAAGACGTTGTATAATAGACAAAATTTAATGTTGTTGCCTGCCTAATTCACGCATTCGATTTAAAGCACTTCCTGCTTTGAACCATTCAATTTGATTCTCATTAAATGTATGCAATAATTGAACTTCTTCAGTTTTACCATTTTCATGGTGAATTACACAACGAACAGGTTTGCCAGGTTGAAGATTTTTCAAATCTAACAGGGAAATTTTATCTGACGGTTTAATTTTATCATAATCTGATGGGTTTGCAAATGTCAATGGAAGCATTCCTTG TTTTTTCAAATTTGTCTCATGTATACGTGCAAAACTTTTCACAATAATTGCACGACCACCTAAATGTNTAGGCTCCAGGGCAGCGTGTTCCCGACTGCTTCCTTCA CCATAATTCTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD178153             [                                                                                                                                                                                                                                                                                                         TAAAACGTTGTATAATAGACAAAATTTAATGTTGTTGACTGCCTAATTCACGCATTCGATTTAAAGCACTTCCAGCTTTGAACCATTCAATTTGATTCTCATTAAATGTATGCAATAATTGAACTTCTTCAGTTTTACCATTTTCATGGTGAATTACACAACGAACAGGTTTGCCAGGTTGAAGATTTTTCAAATCTAACAGGGAAATTTTATCTGACGGTTTAATTTTATCATAATCTGATGGGTTTGCAAATGTCAATGGAAGCATTCCTTGTTTTTTTCAAATTTGTCTCATGTATACGTGCAAAACTTTTCACAATAATTGCACGACCACCTAAATGTCTAGGCTCCAGGGCAGCGTGTTCCCGACTGCTTCCTTCA CCATAATTCTCATCACCAATGACGCACCAATTGATACCATCCGCCTTATATTTTCTAGCTACCATTGGAACAGTATCCCACTGACCAGATGGACGATGTAATACTTTATTCATTTCATTATTCTCTTCATTGACAGCTCCAATGAACAAATTATTTGAAATATTATCCAAATGAC                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD127683             [                                                                                                                                                                                                                                                                                                           AGACGTAGTATAATAGACAAAATTTAATGTTGTTGACTGCCTAATTCACGCATTCGATTTAAAGCACTTCCAGCTTTGAACCATTCAATTTGATTCTCATTAAATGTATGCAATAATTGAACTTCTTCAGCTTTACCATTTTCATGGTGAATTACACAACGAACAGGTTTGCCAGGTTGAAGATTTTTCAAATCTAACAGGGAAATTTTATCTGACGGTTTAATTTTATCATAATCTGATGGGTTTGCAAATGTCAATGGAAGCATTCCTTG TTTTTTCAAATTTGTCTCATGTATACGTGCAAAACTTTTCACAATAATTGCACGACCACCTAAATGTNTAGGCTCCAGGGCAGCGTGTTCCCGACTGCTTCCTTCAGCCATAATTCTCAccnata                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD096856             [                                                                                                                                                                                                                                                                                                                                                                                                                     TATGCAATAATTGAACTTCTTCAGTTTTACCATTTTCATGGTGAATTACACAACGAACAGGTTTGCCAGGTTGAAGATTTTTCAAATCTAACAGGGAAATTTTATCTGACGGTTTAATTTTATCATAATCTGATGGGTTTGCAAATGTCAATGGAAGCATTCCTTG TTTTTTCAAATTTGTCTCACGTGTACGTGCAAAACTTTTCACAATAATTGCACGACCACCTAAATGTCTAGGCTCCAGGGCAGCGTGTTCCCGACTGCTTCCTTCA CCATAATTCTCATCACCAATGACGCACCAATTGATACCATCCGCCTTATATTTTCTAGCTACCATTGGAACAGTATCCCACTGACCAGATGGACGATGTAATACTTTATTCATTTCATTATTCTCTTCATTGACAGCTCCAATGAACAAATTATTTGAAATATTATCCAAATGACCTCGATATTTTAACCATTGACCAGCAGCTGAAATATGATCTGTAGTACATTTTCCTTTAATTTTAATTAATATTGGCATTTCAGTTA                                                                                                                                                                                                                                                             ]
[-] EMBL CD068186             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ACACAACGAACAGGTTTGCCAGGTTGAAGATTTTTCAAATCTAACAGGGAAATTTTATCTGACGGTTTAATTTTATCATAATCTGATGGGTTTGCAAATGTCAATGGAAGCATTCCTTG TTTTTTCAAATTTGTCTCATGTATACGTGC AAACTTTTCAC ATAATTGCACGACCACCTAAATGTCTA GCTCCAGGGCAGCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD091343             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AGGCTCCAGGGCAGCGTGTTCCCGACTGCTTCCTTCA CCATAATTCTCATCACCAATGACGCACCAATTGATACCATCCGCCTTATATTTTCTAGCTACCATTGGAACAGTATCCCACTGACCAGATGGACGATGTAATACTTTATTCATTTCATTATTCTCTTCATTGACAGCTCCAATGAACAAATTATTTGAAATATTATCCAAATGACCTCGATATTTTAACCATTGACCAGCAGCTGAAATATGATCTGTAGAACATTTTCCTTTAATTTTAATTAATATTGGCATTTCAGTTAAATCTTTACCATCCCATTTCTTAAATGGACTAAGTAATTGTAAACGTTGACTTGATGGATCAACTTTAACTGTGATTTTGGAAGTATCTGTCACTGGTGGTTGATATGTATCTTGACCAGGATCAAAACCTTTCATCGGTAGTGTGTCACCTGTTGGTGGTTTAAATTTAAATTTTGATCCATCATCTGCAGTTAGTTCATCCGTCAATGGATTAAATGATAAACTGCCACCGAATACTAAAGCTGTGACTAA]




>consensus_8961#0
TCAAACTCTATTAATACAAAACAATATGGGGGGGAGAAAGTGGGGGATAGTTTGGGAGGG
AATCAATTAGTGTAAAAATGAGTAATTTGTAGATTACTAAATTACATAGCTAACTGATAT
ATATATATATATATATATATATATATAACTACAAAATAGAGTAGAAATAGAAATGTATGG
GTTGAATGAAAACGAAGTTGATTGAAGAAAGATAAACAAACGAATAAGTAAAGAAACTAA
ACAGATTTTTTTTTTGAAATTTGCTTAGCAACTATTTCAAAAGGAAGGGAATAAGCATAA
GACGTTGTATAATAGACAAAATTTAATGTTGTTGACTGCCTAATTCACGCATTCGATTTA
AAGCACTTCCAGCTTTGAACCATTCAATTTGATTCTCATTAAATGTATGCAATAATTGAA
CTTCTTCAGTTTTACCATTTTCATGGTGAATTACACAACGAACAGGTTTGCCAGGTTGAA
GATTTTTCAAATCTAACAGGGAAATTTTATCTGACGGTTTAATTTTATCATAATCTGATG
GGTTTGCAAATGTCAATGGAAGCATTCCTTGTTTTTTCAAATTTGTCTCATGTATACGTG
CAAAACTTTTCACAATAATTGCACGACCACCTAAATGTCTAGGCTCCAGGGCAGCGTGTT
CCCGACTGCTTCCTTCACCATAATTCTCATCACCAATGACGCACCAATTGATACCATCCG
CCTTATATTTTCTAGCTACCATTGGAACAGTATCCCACTGACCAGATGGACGATGTAATA
CTTTATTCATTTCATTATTCTCTTCATTGACAGCTCCAATGAACAAATTATTTGAAATAT
TATCCAAATGACCTCGATATTTTAACCATTGACCAGCAGCTGAAATATGATCTGTAGTAC
ATTTTCCTTTAATTTTAATTAATATTGGCATTTCAGTTAAATCTTTACCATCCCATTTCT
TAAATGGACTAAGTAATTGTAAACGTTGACTTGATGGATCAACTTTAACTGTGATTTTGG
AAGTATCTGTCACTGGTGGTTGATATGTATCTTGACCAGGATCAAAACCTTTCATCGGTA
GTGTGTCACCTGTTGGTGGTTTAAATTTAAATTTTGATCCATCATCTGCAGTTAGTTCAT
CCGTCAATGGATTAAATGATAAACTGCCACCGAATACTAAAGCTGTGACTAA

consensusID : consensus_8961#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 228
fasta sequence

                              [TTAATCATAATCTGATGGGTTAGCAAAAGGCAATGGAAGCATTCATTGTTTTTCAAATTTGTCTCATGTATACGTGCAAAACTTGTCACAATCATGNCACGACCACCTAAATGTCTAGGCTCCAGGGCAGCGTGTTCCCGACTGCTTCCTTCACCATAATTCTCATCACCAATGACGCACCAATTGATACCATCCGCCCTATATTTTCTAGNTAACATCGGNCCAGGA]

[-] EMBL CD201695             [TTAATCATAATCTGATGGGTTAGCAAAAGGCAATGGAAGCATTCATTGTTTTTCAAATTTGTCTCATGTATACGTGCAAAACTTGTCACAATCATGNCACGACCACCTAAATGTCTAGGCTCCAGGGCAGCGTGTTCCCGACTGCTTCCTTCACCATAATTCTCATCACCAATGACGCACCAATTGATACCATCCGCCCTATATTTTCTAGNTAACATCGGNCCAGGA]




>consensus_8961#1
TTAATCATAATCTGATGGGTTAGCAAAAGGCAATGGAAGCATTCATTGTTTTTCAAATTT
GTCTCATGTATACGTGCAAAACTTGTCACAATCATGNCACGACCACCTAAATGTCTAGGC
TCCAGGGCAGCGTGTTCCCGACTGCTTCCTTCACCATAATTCTCATCACCAATGACGCAC
CAATTGATACCATCCGCCCTATATTTTCTAGNTAACATCGGNCCAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8961#0      TCAAACTCTATTAATACAAAACAATATGGGGGGGAGAAAGTGGGGGATAGTTTGGGAGGG 60
consensus_8961#1      ------------------------------------------------------------
                                                                                  

consensus_8961#0      AATCAATTAGTGTAAAAATGAGTAATTTGTAGATTACTAAATTACATAGCTAACTGATAT 120
consensus_8961#1      ------------------------------------------------------------
                                                                                  

consensus_8961#0      ATATATATATATATATATATATATATAACTACAAAATAGAGTAGAAATAGAAATGTATGG 180
consensus_8961#1      ------------------------------------------------------------
                                                                                  

consensus_8961#0      GTTGAATGAAAACGAAGTTGATTGAAGAAAGATAAACAAACGAATAAGTAAAGAAACTAA 240
consensus_8961#1      ------------------------------------------------------------
                                                                                  

consensus_8961#0      ACAGATTTTTTTTTTGAAATTTGCTTAGCAACTATTTCAAAAGGAAGGGAATAAGCATAA 300
consensus_8961#1      ------------------------------------------------------------
                                                                                  

consensus_8961#0      GACGTTGTATAATAGACAAAATTTAATGTTGTTGACTGCCTAATTCACGCATTCGATTTA 360
consensus_8961#1      ------------------------------------------------------------
                                                                                  

consensus_8961#0      AAGCACTTCCAGCTTTGAACCATTCAATTTGATTCTCATTAAATGTATGCAATAATTGAA 420
consensus_8961#1      ------------------------------------------------------------
                                                                                  

consensus_8961#0      CTTCTTCAGTTTTACCATTTTCATGGTGAATTACACAACGAACAGGTTTGCCAGGTTGAA 480
consensus_8961#1      ------------------------------------------------------------
                                                                                  

consensus_8961#0      GATTTTTCAAATCTAACAGGGAAATTTTATCTGACGGTTTAATTTTATCATAATCTGATG 540
consensus_8961#1      -------------------------------------------TTAATCATAATCTGATG 17
                                                                 ** **************

consensus_8961#0      GGTTTGCAAATGTCAATGGAAGCATTCCTTGTTTTTTCAAATTTGTCTCATGTATACGTG 600
consensus_8961#1      GGTTAGCAAAAGGCAATGGAAGCATTCATTGTTTTT-CAAATTTGTCTCATGTATACGTG 76
                      **** ***** * ************** ******** ***********************

consensus_8961#0      CAAAACTTTTCACAATAATTGCACGACCACCTAAATGTCTAGGCTCCAGGGCAGCGTGTT 660
consensus_8961#1      CAAAACTTGTCACAATCATGNCACGACCACCTAAATGTCTAGGCTCCAGGGCAGCGTGTT 136
                      ******** ******* **  ***************************************

consensus_8961#0      CCCGACTGCTTCCTTCACCATAATTCTCATCACCAATGACGCACCAATTGATACCATCCG 720
consensus_8961#1      CCCGACTGCTTCCTTCACCATAATTCTCATCACCAATGACGCACCAATTGATACCATCCG 196
                      ************************************************************

consensus_8961#0      CCTTATATTTTCTAGCTACCATTGGAACAGTATCCCACTGACCAGATGGACGATGTAATA 780
consensus_8961#1      CCCTATATTTTCTAGNTAACATCGGNCCAGGA---------------------------- 228
                      ** ************ ** *** **  *** *                            

consensus_8961#0      CTTTATTCATTTCATTATTCTCTTCATTGACAGCTCCAATGAACAAATTATTTGAAATAT 840
consensus_8961#1      ------------------------------------------------------------
                                                                                  

consensus_8961#0      TATCCAAATGACCTCGATATTTTAACCATTGACCAGCAGCTGAAATATGATCTGTAGTAC 900
consensus_8961#1      ------------------------------------------------------------
                                                                                  

consensus_8961#0      ATTTTCCTTTAATTTTAATTAATATTGGCATTTCAGTTAAATCTTTACCATCCCATTTCT 960
consensus_8961#1      ------------------------------------------------------------
                                                                                  

consensus_8961#0      TAAATGGACTAAGTAATTGTAAACGTTGACTTGATGGATCAACTTTAACTGTGATTTTGG 1020
consensus_8961#1      ------------------------------------------------------------
                                                                                  

consensus_8961#0      AAGTATCTGTCACTGGTGGTTGATATGTATCTTGACCAGGATCAAAACCTTTCATCGGTA 1080
consensus_8961#1      ------------------------------------------------------------
                                                                                  

consensus_8961#0      GTGTGTCACCTGTTGGTGGTTTAAATTTAAATTTTGATCCATCATCTGCAGTTAGTTCAT 1140
consensus_8961#1      ------------------------------------------------------------
                                                                                  

consensus_8961#0      CCGTCAATGGATTAAATGATAAACTGCCACCGAATACTAAAGCTGTGACTAA 1192
consensus_8961#1      ----------------------------------------------------