These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8975#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 719 fasta sequence [CAACAGACATGAAAAGAATGAACAAAGATTGGATAGAACTAGAAAGAAAGGCGCAGCCAGGACAGAGTGGGTTGGAGAATGCTGGTCGGTGGCCTGTGCTCCATTGGGAGTAACAGGCATAAGTAATTATTATCGTGGTGCAGTTGGTGCTATCCTAGTTTATGATATATCAAAACCGCATACATTTTTAAATTTAAATAAATGGTTAGAAGAATTAAAAGAATATGCTTCAGATGATGTTATCATTATGTTAATTGGAAATAAATGTGATTTAAAACATTTACGTTGTGTATTAACAGAAGATGCTACAAGATATGCTAAACAACAAGGTATATCATTTATGGAAACATCAGCATTAGATTCAATTAATGTTGAAGAAGCATTTAATCAAACAATAAGAGATATATATTATCTGATTAGTAAACATCCATCATTTAATATGAATGAAACCAATATAATACCAACCAATAATTTACCTATACAAGAACCAAATATAAAACAATCAGCAAAAAGAAAATTTTGTTGTACATAGAAAGGAATGTAAAGTATACATATCTGAATTTCTTTGCTATTTTTTTTTCTTTTTTTTTATACCCCCCCCTTTGATCACTATAATTNTTTTCTTTTTTTTTCATGACCCCCTTTGATCATTNTTTTTCTTTTTTTGGTTTTGTCTATTTACTTTCCTCGTAAACAATAATTATAAAAATGGAAATGTA] [+] EMBL CD079791 [CAACAGACATGAAAAGAATGAACAAAGATTGGATAGAACTAGAAAGAAAGGCGCAGCCAGGACAGAGTGGGTTGGAGAATGCTGGTCGGTGGCCTGTGCTCCATTGGGAGTAACAGGCATAAGTAATTATTATCGTGGTGCAGTTGGTGCTATCCTAGTTTATGATATATCAAAACCGCATACATTTTTAAATTTAAATAAATGGTTAGAAGAATTAAAAGAATATGCTTCAGATGATGTTATCATTATGTTAATTGGAAATAAATGTGATTTAAAACATTTACGTTGTGTATTAACAGAAGATGCTACAAGATATGCTAAACAACAAGGTATATCATTTATGGAAACATCAGCATTAGATTCAATTAATGTTGAAGAAGCATTTAATCAAACAATAAGAGATATATATTATCTGATTAGTAAACATCCATCATTTAATATGAATGAAACCAATATAATACCAACCAATAATTTACCTATACAAGAACCAAATATAAAACAATCAGCAAAAAGAAAATTTTGTTGTACATAGAAAGGAATGTAAAGTATACATATCTGAATTTCTTTGCTATTTTTTTTTCTTTTTTTTTATACCCCCCCCTTTGATCACTATAATTNTTTTCTTTTTTTTTCATGACCCCCTTTGATCATTNTTTTTCTTTTTTTGGTTTTGTCTATTTACTTTCCTCGTAAACAATAATTATAAAAATGGAAATGTA] consensusID : consensus_8975#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 631 fasta sequence [ACTCTGTCCTGGGCCTTCCTTTCTAGTTCTATCCAATTTTTGTTCATTCTTCTCATGTCTGTCTCCATTTCTCGGCGTAATGTGTTCTTTAGTCTTCTTCTTTTCCTTTGGCCTTCAANATTCCATGTGAGTTCTTGTCTTGTGACTCAGTTGTGTGATTTCCTCAAAGTGCGCCCAATCCACTTCCAGTGCTTCTTCCTGATTTCTTCCTCCGCTGAAATCTGGTTTGTTCTCTCCCACAATANAATGTTTTTGATAATGTCTGGCCAACGGATCCGAAGTATTTTGCGTANACAACTGTTAATAAAGGAGGGGGGAATTGGATCAAATTACTTCATATTCATTTTATAAAGTGGGTAAATCTTTTGATTTATAACATCAAAATAACAAAGTATTATAGAAATGTGCAAAAAGAGAACTTATGAATTATTTATTAAGATTTCGATTTTAATTGGCAAGATGTTTTTTCCTTCTGTAAAATAATAAAGAAAAAAAGAAATCCATTGTATTCAATAGACAGTTTTGTTCAGTCACTTAAAAACAATTATAGTAATATATCCAATACTCAATAAATAACTTTGTATATAATCATGTATACGAATGATTTTACTATTTTGAATAAACAAATTTT] [+] EMBL AI110923 [ACTCTGTCCTGGGCCTTCCTTTCTAGTTCTATCCAATTTTTGTTCATTCTTCTCATGTCTGTCTCCATTTCTCGGCGTAATGTGTTCTTTAGTCTTCTTCTTTTCCTTTGGCCTTCAANATTCCATGTGAGTTCTTGTCTTGTGACTCAGTTGTGTGATTTCCTCAAAGTGCGCCCAATCCACTTCCAGTGCTTCTTCCTGATTTCTTCCTCCGCTGAAATCTGGTTTGTTCTCTCCCACAATANAATGTTTTTGATAATGTCTGGCCAACGGATCCGAAGTATTTTGCGTANACAACTGTTAATAAAGGAGGGGGGAATTGGATCAAATTACTTCATATTCATTTTATAAAGTGGGTAAATCTTTTGATTTATAACATCAAA ] [-] EMBL CD076300 [ CTTNTCCTTTGGCCTTCAAGATTCCATGTGAGTTCTTGTCTTGTGACTCAGTTGTGTGATTTCCTCAAAGTGCGCCCAATCCACTTCCAGTGCTTCTTCCTGATTTCTTCCTCCGCTGAAATCTGGTTTGTTCTCTCCCACAATAGAATGTTTTTGATAATGTCTGGCCAACGGATCCGAAGTATTTTGCGTAGACAACTGTTAATAAAGGAGGGGGGAATTGGATCAAATTACTTCATATTCATTTTATAAAGTGGGTAAATCTTTTGATTTATAACATCAAAATAACAAAGTATTATAGAAATGTGCAAAAAGAGAACTTATGAATTATTTATTAAGATTTCGATTTTAATTGGCAAGATGTTTTTTCCTTCTGTAAAATAATAAAGAAAAAAAGAAATCCATTGTATTCAATAGACAGTTTTGTTCAGTCACTTAAAAACAATTATAGTAATATATCCAATACTCAATAAATAACTTTGTATATAATCATGTATACGAATGATTTTACTATTTTGAATAAACAAATTTT] consensusID : consensus_8975#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [CTCTATCCATCTATCATACCCATGTCTATAGTCCCGAACATACACTTTCGCACCAACTTTGTAAGGAATTCTAGTGTTCTGCATTCGAGGATTCTGCCGGGTTACTCGCCTGGGTGCCATCGCACTATGGACTGTTCGTAGCTTCCAACCAGGCTGGAGGAGTTTGATGAATCGATTTTGGAGGTCTGCAGCATGCTGTTGTGTAGTAGCAAGAGTTTTTACTTGATTACAGATAGTGCTGATAAGTAGATTGGCAAGGACAAATTCTTTCAACCCATCTAAACCCAAAAGAATGAGAGGGGATTTGGTGATGGTACACGTACCAATGGAGGGTGTACCTTTTGACCAAATACCACAAGTTAAGTCAACCATGGAGGCCGAGATTGACAACACATGCACTATACGGGTTTCTTGCAAAAATTGGTTGAATTGGAAGGTTAACCCANGGGTCGGCCAAGGTT] [+] EMBL CD162264 [CTCTATCCATCTATCATACCCATGTCTATAGTCCCGAACATACACTTTCGCACCAACTTTGTAAGGAATTCTAGTGTTCTGCATTCGAGGATTCTGCCGGGTTACTCGCCTGGGTGCCATCGCACTATGGACTGTTCGTAGCTTCCAACCAGGCTGGAGGAGTTTGATGAATCGATTTTGGAGGTCTGCAGCATGCTGTTGTGTAGTAGCAAGAGTTTTTACTTGATTACAGATAGTGCTGATAAGTAGATTGGCAAGGACAAATTCTTTCAACCCATCTAAACCCAAAAGAATGAGAGGGGATTTGGTGATGGTACACGTACCAATGGAGGGTGTACCTTTTGACCAAATACCACAAGTTAAGTCAACCATGGAGGCCGAGATTGACAACACATGCACTATACGGGTTTCTTGCAAAAATTGGTTGAATTGGAAGGTTAACCCANGGGTCGGCCAAGGTT] consensusID : consensus_8975#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [TGGTACTGATGACTGTCACAAAGATAATTCGAAACTCACTGATTGATTCCCCGCGGTGTCCGAGTCACCAGGTTGTCTGCAATGTCTGGATCAACAATCCGTACTAATTCGTCTTCTTAAAATTGGGTGTATGGTCCAAAAGTGATATAGTGCAATAGTAACCCCTGATTTGACTGTTGAACGGAAGGCAGAAAAGCGTGGAATTTATTCTGAGTCTGATAAAACGGATGGTACTATGGATGACTGGGACATAAATAAATTAGAAGAAGTGATTAGCAAAAAGCATGATGCTGATAACAAAGGGTTACCACCCAGTACTATAGTATGTAAGTACTTCATTGAAGCAGTGGAACATTTCAAGTATGGTTGGTTTAGGGAGTGTCCGAATGGAAAGACATGTCATTACAGACATT] [+] EMBL CD153557 [TGGTACTGATGACTGTCACAAAGATAATTCGAAACTCACTGATTGATTCCCCGCGGTGTCCGAGTCACCAGGTTGTCTGCAATGTCTGGATCAACAATCCGTACTAATTCGTCTTCTTAAAATTGGGTGTATGGTCCAAAAGTGATATAGTGCAATAGTAACCCCTGATTTGACTGTTGAACGGAAGGCAGAAAAGCGTGGAATTTATTCTGAGTCTGATAAAACGGATGGTACTATGGATGACTGGGACATAAATAAATTAGAAGAAGTGATTAGCAAAAAGCATGATGCTGATAACAAAGGGTTACCACCCAGTACTATAGTATGTAAGTACTTCATTGAAGCAGTGGAACATTTCAAGTATGGTTGGTTTAGGGAGTGTCCGAATGGAAAGACATGTCATTACAGACATT] consensusID : consensus_8975#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence [AACAGTGCCACCCCTGAATTTAAGCCAGCTGAAAGTACTCCGGAGGAAGCAGAGACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGTTTGGACTCTGAATCGAATTCCCGACGCCGCCATGGAGACTAAGGACTATATTCTATGCCCCATATCGCCGTATGTAGGCGGTATTACATTTCAGAGGCGGCGTTTCAACCAACTTTGGGATATACCTGGATGGTACTTGTCCATGTTGATCGATGATGATGTTCAGACTGCATTCCTCGCCTCCAGGAGTTGCGAGTTTCCTACTCGCCTGCCGGGCTTACGGCCACGCACTCCTTGTCTTT] [+] EMBL CD141218 [AACAGTGCCACCCCTGAATTTAAGCCAGCTGAAAGTACTCCGGAGGAAGCAGAGACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGTTTGGACTCTGAATCGAATTCCCGACGCCGCCATGGAGACTAAGGACTATATTCTATGCCCCATATCGCCGTATGTAGGCGGTATTACATTTCAGAGGCGGCGTTTCAACCAACTTTGGGATATACCTGGATGGTACTTGTCCATGTTGATCGATGATGATGTTCAGACTGCATTCCTCGCCTCCAGGAGTTGCGAGTTTCCTACTCGCCTGCCGGGCTTACGGCCACGCACTCCTTGTCTTT] consensusID : consensus_8975#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 194 fasta sequence [TTAGAGAATGTGAAGGCCAAAGATCCAAGATAAAGAAGGGATTCCACCATGATCACCACCGTCTGATCTTTGCTGGTAACGAGCTAGAAGATGGTCACGCACATTGTCTGATTACAATATTCAGAAGAGTCCACTCTTCACTTGGTGTTCGCTGTCGTGAGTACTTATTTGCTATTACTATAACGTTATTACTA] [+] EMBL AA791355 [TTAGAGAATGTGAAGGCCAAAGATCCAAGATAAAGAAGGGATTCCACCATGATCACCACCGTCTGATCTTTGCTGGTAACGAGCTAGAAGATGGTCACGCACATTGTCTGATTACAATATTCAGAAGAGTCCACTCTTCACTTGGTGTTCGCTGTCGTGAGTACTTATTTGCTATTACTATAACGTTATTACTA] consensusID : consensus_8975#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 98 fasta sequence [TTGGTACAACATATTCGTGTGTTGGTGTTTTCCAGCATGGTAAAGTGGATATTTTGAAAATCCCAATAACTGTTGTTTCAGTGGATATAATGAAGCGT] [+] EMBL CD115151 [TTGGTACAACATATTCGTGTGTTGGTGTTTTCCAGCATGGTAAAGTGGATATTTTGAAAATCCCAATAACTGTTGTTTCAGTGGATATAATGAAGCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8975#0 CAACAGACATGAAAAGAATGAACAAAGATTGGATAGAACTAGAAAGAAAGGCGCAGCCAG 60 consensus_8975#1 ------------------------------------------------------------ consensus_8975#6 ------------------------------------------------------------ consensus_8975#5 ------------------------------------------------------------ consensus_8975#2 ------------------------------------------------------------ consensus_8975#4 ------------------------------------------------------------ consensus_8975#3 ------------------------------------------------------------ consensus_8975#0 GACAGAGTGGGTTGGAGAATGCTGGTCGGTGGCCTGTGCTCCATTGGGAGTAACAGGCAT 120 consensus_8975#1 ------------------ACTCTGTCCTGGGCCTTCCTTTCTAGTTCTATC--CAATTTT 40 consensus_8975#6 ------------------------------------------------------------ consensus_8975#5 ------------------------------------------------------------ consensus_8975#2 ------------------------------------------------------------ consensus_8975#4 ------------------------------------------------------------ consensus_8975#3 ------------------------------------------------------------ consensus_8975#0 AAGTAATTATTATCGTGGTGCAGTTGGTGCTATCCTAGTTTATGATATATCAAAACCGCA 180 consensus_8975#1 TGTTCATTCTTCTCATG--TCTGTCTCCATT-TCTCGGCGTAATGTGTTCTTTAGTCTTC 97 consensus_8975#6 ------------------------------------------------------------ consensus_8975#5 ------------------------------------------------------------ consensus_8975#2 ------------------------------------------------------------ consensus_8975#4 ------------------------------------------------------------ consensus_8975#3 ------------------------------------------------------------ consensus_8975#0 TACATTTTTAAATTTAAATAAATGGTTAGAAGAATTAAAAGAATATGCTTCAGATGATGT 240 consensus_8975#1 TTCTTTTCCTTTGGCCTTCAANATTCCATGTGAGTTCTTGTCTTGTGACTCAGTTG---- 153 consensus_8975#6 ------------------------------------------------------------ consensus_8975#5 ------------------------------------------------------------ consensus_8975#2 -----------------------------------------------------------C 1 consensus_8975#4 ------------------------------------------------------------ consensus_8975#3 ------TGGTACTGATGACTGTCACAAAGATAATTCGAAACTCACTGATTGATTCCCCGC 54 consensus_8975#0 TATCATTATGTTAATTGGAAATAAATGTGATTTAAAACATTTACGTTGTGTATTAACAGA 300 consensus_8975#1 TGTGATTTCCTCAAAGTGCGCCCAAT-CCACTTCCAGTGCTTCTTCCTGATTTCTTCCTC 212 consensus_8975#6 ------------------------------------------------------------ consensus_8975#5 ----------------------------------------------------TTAGAGAA 8 consensus_8975#2 TCTATCCATCTATCATACCCATGTCTATAGTCCCGAACATACACTTTCGCACCAACTTTG 61 consensus_8975#4 -------------------AACAGTGCCACCCCTGAATTTAAGCCAGCTGAAAGTACTCC 41 consensus_8975#3 GGTGTCCGAGTCACCAGGTTGTCTGCAATGTCTGGATCAACAATCCGTACTAATTCGTCT 114 consensus_8975#0 AGATGCTACAAGATATGCTAAACAACAAGGTATATCATTTATGGAAACATCAG--CATTA 358 consensus_8975#1 CGCTGAAATCTGGTTTGTTCTCTCCCACAATANAATGTTTTTGATAATGTCTGGCCAACG 272 consensus_8975#6 ----------------------------------------------------------TT 2 consensus_8975#5 TGTGAAGGCCAAAGATCCAAGATAAAGAAGGGATTCCACCATGATCACCACCGTCTGATC 68 consensus_8975#2 TAAGGAATTCTAGTGTTCTGCATTCGAGGATTCTGCCGGGTTACTCGCCTGGGTGCCATC 121 consensus_8975#4 GGAGGAAGCAGAGACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAG 101 consensus_8975#3 TCTTAAAATTGGGTGTATGGTCCAAAAGTGATATAGTGCAATAGTAACCCCTGATTTGAC 174 consensus_8975#0 GATTCAATTAATGT-TG-AAGAAGCATTTAATCAAACAATAAGAGATATATATTATCTGA 416 consensus_8975#1 GATCCGAAGTATTT-TG-CGTANACAACTG-TTAATAAAGGAGGGGGGAATTGGATCAAA 329 consensus_8975#6 GGTACAACATATTCGTG-TGTTGGTGTTT--TCCAGCATGGTAAAGTGGATATTTTGAAA 59 consensus_8975#5 TTTGCTGGTAACGAGCT-AGAAGATGGTCA--CGCACATTGTCTGATTACAATATTCAGA 125 consensus_8975#2 GCACTATGGACTGTTCGTAGCTTCCAACCAGGCTGGAGGAGTTTGATGAATCGATTTTGG 181 consensus_8975#4 TGGGCACTGTTTGGACTCTGAATCGAATTCCCGACGCCGCCATGGAGACTAAGGACTATA 161 consensus_8975#3 TGTTGAACGGAAGGCAGAAAAGCGTGGAAT-TTATTCTGAGTCTGATAAAACGGATGGTA 233 consensus_8975#0 TTAGTAAACATCCATCATTTAATATGAATGAAACCAATATAATACCAACCAATAATTTAC 476 consensus_8975#1 TTACTTCATATTCATTTTATAAAGTGGGTAAATC--------TTTTGATTTATAA--CAT 379 consensus_8975#6 AT-CCCAATAACTGTTGTTTCA-GTGGATATAATGAAGCGT------------------- 98 consensus_8975#5 AGAGTC--CACTCTTCACTTGGTGTTCGCTGTCGTGAGTACTTATTTGCTATTACTATAA 183 consensus_8975#2 AGGTCTGCAGCATGCTGTTGTGTAGTAGCAAGAGTTTTTACTTGATTACAGATAGTGCTG 241 consensus_8975#4 TTCTATGCCCCATATCGCCGTATGTAGGCGGTATTA--CATTTCAGAGGCGGCGTTTCAA 219 consensus_8975#3 CT-ATGGATGACTGGGACATAA-ATAAATTAGAAGAAGTGATTAGCAAAAAGCATGATGC 291 consensus_8975#0 CTATACAAGAACCAAATATAAAACAATCAGCAAAAAGAAAATTT-TGTTGTACATAGAAA 535 consensus_8975#1 CAAAATAACAAAGTATTATAGAA--ATGTGCAAAAAGAGAACTTATGAATTATTTATTAA 437 consensus_8975#6 ------------------------------------------------------------ consensus_8975#5 CGTTATTACTA------------------------------------------------- 194 consensus_8975#2 ATAAGTAGATTGGCAAGGACAAATTCTTTCAACCCATCTAAACCCAAAAGAATGAGAGGG 301 consensus_8975#4 CCAACTTTGGGATATACCTGGATGGTACTTGTCCATGTTGATCGATGATGATGTTCAGAC 279 consensus_8975#3 TGATAACAAAGGGTTACCACCCAGTACTATAGTATGTAAGTACTTCATTGAAGCAGTGGA 351 consensus_8975#0 GGAATGTAAAGTATACATATCTGAATTTCTTTGCTATTTTTTTTTCTTTTTTTTTATACC 595 consensus_8975#1 G--ATTTCGATTTTAATTGGCAAGATGTTTTTTCCTTCTGTAAAATAATAAAGAAAAAAA 495 consensus_8975#6 ------------------------------------------------------------ consensus_8975#5 ------------------------------------------------------------ consensus_8975#2 GATTTGGTGATGGTACACGTACCAATGGAGGGTGTACCTTTTGACCAAATACCACAAGTT 361 consensus_8975#4 TGCATTCCTCGCCTCCAGGAGTTGCGAGTTTCCTACTCGCCTGCCGGGCTTACGGCCACG 339 consensus_8975#3 ACATTTCAAGTATGGTTGGTTTAGGGAGTGTCCGAATGGAAAGACATGTCATTACAGACA 411 consensus_8975#0 C---CCCCCTTTGATCACTATAATTNTTTTCTTTTTTTTTCATGACCCCCTTTGATCAT- 651 consensus_8975#1 GAAATCCATTGTATTCAATAGACAGTTTTGTTCAGTCACTTAAAAACAATTATAGTAATA 555 consensus_8975#6 ------------------------------------------------------------ consensus_8975#5 ------------------------------------------------------------ consensus_8975#2 AAG-TCAACCATGGAGGCCGAGATTGACAACACATGCACTATACGGGTTTCTTGCAAAAA 420 consensus_8975#4 CACTCCTTGTCTTT---------------------------------------------- 353 consensus_8975#3 TT---------------------------------------------------------- 413 consensus_8975#0 TNTTTTTCTTTTTTTGGTTTTGTCTATTTACTTTCCTCGTAAAC-AATAATTATAAAAAT 710 consensus_8975#1 TATCCAATACTCAATAAATAACTTTGTATATAATCAT-GTATACGAATGATTTTACTATT 614 consensus_8975#6 ------------------------------------------------------------ consensus_8975#5 ------------------------------------------------------------ consensus_8975#2 TTGGTTGAATTGGAAGGTTAACCCANGGGTCGGCCAAGGTT------------------- 461 consensus_8975#4 ------------------------------------------------------------ consensus_8975#3 ------------------------------------------------------------ consensus_8975#0 GGAAATGTA-------- 719 consensus_8975#1 TTGAATAAACAAATTTT 631 consensus_8975#6 ----------------- consensus_8975#5 ----------------- consensus_8975#2 ----------------- consensus_8975#4 ----------------- consensus_8975#3 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||