cluster # 8979

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Schistosoma mansoni
cluster # 8979 cluster # 8979 Sequences # 8 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8979#0 length = 686 sequences # 1
consensus_8979#1 length = 499 sequences # 1

consensus_8979#2 length = 365 sequences # 1
consensus_8979#3 length = 300 sequences # 4
consensus_8979#4 length = 224 sequences # 1

consensusID : consensus_8979#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence

                              [GCGTATTACACTTTTCGATACTGTACTGAGACATCACATCTAATTAGAAAATAAAATAAAAATTGAATGAAAAAGCACTTCACTAATTTCATATTCAGTCAGATCAGAATCCATGTTGATCTGGAGGAAATAACTTGTAAGCGGAGATGTATGGTGACTTATGACCGAGAAATAGACTTCTCCACTGAATATCACTACATCCTGGGGTCGATATTCATTTCGAGACTCCGCTAGATACCATTCATCTCTGCTGAAAACACTTGTGACTCAGTGGCAATATCGAGGTAATCCGTACAGGTAACACAACTGACGAAATATACTGATCGATCGTAGTCTTTAACACCAGTGGGAAGATTGAATGATGAGTACACACAGGTGAATTAATTCCTTATTTGAATGCCACCAGGGAAACTCATAGAAAATTTAAGATGTCCTGCCAAACCTTCGACTATATATGTTGGCGTGGTGCACCTTTATTGCACAGAACCTACATACCATTCGGCAAACAATTAGGGAGGGATGAAAATGGTCAAGATTTTCTGATAAACTCTCGATGTTAATTAAACACTAGAATTTACATACTGGCATTAGCAACGACGACATGGAAAATAATTGTATACAGTCGAAGTTGGGGAAGACTATGGGTGAAATACAGTTTCTCTCATAATGATCACGTAAACGACGTT]

[+] EMBL CD114286             [GCGTATTACACTTTTCGATACTGTACTGAGACATCACATCTAATTAGAAAATAAAATAAAAATTGAATGAAAAAGCACTTCACTAATTTCATATTCAGTCAGATCAGAATCCATGTTGATCTGGAGGAAATAACTTGTAAGCGGAGATGTATGGTGACTTATGACCGAGAAATAGACTTCTCCACTGAATATCACTACATCCTGGGGTCGATATTCATTTCGAGACTCCGCTAGATACCATTCATCTCTGCTGAAAACACTTGTGACTCAGTGGCAATATCGAGGTAATCCGTACAGGTAACACAACTGACGAAATATACTGATCGATCGTAGTCTTTAACACCAGTGGGAAGATTGAATGATGAGTACACACAGGTGAATTAATTCCTTATTTGAATGCCACCAGGGAAACTCATAGAAAATTTAAGATGTCCTGCCAAACCTTCGACTATATATGTTGGCGTGGTGCACCTTTATTGCACAGAACCTACATACCATTCGGCAAACAATTAGGGAGGGATGAAAATGGTCAAGATTTTCTGATAAACTCTCGATGTTAATTAAACACTAGAATTTACATACTGGCATTAGCAACGACGACATGGAAAATAATTGTATACAGTCGAAGTTGGGGAAGACTATGGGTGAAATACAGTTTCTCTCATAATGATCACGTAAACGACGTT]




>consensus_8979#0
GCGTATTACACTTTTCGATACTGTACTGAGACATCACATCTAATTAGAAAATAAAATAAA
AATTGAATGAAAAAGCACTTCACTAATTTCATATTCAGTCAGATCAGAATCCATGTTGAT
CTGGAGGAAATAACTTGTAAGCGGAGATGTATGGTGACTTATGACCGAGAAATAGACTTC
TCCACTGAATATCACTACATCCTGGGGTCGATATTCATTTCGAGACTCCGCTAGATACCA
TTCATCTCTGCTGAAAACACTTGTGACTCAGTGGCAATATCGAGGTAATCCGTACAGGTA
ACACAACTGACGAAATATACTGATCGATCGTAGTCTTTAACACCAGTGGGAAGATTGAAT
GATGAGTACACACAGGTGAATTAATTCCTTATTTGAATGCCACCAGGGAAACTCATAGAA
AATTTAAGATGTCCTGCCAAACCTTCGACTATATATGTTGGCGTGGTGCACCTTTATTGC
ACAGAACCTACATACCATTCGGCAAACAATTAGGGAGGGATGAAAATGGTCAAGATTTTC
TGATAAACTCTCGATGTTAATTAAACACTAGAATTTACATACTGGCATTAGCAACGACGA
CATGGAAAATAATTGTATACAGTCGAAGTTGGGGAAGACTATGGGTGAAATACAGTTTCT
CTCATAATGATCACGTAAACGACGTT

consensusID : consensus_8979#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 499
fasta sequence

                              [AACTAACTAAGCCACCGTGACGTTGATTTTAGTCCTATCTTTGGTACTCAATGTTTCTAACCATTAGTTTCGAAAAGTCCTCCGTAAGGATCATAACAAGTATTTTCCGGAAAAATCTTTTATTTAATCGTTTTTGAATTATTAGTAAATAGTTGAATTCATGAGTCAATCGAAGCTAGACCACCATAGAAAACCTGGAAGCGCTGGACGGCCGTTTCGTATTAGTATTAGACTCCTCAGCAGTGCGCATCCACAATCCCGCCTCGCGAGATTCGAAACCAGGACCTATCGGTCTCGCGCGCGAACGCTAATTTCCCTCTACTTCACACGTTAACAAACCATCTCGTTATCCACCGTTTTGTCCTTCACTATTCTGCACTTTGGATGGTATCTTATGATTGAAATAATGAGTAGATTCAATAAAGTGTTCCTATCACTTAAACTTAGACCTTGTAAAAGTATGTGAATTCACTGGCTAAAAAGAACTAGCGGTCTCATA]

[+] EMBL CD127612             [AACTAACTAAGCCACCGTGACGTTGATTTTAGTCCTATCTTTGGTACTCAATGTTTCTAACCATTAGTTTCGAAAAGTCCTCCGTAAGGATCATAACAAGTATTTTCCGGAAAAATCTTTTATTTAATCGTTTTTGAATTATTAGTAAATAGTTGAATTCATGAGTCAATCGAAGCTAGACCACCATAGAAAACCTGGAAGCGCTGGACGGCCGTTTCGTATTAGTATTAGACTCCTCAGCAGTGCGCATCCACAATCCCGCCTCGCGAGATTCGAAACCAGGACCTATCGGTCTCGCGCGCGAACGCTAATTTCCCTCTACTTCACACGTTAACAAACCATCTCGTTATCCACCGTTTTGTCCTTCACTATTCTGCACTTTGGATGGTATCTTATGATTGAAATAATGAGTAGATTCAATAAAGTGTTCCTATCACTTAAACTTAGACCTTGTAAAAGTATGTGAATTCACTGGCTAAAAAGAACTAGCGGTCTCATA]




>consensus_8979#1
AACTAACTAAGCCACCGTGACGTTGATTTTAGTCCTATCTTTGGTACTCAATGTTTCTAA
CCATTAGTTTCGAAAAGTCCTCCGTAAGGATCATAACAAGTATTTTCCGGAAAAATCTTT
TATTTAATCGTTTTTGAATTATTAGTAAATAGTTGAATTCATGAGTCAATCGAAGCTAGA
CCACCATAGAAAACCTGGAAGCGCTGGACGGCCGTTTCGTATTAGTATTAGACTCCTCAG
CAGTGCGCATCCACAATCCCGCCTCGCGAGATTCGAAACCAGGACCTATCGGTCTCGCGC
GCGAACGCTAATTTCCCTCTACTTCACACGTTAACAAACCATCTCGTTATCCACCGTTTT
GTCCTTCACTATTCTGCACTTTGGATGGTATCTTATGATTGAAATAATGAGTAGATTCAA
TAAAGTGTTCCTATCACTTAAACTTAGACCTTGTAAAAGTATGTGAATTCACTGGCTAAA
AAGAACTAGCGGTCTCATA

consensusID : consensus_8979#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 365
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTCATTACAAATTTGTTAATGATAGCATAGAAGCAATGATAAAAACAGATCTATGATAAACAATGTAAATAAATACATTTCTTTTAGAATAAAAGATCATTTTGGTAAATTTTATGGATCAAAAATTGATCTGAAAAATAAAAAAGAAACCATAGTGAATGTTAAAGCAAAAAGCGATAAGAAAAAATTAGTGTTTGTCTCTTGATTATAACTCCGCCTGTAGCTCTTAGAGAGTTACTGCCGGTCCCAAGCCCGGCAGTAGCCCCCGGAGAAGCTACAGGCGGAAAGGATTGTTCAGGATAGAGTTGGATGGAGAATGCTGGTGGGCGGGGCTTATGCCCC]

[+] EMBL AI395084             [TTTTTTTTTTTTTTTTTTTTTTTTTCATTACAAATTTGTTAATGATAGCATAGAAGCAATGATAAAAACAGATCTATGATAAACAATGTAAATAAATACATTTCTTTTAGAATAAAAGATCATTTTGGTAAATTTTATGGATCAAAAATTGATCTGAAAAATAAAAAAGAAACCATAGTGAATGTTAAAGCAAAAAGCGATAAGAAAAAATTAGTGTTTGTCTCTTGATTATAACTCCGCCTGTAGCTCTTAGAGAGTTACTGCCGGTCCCAAGCCCGGCAGTAGCCCCCGGAGAAGCTACAGGCGGAAAGGATTGTTCAGGATAGAGTTGGATGGAGAATGCTGGTGGGCGGGGCTTATGCCCC]




>consensus_8979#2
TTTTTTTTTTTTTTTTTTTTTTTTTCATTACAAATTTGTTAATGATAGCATAGAAGCAAT
GATAAAAACAGATCTATGATAAACAATGTAAATAAATACATTTCTTTTAGAATAAAAGAT
CATTTTGGTAAATTTTATGGATCAAAAATTGATCTGAAAAATAAAAAAGAAACCATAGTG
AATGTTAAAGCAAAAAGCGATAAGAAAAAATTAGTGTTTGTCTCTTGATTATAACTCCGC
CTGTAGCTCTTAGAGAGTTACTGCCGGTCCCAAGCCCGGCAGTAGCCCCCGGAGAAGCTA
CAGGCGGAAAGGATTGTTCAGGATAGAGTTGGATGGAGAATGCTGGTGGGCGGGGCTTAT
GCCCC

consensusID : consensus_8979#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 300
fasta sequence

                              [CTAGATGGAATCTAGTGTAAATGCATAAAAACGAAACATACCTCAGGCTCGTTTTCCTTCTCCTCCACCTCGTAGACATCTTCGGAGACCTCTTGTA-TTTTTCTGTGAGCCACCATGTTTGCAAACACATCTTTGCCGTCATTAGCTTTGCGTAGTCCTTTGTTGTTTAATAAAACGGCTGGTTTGGAAGACTGACGCATAGCTTTGTATTCTTCTAGTGTGTAGCTTTTCGGTTCTTCCTCAACTGGGGTTTCTGTGCCGACAACCACACCCTCCTCATTCTC-AGCTGTGGCATGCTCT]

[+] EMBL CD158147             [CTAGATGGAATCTAGGGTAAATGCATAAAAACGAAACATACCTCAGGCTCGTTTTCCTTCTCCTCCACCTCGAAGACATCTTCGGAGACCTCTTGTA TTTTTCTGTGAGCCACCATGTTTGCAAACACATCTTTGCCGACATTAGCTTTGCGTAGTCCTTTGTTGTTTAATAAAACGGCTGGTTTGGAAGACTGACGCATAGCTTTGTATTCTTCTAGTGTGTAGCTTTTCGGTTCTTCCTCAACTGGGGTTTCTGTGCCGACAACCACACCCTCCTCATTCTC AGCTGTGGCATGCTC ]
[+] EMBL CD092323             [CTAGATGGAATCTAGTGTAAATGCATAAAAACGAAACATACCTCAGGCTCGTTTTCCTTCTCCTCCACCTCGTAGACATCTTCGGAGACCTCTTGTA TTTTTCTGTGAGCCACCATGTTTGCAAACACATCTTTGCCGTCATTAGCTTTGCGTAGTCCTTTGTTGTTTAATAAAACGGCTGGTTTGGAAGACTGACGCATAGCTTTGTATTCTTCTAGTGTGTAGCTTTTCGGTTCTTCCTCAACTGGGGTTTCTGTGCCGACAACCACACNCTCCTCATTCTCAAACTGT GCATGCTC ]
[+] EMBL CD157992             [CTAGATGGAATCTAGTGTAAATGCATAAAAACGAAACATACCTCAGGCTCGTTTTCCTTCTCCTCCACCTCGTAGACATCTTCGGAGACCTCTTGTA TTTTTCTGTGAGCCACCATGTTTGCAAACACATCTTTGCCGTCATTAGCTTTGCGTAGTCCTTTGTTGTTTAATAAAACGGCTGGTTTGGAAGACTGACGCATAGCTTTGTATTCTTCTAGTGTGTAGCTTTTCGGTTCTTGCTCAACTGGGGTTTCTGTGCCGAC ACCACACCCTCCTCATTCTC AGCTGTCGCATGCTC ]
[-] EMBL CD193487             [ TAGATGGAATCTAGTGTAAATGCATAAAAACGAAACATACCTCAGGCTCGTTTTCCTTCTCCTCCACCTCGTAGACATCTTCGGAGACCTCTTGTATTTTTTCTGTGAGCCACCATGTTTGCAAACACATCTTTGCCGTCATTAGCTTTGCGTAGTCCTTTGTTGTTTAATAAAACGGCTGGTTTGGAAGACTGACGCATAGCTTTGTATTCTTCTAGTGTGTAGCTTTTCGGTTCTTCCTCAACTGGGGTTTCCGTGCCGACAACCACACCCTCCTCATTCTC AGCTGTGGCATGCTCT]




>consensus_8979#3
CTAGATGGAATCTAGTGTAAATGCATAAAAACGAAACATACCTCAGGCTCGTTTTCCTTC
TCCTCCACCTCGTAGACATCTTCGGAGACCTCTTGTATTTTTCTGTGAGCCACCATGTTT
GCAAACACATCTTTGCCGTCATTAGCTTTGCGTAGTCCTTTGTTGTTTAATAAAACGGCT
GGTTTGGAAGACTGACGCATAGCTTTGTATTCTTCTAGTGTGTAGCTTTTCGGTTCTTCC
TCAACTGGGGTTTCTGTGCCGACAACCACACCCTCCTCATTCTCAGCTGTGGCATGCTCT

consensusID : consensus_8979#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [AATACGTGGAAGAGCTAGCAGTGACAGCGGAAGAAGCTGCAAGAGAAGGAAGTATGAAACAATTACATGACACGACGAAGAAACCAGCAGGGAGATATAGTAAACTAGAGAAACCAGTCAAGGACAAAGAAGGGAAGACAATCACGGAGATTCAAGAACAGAGGAACAGATAGGTAGAATACTTCGAGGAACTCTTGAATAGACCGGCTCCACTGAACCCACCG]

[+] EMBL CD194781             [AATACGTGGAAGAGCTAGCAGTGACAGCGGAAGAAGCTGCAAGAGAAGGAAGTATGAAACAATTACATGACACGACGAAGAAACCAGCAGGGAGATATAGTAAACTAGAGAAACCAGTCAAGGACAAAGAAGGGAAGACAATCACGGAGATTCAAGAACAGAGGAACAGATAGGTAGAATACTTCGAGGAACTCTTGAATAGACCGGCTCCACTGAACCCACCG]




>consensus_8979#4
AATACGTGGAAGAGCTAGCAGTGACAGCGGAAGAAGCTGCAAGAGAAGGAAGTATGAAAC
AATTACATGACACGACGAAGAAACCAGCAGGGAGATATAGTAAACTAGAGAAACCAGTCA
AGGACAAAGAAGGGAAGACAATCACGGAGATTCAAGAACAGAGGAACAGATAGGTAGAAT
ACTTCGAGGAACTCTTGAATAGACCGGCTCCACTGAACCCACCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8979#2      ------------------------------------------------------------
consensus_8979#4      ------------------------------------------------------------
consensus_8979#1      ------------------------------------------------------------
consensus_8979#3      ------------------------------------------------------------
consensus_8979#0      GCGTATTACACTTTTCGATACTGTACTGAGACATCACATCTAATTAGAAAATAAAATAAA 60
                                                                                  

consensus_8979#2      ------------------------------------------------------------
consensus_8979#4      ------------------------------------------------------------
consensus_8979#1      ------------------------------------------------------------
consensus_8979#3      ------------------------------------------------------------
consensus_8979#0      AATTGAATGAAAAAGCACTTCACTAATTTCATATTCAGTCAGATCAGAATCCATGTTGAT 120
                                                                                  

consensus_8979#2      ----------------------------------------TTTTTTTTTTTTTTTTTTTT 20
consensus_8979#4      ------------------------------------------------------------
consensus_8979#1      -------AACTAACTAAGCCACCGTGACGTTGATTTTAGTCCTATCTTTGGTACTCAATG 53
consensus_8979#3      -----------------------------------------------CTAGATGGAATCT 13
consensus_8979#0      CTGGAGGAAATAACTTGTAAGCGGAGATGTATGGTGACTTATGACCGAGAAATAGACTTC 180
                                                                                  

consensus_8979#2      TTT-TTCATTACAAATTTGTTAATGATAGCATAGAAGCAATGATAAAAACAGATCTATGA 79
consensus_8979#4      -------------AATACGTGGAAGAGCTAGCAGTGACAGCGGAAGAAGCTGCAAGAGAA 47
consensus_8979#1      TTT-CTAACCATTAGTTT-CGAAAAGTCCTCCGTAAGGATCATAACAAGTATTTTCCGGA 111
consensus_8979#3      AGT-GTAAATGCATAAAAACGAAACATACCTCAGGCTCGTTTTCCTTCTCCTCCACCTCG 72
consensus_8979#0      TCCACTGAATATCACTACATCCTGGGGTCGATATTCATTTCGAGACTCCGCTAGATACCA 240
                                                                                  

consensus_8979#2      TAAACAATGTAAATAAATACATTTCTTTTAGAATAAA---AGATCAT-TTTGGTAAATTT 135
consensus_8979#4      GGAAGTATG-AAACAATTACATGACACGACGAAGAAA---CCAGCA-----GGGAGATAT 98
consensus_8979#1      AAAATCTTTTATTTAATCGTTTTTGAATTATTAGTAA---ATAGTT-----GAATTCATG 163
consensus_8979#3      TAGACATCTTCGGAGACCTCTTGTATTTTTCTGTGAG---CCACCATGTTTGCAAACACA 129
consensus_8979#0      TTCATCTCTGCTGAAAACACTTGTGACTCAGTGGCAATATCGAGGTAATCCGTACAGGTA 300
                         *           *     *             *      *        *        

consensus_8979#2      TATGGATCAAAAATTGATCTGAAAAATAAAAAAGAAACCATAGTGAATGTTAAAGCAAAA 195
consensus_8979#4      AGTAAACTAGAGAAACCAGTCAAGGACAAAGAAGGGAAGACAATCACGG--AGATTCAAG 156
consensus_8979#1      AGTCAATCGAAGCTAGACCACCATAGAAAACCTGGAAGCGCTG-GACGGCCGTTTCGTAT 222
consensus_8979#3      TCTTTGCCGTCATTAGCTTTGCGTAGTCCTTTGTTGTTTAATAAAACGGCTGGTTTGGAA 189
consensus_8979#0      ACACAACTGACGAAATATACTGATCGATCGTAGTCTTTAACACCAGTGGGAAGATTGAAT 360
                                                                      *         * 

consensus_8979#2      AGCGATAAGAAAAAATTAGTGTTTGTCTCTTGATTATAACTCCGCCTGTAGCTCTTAGAG 255
consensus_8979#4      AAC-AGAGGAACAGATAGGT---------------AGAATACTTCGAGGAACTCTTGAAT 200
consensus_8979#1      TAGTATTAGACTCCTCAGCAGTGCGCATCC--ACAATCCCGCCTCGCGAGATTCGAAACC 280
consensus_8979#3      GACTGACGCATAGCTTTGTATT---CTTCTAGTGTGTAGCTTTTCGGTTCTTCCTCAACT 246
consensus_8979#0      GATGAGTACACACAGGTGAATTAATTCCTTATTTGAATGCCACCAGGGAAACTCATAGAA 420
                               *                                           *      

consensus_8979#2      AGTTACTGCCGGTCCCAAGCCC-GGCAGTAGCCCCCGGAGAAGCTACAGGCGGAAAGGAT 314
consensus_8979#4      AG--ACCGGCTCCACTGAACCC-ACCG--------------------------------- 224
consensus_8979#1      AGGACCTATCGGTCTCGCGCGCGAACGCTAATTTCCCTCTACTTCACACGTTAACAAACC 340
consensus_8979#3      GGGGTTTCTGTGCCGACAACCACACCCTCCTCATTCTCAGCTGTGGCATGCTCT------ 300
consensus_8979#0      AATTTAAGATGTCCTGCCAAACCTTCGACTATATATGTTGGCGTGGTGCACCTTTATTGC 480
                                               *                                  

consensus_8979#2      TGTTCAG-GATAGAGTTGGATGGAGAATGCTGGTGGGCGGGGCTTATGCCCC-------- 365
consensus_8979#4      ------------------------------------------------------------
consensus_8979#1      ATCTCGT-TATCCACCGTTTTGTCCTTCACTATTCTGCACTTTGGATGGTATCTTATGAT 399
consensus_8979#3      ------------------------------------------------------------
consensus_8979#0      ACAGAACCTACATACCATTCGGCAAACAATTAGGGAGGGATGAAAATGGTCAAGATTTTC 540
                                                                                  

consensus_8979#2      ------------------------------------------------------------
consensus_8979#4      ------------------------------------------------------------
consensus_8979#1      TGAAATAATGAGTAGATTCAATAAAGTGTTCCTATCACTTAAACTTAGACCTTGTAAAAG 459
consensus_8979#3      ------------------------------------------------------------
consensus_8979#0      TGATAAACTCTCGATGTTAATTAAACACTAGAATTTACATACTGGCATTAGCAACGACGA 600
                                                                                  

consensus_8979#2      ------------------------------------------------------------
consensus_8979#4      ------------------------------------------------------------
consensus_8979#1      TATGTGAATTCACTGGCTAAAAAGAACTAGCGGTCTCATA-------------------- 499
consensus_8979#3      ------------------------------------------------------------
consensus_8979#0      CATGGAAAATAATTGTATACAGTCGAAGTTGGGGAAGACTATGGGTGAAATACAGTTTCT 660
                                                                                  

consensus_8979#2      --------------------------
consensus_8979#4      --------------------------
consensus_8979#1      --------------------------
consensus_8979#3      --------------------------
consensus_8979#0      CTCATAATGATCACGTAAACGACGTT 686