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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8986#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 902 fasta sequence
[TCAAATATGGTGCTCTGTCGGCAGGGAAATATAAAAGTCATATTTTTAAGGTCGTATTTAGGGTCACACTTTTAAGTGCATCCATACTGCGTACACTGTTTTTTTTTACAATAAAGGTCCTATCTGTGTATGGTCGTCCGACTATAGGCCGCAATTATGGGCTTGATTTCTTCTCGGAGTCAGCAAGTGGTTCAAG-AAAAGGAGATTCTAAGAGAATGTCCAATTCAGAAAGGTGGTGGATGCCCAGTGGATCATGGGTACAAAGACCTCAGTCCAGAAAATCTTATGCCACCCCCTAACCAACTCCCAAGTCCTGGACAACCTTTCCCACTGTCTACTGAACGCGAATTGTCTTCTATTCCAAAAGCAGATAGTTCTAATGGTGAAAAATGGATATATCCTTCACCTCAAATGTTTTGGAACGCTATGCTTCGTAAAGGTTGGCGTTGGCGAGATGATGATATCAAGCCTGAAGATATGAACAACATCATACACATACATAATGTCAATAATGAATTAGCTTGGCGTGAGGTTTTAAAATGGGAAGCTCTACATGCTAATGAATGTATGACACCGAAATTGCGTCGTTTTGCTGGGGATGCAAAAAACTATTCTCCAAGAGCACGTATCCGTCGGGCCATGGGTTATGAGTTGGCCTTTCGATCGTCATGACTGGGTGATCGATTCTGACAGTCAGTGTCTCTACACCTAGTATTCAGGCAACATTTCGTTATTGTCACTTTGTCACGATACAATATGAACGGTATGTCAGCTCTCGTAAATTAATCGGGTCAGTGGCTCANAACACCGTTATGGCAGCAACATTACCATAGTCCTGTCTTTTACATCTATGGTATGACGTGGTTGGAAGATGAGAACGTTTCCTACCTGCATCTTTACTT]
[+] EMBL CD166832 [TCAAATATGGTGCTCTGTCGGCAGGGAAATATAAAAGTCATATTTTTAAGGTCGTATTTAGGGTCACACTTTTAAGTGCATCCATACTGCGTACACTGTTTTTTTTTACAATAAAGGTCCTATCTGTGTATGGTCGTCCGACTATAGGCCGCAATTATGGGCTTGATTTCTTCTCGGAGTCAGCAAGTGGTTCAAG AAAAGGAGATTCTAAGAGAATGTCCAATTCAGAAAGGTGGTGGATGCCCAGTGGATCATGGGTACAAAGACCTCAGTCCAGAAAATCTTATGCCACCCCCTAACCAACTCCCAAGTCCTGGACAACCTTTCC ]
[+] EMBL CD135186 [ CCGACTATAGGCCGCAATTATGGGCTTGATTTCTTCTCGGAGTCAGCAAGTGGTTCAAG AAAAGGAGATTCTAAGAGAATGTCCAATTCAGAAAGGTGGTGGATGCCCAGTGGATCATGGGTACAAAGACCTCAGTCCAGAAAATCTTATGCCACCCCCTAACCAACTCCCAAGTCCTGGACAACCTTTCCCACTGTCTACTGAACGCGAATTGTCTTCTATTCCAAAAGCAGATAGTTCTAATGGTGAAAAATGGATATATCCTTCACCTCAAATGTCTTGGAAC ]
[+] EMBL CD190566 [ ggcttcttGTCAGCAAGTGGTTCAAGTAAAAGGAGATTCTAAGAGAATGTCCAATTCAGAAAGGTGGTGGATGCCCAGTGGATCATGGGTACAAAGACCTCAGTCCAGAAAATCTTATGCCACCCCCTAACCAACTCCCAAGTCCTGGACAACCTTTCCCACTGTCTACTGAACGCGAATTGTCTTCTATTCCAAAAGCAGATAGTTCTAATGGTGAAAAATGGATATATCCTTCACCTCAAATGTTTTGGAACGCTATGCTTCGTAAAGGTTGGCGTTGGCGAGATGATGATATCAAGCCTGAAGATATGAACAACATCATACACATACATAATGTCAATAATGAATTAGCTTGGCGTGAGGTTTTAAAATGGGAAGCTCTACATGCTAATGAATGTATGACACCGAAATTGCGTCGTTTTGCTGGGGATGCAAAAAACTATTCTCCAAGAGCACGTATCCGTCGGGCCATGGGTTATGAGTT GCCTTTCGATCGTCATGACTGGGTGATCGAT ]
[+] EMBL CD083491 [ GTGGTTCAAG AAAAGGAGATTCTAAGAGAATGTCCAATTCAGAAAGGTGGTGGATGCCCAGTGGATCATGGGTACAAAGACCTCAGTCCAGAAAATCTTATGCCACCCCCTAACCAACTCCCAAGTCCTGGACAACCTTTCCCACTGTCTACTGAACGCGAATTGTCTTCTATTCCAAAAGCAGATAGTTCTAATGGTGAAAAATGGATATATCCTTCACCTCAAATGTTTTGGAACGCTATGCTTCGTAAAGGTTGGCGTTGGCGAGATGATGATATCAAGCCTGAAGATATGAACAACATCATACACATACATAATGTCAATAATGAATTAGCTTGGCGTGAGGTTTTAAAATGGGAAGCTCTACATGCTAATGAATGTATGACACCGAAATTGCGTCGTTTTGCTGGGGATGCAAAAAACTATTCTCCAAGAGCACGTATCCGTCGGGCCATGGGTTATGAGTTG ]
[+] EMBL CD133302 [ CCCACTGTCTACTGAACGCGAATTGTCTTCTATTCCAAAAGCAGATAGTTCTAATGGTGAAAAATGGATATATCCTTCACCTCAAATGTTTTGGAACGCTATGCTTCGTAAAGGTTGGCGTTGGCGAGATGATGATATCAAGCCTGAAGATATGAACAACATCATACACATACATAATGTCAATAATGAATTAGCTTGGCGTGAGGTTTTAAAATGGGAAGCTCTACATGCTAATGAATGTATGACACCGAAATTGCGTCGTTTTGCTGGGGATGCAAAAAACTATTCTCCAAGAGCACGTATCCGTCGGGCCATGGGGACTCAGTTCGCATAT ATTCTCAGGAAT GGTTATCTTGTCTGACAGTCAGTGTCTCTACACCTAGTATTCAGGCAACATTTCGTTATTGTCACTTTGTCACGATACAATATGAACGGTATGTCAGCTCTCGTAAATTAATCGGGTCAGTGGCTCANAACACCGTTATGGCAGCAACATTACCATAGTCCTGTCTTTTACATCTATGGTATGACGTGGTTGGAAGATGAGAACGTTTCCTACCTGCATCTTTACTT]
consensusID : consensus_8986#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence
[ATCCGTTGTCGTTTAACGTCAATGCTATTACACTCAAATCATGTATCACTGTTTTTAACCTGTCGAGTTGGCTTAGTGGTTAGTACCTCCGACTCTGTACCATGTCCGAACCCTACTCCACGTACTCCGGTTGAGTAAACTGGTTATCAGTTGCCTTTCGATCGTCGTGACTGGGTGATCGATCGATGTGGTAGAGAAGTACGTTATGTAATTGATTATTATGATGGAGGTTCTGTGAATGAAGCATATCAGTTCGCTATTCTGGATGTACGGCCTGCATTAGATTCGTTCGGTGCATTTTGGGATCGTGTTCTAGTTGCGTGGATGCGTTTCAGGATTCCTGATCCGCCAAAGAAACTCCATTCAAATGATCCAACATTTCCGAAAAAGAATGAAGTGCCTTGAGTGTTACACTCTTATTCAACCCACTTAGCTCGATACTATGTATATGTAT]
[+] EMBL CD135614 [ATCCGTTGTCGTTTAACGTCAATGCTATTACACTCAAATCATGTATCACTGTTTTTAACCTGTCGAGTTGGCTTAGTGGTTAGTACCTCCGACTCTGTACCATGTCCGAACCCTACTCCACGTACTCCGGTTGAGTAAACTGGTTATCAGTTGCCTTTCGATCGTCGTGACTGGGTGATCGATCGATGTGGTAGAGAAGTACGTTATGTAATTGATTATTATGATGGAGGTTCTGTGAATGAAGCATATCAGTTCGCTATTCTGGATGTACGGCCTGCATTAGATTCGTTCGGTGCATTTTGGGATCGTGTTCTAGTTGCGTGGATGCGTTTCAGGATTCCTGATCCGCCAAAGAAACTCCATTCAAATGATCCAACATTTCCGAAAAAGAATGAAGTGCCTTGAGTGTTACACTCTTATTCAACCCACTTAGCTCGATACTATGTATATGTAT]
consensusID : consensus_8986#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 359 fasta sequence
[GAAGATATGAACAACATCATACACATACATAATGTCAATAATGAATTAGCTTGGCGTGAGGTTTTAAAATGGGAAGCTCTACATGCTAATGAATGTATGACACCGAAATTGCGTCGTTTTGCTGGGGATGCAAAAAACTATTCTCCAAGAGCA-CGTATCCGTCGGGCCATGGGTTATGAGTTGCCTTTCGATCGTCATGACTGGGTGATCGATCGATGTGGTAAAGAAGTACGTTATGTAATTGATTATTATGATGGAGGTTCTGTGAATGAAGCATATCAGTTCGCTATTCTGGATGTACGGCCTGCATTAGATTCGTTCGGTGCATTTTGGGATCGTGTTCTAGTTGCGTGGATGCG]
[-] EMBL CD066609 [GAAGATATGAACAACATCATACACATACATAATGTCAATAATGAATTAGCTTGGCGTGAGGTTTTAAAATGGGAAGCTCTACATGCTAATGAATGTATGACACCGAAATTGCGTCGTTTTGCTGGGGATGCAAAAAACTATTCTCCAAGAGCA CGTATCCGTCGGGCCATGGGTTATGAGTTGCCTTTCGATCGTCATGACTGGGTGATCGATCGATGTGGTAAAGAAGTACGTTATGTAATTGATTATTATGATGGAGGTTCTGTGAATGAAGCATATCAGTTCGCTATTCTGGATGTACGGCCTGCATTAGATTCGTTCGGTGCATTTTGGGATCGTGTTCTAGTTGCGTGGATGCG]
[-] EMBL CD168139 [ GAGGTTTTAAAATGGGAAGCTCTACATGCTAATGAATGTATGACACCGAAATTGCGTCGTTTTGCTGGGGATGCAAAAAACTATTCTCCAAGAGCAGGGTA CCG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8986#0 TCAAATATGGTGCTCTGTCGGCAGGGAAATATAAAAGTCATATTTTTAAGGTCGTATTTA 60
consensus_8986#2 ------------------------------------------------------------
consensus_8986#1 ------------------------------------------------------------
consensus_8986#0 GGGTCACACTTTTAAGTGCATCCATACTGCGTACACTGTTTTTTTTTACAATAAAGGTCC 120
consensus_8986#2 ------------------------------------------------------------
consensus_8986#1 ------------------------------------------------------------
consensus_8986#0 TATCTGTGTATGGTCGTCCGACTATAGGCCGCAATTATGGGCTTGATTTCTTCTCGGAGT 180
consensus_8986#2 ------------------------------------------------------------
consensus_8986#1 ------------------------------------------------------------
consensus_8986#0 CAGCAAGTGGTTCAAGAAAAGGAGATTCTAAGAGAATGTCCAATTCAGAAAGGTGGTGGA 240
consensus_8986#2 ------------------------------------------------------------
consensus_8986#1 ------------------------------------------------------------
consensus_8986#0 TGCCCAGTGGATCATGGGTACAAAGACCTCAGTCCAGAAAATCTTATGCCACCCCCTAAC 300
consensus_8986#2 ------------------------------------------------------------
consensus_8986#1 ------------------------------------------------------------
consensus_8986#0 CAACTCCCAAGTCCTGGACAACCTTTCCCACTGTCTACTGAACGCGAATTGTCTTCTATT 360
consensus_8986#2 ------------------------------------------------------------
consensus_8986#1 ------------------------------------------------------------
consensus_8986#0 CCAAAAGCAGATAGTTCTAATGGTGAAAAATGGATATATCCTTCACCTCAAATGTTTTGG 420
consensus_8986#2 ------------------------------------------------------------
consensus_8986#1 --------------ATCCGTTGTCGTTTAACGTCAATGCTATTACACTCAAAT--CATGT 44
consensus_8986#0 AACGCTATGCTTCGTAAAGGTTGGCGTTGGCGAGATGATGATATCAAGCCTGAAGATATG 480
consensus_8986#2 ---------------------------------------------------GAAGATATG 9
consensus_8986#1 ATCACTGTTTT---TAACCTGTCGAGTTGGCTTAGTGGTTA----GTACCTCCGACTCTG 97
* **
consensus_8986#0 AACAACATCATACACATACATAATGT-CAATAATGAATTAGCTTGGCGTGAGGTTTTAAA 539
consensus_8986#2 AACAACATCATACACATACATAATGT-CAATAATGAATTAGCTTGGCGTGAGGTTTTAAA 68
consensus_8986#1 TACCATGTCCGAACCCTACTCCACGTACTCCGGTTGAGTAAACTGGTTATCAGTTGCCTT 157
** * ** * * *** * ** * * * ** *** ***
consensus_8986#0 ATGGGAAGCTCTACATGCTAATGAATGTATGACACCGA-AATTGCGTCGTTTTGCTGGGG 598
consensus_8986#2 ATGGGAAGCTCTACATGCTAATGAATGTATGACACCGA-AATTGCGTCGTTTTGCTGGGG 127
consensus_8986#1 TCGATCGTCGTGACTGGGTGATCGATCGATGTGGTAGAGAAGTACGTTATGTAATTGATT 217
* * ** * * ** ** *** ** ** * *** * * **
consensus_8986#0 ATGCAAAAAACTATTCTCCAAGAGCA-CGTATCCGTCGGGCCATGGGTTATGAGTTGGCC 657
consensus_8986#2 ATGCAAAAAACTATTCTCCAAGAGCA-CGTATCCGTCGGGCCATGGGTTATGAGTTG-CC 185
consensus_8986#1 ATTATGATGGAGGTTCTGTGAATGAAGCATATCAGTTCGCT-----ATTCTGGATG---- 268
** * **** * * * * **** ** * ** ** *
consensus_8986#0 TTTCGATCGTCATGACTGGGTGATCGATTCTGACAGTCAGTGTCTCTAC-ACCTAGTATT 716
consensus_8986#2 TTTCGATCGTCATGACTGGGTGATCGATCGATGTGGTAAAGAAGTACGTTATGTAATTGA 245
consensus_8986#1 -TACGGCCTGCAT---TAGAT--TCGTTCGGTGCATTTTGGGATCGTGT--TCTAGTTGC 320
* ** * *** * * * *** * * ** *
consensus_8986#0 CAGGCAACATTTCGTTATTGTCACTTTGTCA---CGATACAATATGAACGGTATGTCAGC 773
consensus_8986#2 TTATTATGATGGAGGTTCTGTGAATGAAGCATATCAGTTCGCTATTCTGGATGTACGGCC 305
consensus_8986#1 GTGGATGCGTTTCAGGATTCCTGATCCGCCAAAGAAACTCCATTCAAATGATCCAACA-T 379
* * * ** * * * *
consensus_8986#0 TCTCGTAAATTAATCGGGTCAGTGGCTCANAACACCGTTATGGCAGCAACATTACCATAG 833
consensus_8986#2 TGCATTAGATTCGTTCGGT--GCATTTTGGGATCGTGTTCTAGTTGCGTGGATGCG---- 359
consensus_8986#1 TTCCGAAAAAGAATGAAGTGCCTTGAGTGTTACACTCTTATTCAACCCAC-TTAGCTCGA 438
* * * * ** * ** * * *
consensus_8986#0 TCCTGTCTTTTACATCTATGGTATGACGTGGTTGGAAGATGAGAACGTTTCCTACCTGCA 893
consensus_8986#2 ------------------------------------------------------------
consensus_8986#1 TACTATGT---ATATGTAT----------------------------------------- 454
consensus_8986#0 TCTTTACTT 902
consensus_8986#2 ---------
consensus_8986#1 ---------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||